Experiment set18IT017 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_22450 -4.0 -2.2 ATP-dependent DNA helicase RuvA compare
PS417_18310 -3.6 -1.8 hypothetical protein compare
PS417_19755 -3.0 -2.5 flagellar motor switch protein FliM compare
PS417_01915 -3.0 -0.9 ATP-dependent protease ATP-binding subunit HslU compare
PS417_24745 -3.0 -3.0 gamma-glutamyl phosphate reductase compare
PS417_14065 -2.9 -13.4 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_06375 -2.8 -1.2 deoxycytidine triphosphate deaminase compare
PS417_19790 -2.8 -3.4 ATP synthase compare
PS417_19665 -2.8 -4.0 flagellar motor protein MotD compare
PS417_26985 -2.7 -4.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_03260 -2.7 -1.6 5S ribosomal RNA compare
PS417_27870 -2.6 -5.3 ATP-dependent DNA helicase RecG compare
PS417_23545 -2.6 -3.1 gamma-glutamyl kinase compare
PS417_20785 -2.6 -3.5 transcriptional regulator compare
PS417_27040 -2.6 -4.4 3-phosphoglycerate dehydrogenase compare
PS417_06680 -2.6 -7.7 nuclease PIN compare
PS417_23380 -2.6 -3.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_27195 -2.5 -1.9 N-acetylglutamate synthase compare
PS417_16510 -2.5 -5.9 Clp protease ClpX compare
PS417_19800 -2.5 -2.8 flagellar motor switch protein FliG compare
PS417_08155 -2.5 -1.7 integration host factor subunit beta compare
PS417_22565 -2.4 -1.1 formyltetrahydrofolate deformylase compare
PS417_27865 -2.4 -2.5 LysR family transcriptional regulator compare
PS417_23950 -2.4 -2.6 polynucleotide phosphorylase/polyadenylase compare
PS417_21595 -2.3 -5.9 flagellar biosynthesis protein FlgN compare
PS417_02415 -2.3 -4.3 phosphoserine phosphatase compare
PS417_06200 -2.3 -7.1 protein-PII uridylyltransferase compare
PS417_19675 -2.3 -7.8 chemotaxis protein CheY compare
PS417_12855 -2.3 -4.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26530 -2.2 -1.8 hypothetical protein compare
PS417_21630 -2.2 -2.5 magnesium transporter compare
PS417_00045 -2.2 -2.1 glycerol acyltransferase compare
PS417_19835 -2.1 -2.0 flagellar biosynthesis protein FliS compare
PS417_19860 -2.1 -13.6 flagellar hook protein FlgL compare
PS417_21655 -2.1 -1.2 aspartate kinase compare
PS417_12805 -2.1 -10.5 glycogen branching protein compare
PS417_02560 -2.1 -2.8 23S rRNA methyltransferase compare
PS417_13510 -2.1 -1.5 polyketide cyclase compare
PS417_19745 -2.0 -7.6 flagellar assembly protein FliO compare
PS417_19850 -2.0 -8.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19880 -2.0 -8.6 flagellar basal body L-ring protein compare
PS417_08135 -2.0 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02975 -2.0 -4.2 3-dehydroquinate dehydratase compare
PS417_19885 -2.0 -3.2 flagellar basal body rod protein FlgG compare
PS417_21570 -1.9 -5.3 flagellar basal body rod protein FlgB compare
PS417_19840 -1.9 -8.1 flagellar cap protein FliD compare
PS417_21585 -1.9 -8.7 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19955 -1.9 -1.8 hypothetical protein compare
PS417_06145 -1.9 -1.3 hypothetical protein compare
PS417_19795 -1.9 -10.3 flagellar assembly protein FliH compare
PS417_19695 -1.9 -8.9 flagellar biosynthesis sigma factor compare
PS417_27595 -1.9 -3.4 recombinase XerC compare
PS417_19765 -1.9 -7.5 flagellar hook-length control protein compare
PS417_19650 -1.8 -5.0 chemotaxis protein CheW compare
PS417_01850 -1.8 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_21555 -1.8 -9.3 flagellar hook protein FlgE compare
PS417_17215 -1.8 -2.9 peptidylprolyl isomerase compare
PS417_19725 -1.8 -5.0 flagellar biosynthesis protein FlhB compare
PS417_21575 -1.8 -7.6 chemotaxis protein compare
PS417_01565 -1.8 -3.9 imidazole glycerol phosphate synthase compare
PS417_16490 -1.8 -1.5 cell division protein FtsK compare
PS417_21565 -1.8 -5.1 flagellar basal body rod protein FlgC compare
PS417_02485 -1.7 -3.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23810 -1.7 -10.2 acetolactate synthase 3 catalytic subunit compare
PS417_22445 -1.7 -4.5 ATP-dependent DNA helicase RuvB compare
PS417_19785 -1.7 -3.3 flagellar biogenesis protein compare
PS417_08540 -1.7 -2.6 RNA helicase compare
PS417_01855 -1.7 -3.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_01575 -1.7 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19825 -1.7 -11.3 ATPase AAA compare
PS417_19710 -1.7 -9.3 flagellar biosynthesis protein FlhA compare
PS417_23025 -1.6 -5.4 murein transglycosylase compare
PS417_27800 -1.6 -1.9 exodeoxyribonuclease III compare
PS417_19730 -1.6 -3.0 flagellar biosynthesis protein FliR compare
PS417_06540 -1.6 -1.8 membrane protein compare
PS417_06205 -1.6 -6.8 methionine aminopeptidase compare
PS417_19735 -1.6 -4.4 flagellar biosynthesis protein FliQ compare
PS417_26175 -1.6 -1.4 sarcosine oxidase subunit gamma compare
PS417_19655 -1.6 -4.8 chemotaxis protein CheW compare
PS417_07170 -1.6 -5.1 hypothetical protein compare
PS417_19865 -1.6 -7.5 flagellar hook protein FlgK compare
PS417_21000 -1.6 -2.1 CrfX protein compare
PS417_24615 -1.5 -1.4 hypothetical protein compare
PS417_23805 -1.5 -4.1 acetolactate synthase 3 regulatory subunit compare
PS417_01580 -1.5 -1.8 imidazole glycerol phosphate synthase compare
PS417_02555 -1.5 -8.9 exoribonuclease R compare
PS417_19870 -1.5 -2.3 flagellar rod assembly protein FlgJ compare
PS417_19350 -1.5 -3.9 GTP cyclohydrolase compare
PS417_23375 -1.5 -1.9 cytochrome C oxidase compare
PS417_09915 -1.5 -1.2 hypothetical protein compare
PS417_23370 -1.5 -4.9 protoheme IX farnesyltransferase compare
PS417_19740 -1.5 -4.8 flagellar biosynthesis protein flip compare
PS417_09470 -1.4 -1.3 hypothetical protein compare
PS417_26730 -1.4 -0.6 pyrroline-5-carboxylate reductase compare
PS417_23385 -1.4 -8.8 cytochrome o ubiquinol oxidase subunit I compare
PS417_27795 -1.4 -0.7 orotate phosphoribosyltransferase compare
PS417_20985 -1.4 -1.3 porin compare
PS417_27835 -1.4 -6.8 endoribonuclease compare
PS417_24500 -1.4 -2.6 DEAD/DEAH box helicase compare
PS417_27245 -1.4 -4.4 aminotransferase DegT compare
PS417_04365 -1.4 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23390 -1.4 -4.7 ubiquinol oxidase subunit II compare
PS417_05695 -1.4 -3.4 transcriptional regulator compare
PS417_00180 -1.4 -2.7 tryptophan synthase subunit alpha compare
PS417_21480 -1.3 -1.0 23S rRNA pseudouridylate synthase compare
PS417_19805 -1.3 -3.2 flagellar M-ring protein FliF compare
PS417_23770 -1.3 -0.8 exodeoxyribonuclease V subunit alpha compare
PS417_05100 -1.3 -1.7 RNA polymerase sigma factor compare
PS417_28450 -1.3 -2.2 XRE family transcriptional regulator compare
PS417_19660 -1.3 -4.4 cobalamin biosynthesis protein CobQ compare
PS417_27075 -1.3 -2.0 thiol-disulfide isomerase compare
PS417_05635 -1.3 -5.0 membrane protein compare
PS417_07560 -1.3 -1.3 universal stress protein UspA compare
PS417_00975 -1.3 -1.4 hypothetical protein compare
PS417_17070 -1.3 -2.0 RNA polymerase subunit sigma-24 compare
PS417_27940 -1.2 -1.3 type VI secretion protein compare
PS417_08245 -1.2 -1.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27515 -1.2 -3.9 heme biosynthesis protein HemY compare
PS417_04220 -1.2 -1.4 4-carboxymuconolactone decarboxylase compare
PS417_19690 -1.2 -5.8 histidine kinase compare
PS417_20700 -1.2 -5.2 cbb3-type cytochrome c oxidase subunit I compare
PS417_16005 -1.2 -1.7 ATPase compare
PS417_17125 -1.2 -2.8 transcriptional regulator compare
PS417_15495 -1.2 -1.5 FAD-dependent oxidoreductase compare
PS417_16370 -1.2 -4.6 chemotaxis protein CheY compare
PS417_15465 -1.2 -2.9 carboxynorspermidine decarboxylase compare
PS417_11825 -1.2 -1.9 transcriptional regulator compare
PS417_27425 -1.2 -6.2 exopolyphosphatase compare
PS417_04380 -1.2 -0.8 ABC transporter permease compare
PS417_05785 -1.2 -3.0 tail protein compare
PS417_25315 -1.1 -3.2 membrane protein compare
PS417_26370 -1.1 -3.6 RNA helicase compare
PS417_02005 -1.1 -6.1 glutamate synthase compare
PS417_07165 -1.1 -4.0 dihydrodipicolinate synthase compare
PS417_00185 -1.1 -2.3 tryptophan synthase subunit beta compare
PS417_04080 -1.1 -3.1 peptide ABC transporter substrate-binding protein compare
PS417_10720 -1.1 -3.8 chemotaxis protein CheY compare
PS417_18715 -1.1 -5.0 peptidase M4 compare
PS417_05165 -1.1 -1.7 cytosol aminopeptidase compare
PS417_21430 -1.1 -1.4 3-oxoacyl-ACP synthase compare
PS417_07615 -1.1 -4.2 TetR family transcriptional regulator compare
PS417_04420 -1.1 -5.8 histidinol dehydrogenase compare
PS417_28220 -1.1 -1.9 LysR family transcriptional regulator compare
PS417_23915 -1.1 -3.5 pantoate--beta-alanine ligase compare
PS417_28070 -1.1 -5.9 phosphate ABC transporter ATP-binding protein compare
PS417_24710 -1.1 -3.6 lipoprotein compare
PS417_22520 -1.1 -1.2 histidine kinase compare
PS417_03455 -1.1 -1.3 type III secretion protein compare
PS417_05815 -1.1 -3.4 recombinase RecA compare
PS417_04385 -1.1 -2.7 organic solvent ABC transporter substrate-binding protein compare
PS417_07140 -1.1 -2.2 peptidase M48 compare
PS417_21125 -1.1 -4.9 phosphoadenosine phosphosulfate reductase compare
PS417_24585 -1.0 -6.2 AMP nucleosidase compare
PS417_04435 -1.0 -5.3 uracil phosphoribosyltransferase compare
PS417_27585 -1.0 -1.6 diaminopimelate epimerase compare
PS417_20775 -1.0 -3.8 coproporphyrinogen III oxidase compare
PS417_10305 -1.0 -2.0 hypothetical protein compare
PS417_19830 -1.0 -4.4 flagellar assembly protein FliT compare
PS417_04305 -1.0 -1.2 aspartate ammonia-lyase compare
PS417_04390 -1.0 -3.1 toluene tolerance protein compare
PS417_20160 -1.0 -2.4 cysteine synthase compare
PS417_10220 -1.0 -2.8 hypothetical protein compare
PS417_04595 -1.0 -1.7 cell division protein MraZ compare
PS417_25645 -1.0 -3.0 peptidase M23 compare
PS417_24800 -1.0 -4.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_18600 -1.0 -2.2 isopropylmalate isomerase compare
PS417_05790 -1.0 -2.4 hypothetical protein compare
PS417_02510 -1.0 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27520 -0.9 -2.8 uroporphyrin-III methyltransferase compare
PS417_02000 -0.9 -5.4 glutamate synthase compare
PS417_12695 -0.9 -3.6 mannitol dehydrogenase compare
PS417_00220 -0.9 -1.1 hypothetical protein compare
PS417_01920 -0.9 -0.7 ATP-dependent protease subunit HslV compare
PS417_22840 -0.9 -1.6 tRNA-Met compare
PS417_28080 -0.9 -6.4 phosphate ABC transporter permease compare
PS417_19720 -0.9 -1.4 DNA-binding protein compare
PS417_08420 -0.9 -3.4 lipoprotein compare
PS417_01635 -0.9 -4.4 nitrogen regulation protein NR(I) compare
PS417_13140 -0.9 -1.2 oxidoreductase compare
PS417_14160 -0.9 -3.9 hypothetical protein compare
PS417_01965 -0.9 -1.1 fimbriae biosynthesis protein compare
PS417_01795 -0.9 -6.7 glucosyltransferase MdoH compare
PS417_17240 -0.9 -2.7 trigger factor compare
PS417_25320 -0.9 -5.4 dTDP-4-dehydrorhamnose reductase compare
PS417_07000 -0.9 -1.4 hypothetical protein compare
PS417_07870 -0.9 -1.3 hypothetical protein compare
PS417_18040 -0.9 -1.2 general secretion pathway protein GspN compare
PS417_09085 -0.9 -1.1 hypothetical protein compare
PS417_18560 -0.9 -5.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25720 -0.9 -4.6 anthranilate synthase component II compare
PS417_05975 -0.9 -0.6 chemotaxis protein CheW compare
PS417_02950 -0.9 -2.1 tRNA-dihydrouridine synthase B compare
PS417_00195 -0.8 -1.8 hypothetical protein compare
PS417_08105 -0.8 -6.1 N-ethylammeline chlorohydrolase compare
PS417_16560 -0.8 -1.9 GNAT family acetyltransferase compare
PS417_09440 -0.8 -1.4 MerR family transcriptional regulator compare
PS417_14655 -0.8 -1.0 lysine transporter LysE compare
PS417_07710 -0.8 -3.2 membrane protein compare
PS417_28020 -0.8 -2.2 chorismate--pyruvate lyase compare
PS417_16080 -0.8 -1.8 AraC family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments

For motility_chemotaxis Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms