Experiment set18IT017 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_25; with MOPS

200 most important genes:

  gene name fitness t score description  
PP_5155 -6.8 -4.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4678 -6.8 -6.6 Ketol-acid reductoisomerase compare
PP_3511 -6.8 -4.7 Branched-chain-amino-acid aminotransferase compare
PP_0966 -6.7 -4.6 Histidinol dehydrogenase compare
PP_1079 -6.7 -4.6 Ornithine carbamoyltransferase compare
PP_1231 -6.4 -4.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1985 -6.2 -4.3 3-isopropylmalate dehydratase large subunit compare
PP_0293 -6.2 -2.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5098 -6.2 -6.0 methionine biosynthesis protein MetW compare
PP_0292 -6.2 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5097 -6.1 -11.8 homoserine O-acetyltransferase compare
PP_4782 -6.0 -4.1 Phosphomethylpyrimidine kinase compare
PP_0422 -6.0 -6.7 Indole-3-glycerol phosphate synthase compare
PP_4890 -5.9 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_2168 -5.9 -9.9 Transaldolase compare
PP_0965 -5.8 -11.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -5.8 -4.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1986 -5.6 -3.3 3-isopropylmalate dehydratase small subunit compare
PP_5348 -5.6 -9.3 Transcriptional regulator, LysR family compare
PP_0417 -5.6 -19.7 Anthranilate synthase component 1 compare
PP_1988 -5.5 -9.9 3-isopropylmalate dehydrogenase compare
PP_0082 -5.5 -3.8 tryptophan synthase alpha chain compare
PP_0184 -5.5 -3.8 Argininosuccinate lyase compare
PP_0083 -5.3 -3.7 tryptophan synthase beta chain compare
PP_5289 -5.3 -3.7 Acetylglutamate kinase compare
PP_0290 -5.2 -8.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5015 -5.2 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2371 -5.1 -6.9 Sulphite reductase hemoprotein, beta subunit compare
PP_1995 -5.1 -9.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0566 -5.0 -1.4 translation-related factor compare
PP_3098 -4.9 -1.3 conserved protein of unknown function compare
PP_4680 -4.9 -13.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -4.8 -11.9 Argininosuccinate synthase compare
PP_5346 -4.8 -9.6 pyruvate carboxylase subunit B compare
PP_0967 -4.7 -7.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0420 -4.7 -9.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0364 -4.7 -7.7 pimeloyl-[acp] methyl ester esterase compare
PP_0421 -4.7 -8.4 Anthranilate phosphoribosyltransferase compare
PP_4909 -4.6 -5.5 phosphoserine phosphatase compare
PP_5014 -4.5 -3.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_2327 -4.4 -6.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0957 -4.4 -1.7 D-arabinose 5-phosphate isomerase compare
PP_5347 -4.3 -12.0 pyruvate carboxylase subunit A compare
PP_0735 -4.3 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_5128 -4.2 -8.5 Dihydroxy-acid dehydratase compare
PP_1233 -4.1 -5.4 sulfurtransferase compare
PP_5303 -4.1 -5.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2720 -4.0 -1.5 conserved protein of unknown function compare
PP_5350 -3.9 -2.7 Transcriptional regulator, RpiR family compare
PP_3946 -3.9 -1.5 HTH-type transcriptional repressor NicR compare
PP_1025 -3.9 -8.7 2-isopropylmalate synthase compare
PP_3999 -3.8 -6.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1654 -3.8 -2.6 cysteine synthase B compare
PP_1022 -3.8 -2.6 glucose 6-phosphate-1-dehydrogenase compare
PP_4902 -3.8 -2.6 Oligoribonuclease compare
PP_1366 -3.7 -1.4 Transcriptional regulator MvaT, P16 subunit compare
PP_0365 -3.6 -6.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0363 -3.6 -8.6 8-amino-7-oxononanoate synthase compare
PP_4679 -3.5 -4.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -3.5 -6.0 Imidazoleglycerol-phosphate dehydratase compare
PP_2001 -3.4 -6.1 O-succinylhomoserine sulfhydrylase compare
PP_1362 -3.4 -5.1 pyruvate kinase II compare
PP_0362 -3.3 -8.8 Biotin synthase compare
PP_5104 -3.3 -5.8 thiazole synthase compare
PP_4984 -3.1 -5.9 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4977 -3.1 -8.7 5,10-methylenetetrahydrofolate reductase compare
PP_2388 -3.0 -2.8 Transporter, LysE family compare
PP_2328 -3.0 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_3840 -2.9 -1.6 conserved protein of unknown function compare
PP_4136 -2.9 -1.1 Transcriptional regulator, LuxR family compare
PP_2337 -2.9 -3.6 aconitate isomerase compare
PP_0048 -2.8 -1.3 conserved protein of unknown function compare
PP_4696 -2.8 -4.9 Nitrogen regulation protein NR(I) compare
PP_0848 -2.8 -2.9 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_4126 -2.7 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_4829 -2.7 -3.1 putative precorrin-3B synthase compare
PP_1054 -2.6 -1.9 Type II secretion pathway protein XcpZ compare
PP_3539 -2.6 -2.1 putative Transcriptional regulator compare
PP_4874 -2.6 -1.4 50S ribosomal protein L9 compare
PP_2414 -2.6 -2.0 conserved exported protein of unknown function compare
PP_0366 -2.5 -4.4 dethiobiotin synthetase compare
PP_5331 -2.5 -3.4 Long-chain acyl-CoA thioester hydrolase compare
PP_4804 -2.5 -3.9 RlpA-like lipoprotein compare
PP_1774 -2.5 -2.9 conserved exported protein of unknown function compare
PP_5295 -2.5 -1.8 conserved protein of unknown function compare
PP_4828 -2.4 -1.5 Precorrin-8X methylmutase compare
PP_1568 -2.4 -1.4 conserved protein of unknown function compare
PP_4964 -2.4 -4.2 D-erythrose 4-phosphate dehydrogenase compare
PP_4479 -2.4 -4.7 arginine N-succinyltransferase, subunit beta compare
PP_0291 -2.3 -1.7 conserved protein of unknown function compare
PP_2390 -2.3 -5.4 Transcriptional regulator, LysR family compare
PP_4338 -2.2 -4.5 Chemotaxis histidine kinase CheA compare
PP_0001 -2.2 -1.5 probable chromosome-partitioning protein compare
PP_2883 -2.2 -1.5 conserved protein of unknown function compare
PP_1912 -2.2 -4.1 Phosphate acyltransferase compare
PP_1677 -2.2 -3.8 Adenosyl-cobyric acid synthase compare
PP_0152 -2.1 -2.0 conserved exported protein of unknown function compare
PP_4922 -2.1 -5.8 Phosphomethylpyrimidine synthase compare
PP_2737 -2.1 -1.1 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_0787 -2.1 -2.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5675 -2.1 -2.8 conserved protein of unknown function compare
PP_4700 -2.1 -1.4 pantothenate synthetase compare
PP_1344 -2.0 -1.5 conserved protein of unknown function compare
PP_5095 -2.0 -1.1 pyrroline-5-carboxylate reductase compare
PP_2302 -1.9 -5.0 DNA-binding, ATP-dependent protease compare
PP_1215 -1.9 -1.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_5644 -1.9 -2.9 conserved membrane protein of unknown function compare
PP_4124 -1.9 -4.1 NADH-quinone oxidoreductase subunit G compare
PP_5486 -1.9 -1.5 conserved protein of unknown function compare
PP_5639 -1.8 -5.5 conserved exported protein of unknown function compare
PP_0065 -1.8 -2.5 NAD-binding component of TrK potassium transporter compare
PP_4340 -1.8 -2.2 response regulator for chemotactic signal transduction compare
PP_5203 -1.8 -3.5 5-formyltetrahydrofolate cyclo-ligase compare
PP_1678 -1.8 -2.2 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4480 -1.8 -5.1 arginine N-succinyltransferase, subunit alpha compare
PP_4285 -1.8 -3.2 5-hydroxyisourate hydrolase compare
PP_4143 -1.7 -2.9 conserved protein of unknown function compare
PP_0888 -1.7 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_3507 -1.7 -6.4 Aerobic cobaltochelatase subunit CobN compare
PP_3850 -1.7 -3.4 conserved protein of unknown function compare
PP_2370 -1.7 -1.6 conserved protein of unknown function compare
PP_4121 -1.7 -4.4 NADH-quinone oxidoreductase subunit C/D compare
PP_3417 -1.7 -3.6 D-gluconate transporter compare
PP_1994 -1.7 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_2820 -1.7 -2.2 HTH-type transcriptional regulator nfxB compare
PP_3102 -1.7 -2.6 conserved protein of unknown function compare
PP_5114 -1.7 -1.6 putative adenine methyltransferase compare
PP_4699 -1.7 -2.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1426 -1.7 -6.9 L-aspartate oxidase compare
PP_1681 -1.6 -5.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4130 -1.6 -3.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_3790 -1.6 -4.0 diaminopimelate epimerase compare
PP_2882 -1.6 -3.2 putative 2-hydroxychromene-2-carboxylate isomerase compare
PP_2681 -1.6 -1.4 coenzyme PQQ synthesis protein D compare
PP_4301 -1.6 -2.3 Pyruvate kinase compare
PP_4251 -1.6 -2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_4131 -1.6 -4.8 NADH-quinone oxidoreductase subunit N compare
PP_0393 -1.5 -1.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2592 -1.5 -2.8 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_1826 -1.5 -2.2 Hydrolase, isochorismatase family compare
PP_1676 -1.5 -2.9 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2121 -1.5 -1.2 putative Lipoprotein compare
PP_2999 -1.5 -1.2 Glyoxalase family protein compare
PP_0398 -1.5 -1.3 Thiosulfate sulfurtransferase GlpE compare
PP_1675 -1.5 -3.4 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2375 -1.5 -6.4 cobalamin-dependent methionine synthase compare
PP_3198 -1.4 -2.1 Ferredoxin, 2Fe-2S compare
PP_2631 -1.4 -1.6 putative cellulose biosynthesis, BcsF/YhjT compare
PP_0273 -1.4 -2.0 conserved protein of unknown function compare
PP_2972 -1.4 -1.7 conserved protein of unknown function compare
PP_3506 -1.4 -1.9 Magnesium chelatase, subunit ChII compare
PP_2793 -1.4 -1.3 Acyl-CoA dehydrogenase family protein compare
PP_1679 -1.4 -2.4 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4726 -1.4 -1.2 Chaperone protein DnaJ compare
PP_5176 -1.4 -1.7 conserved protein of unknown function compare
PP_3346 -1.4 -1.4 Nickel transporter ATP-binding protein compare
PP_1468 -1.4 -1.6 Tyrosine recombinase XerD compare
PP_4826 -1.4 -2.6 Precorrin-3B C17-methyltransferase compare
PP_4392 -1.4 -3.6 chemotaxis protein methyltransferase compare
PP_4129 -1.4 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4546 -1.3 -3.3 ATP-dependent helicase HrpA compare
PP_4379 -1.3 -2.4 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2118 -1.3 -1.7 conserved protein of unknown function compare
PP_4199 -1.3 -0.9 putative Lipoprotein compare
PP_5216 -1.3 -0.9 exopolyphosphatase compare
PP_1673 -1.3 -2.9 cobyrinate a,c-diamide synthase compare
PP_4684 -1.3 -3.4 conserved protein of unknown function with kinase-like domain compare
PP_1048 -1.3 -1.8 putative protein secretion protein for export compare
PP_3808 -1.3 -1.1 Antibiotic synthesis protein MbtH compare
PP_1303 -1.3 -2.7 Sulfate adenylyltransferase subunit 2 compare
PP_4993 -1.3 -2.7 Glutathione synthetase compare
PP_0547 -1.3 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0630 -1.3 -0.9 DNA gyrase inhibitor YacG compare
PP_5537 -1.3 -1.6 conserved membrane protein of unknown function compare
PP_4787 -1.3 -1.1 putative protein with nucleoside triphosphate hydrolase domain compare
PP_0406 -1.3 -1.7 Nucleotidyltransferase family protein compare
PP_4824 -1.3 -4.0 Sensor histidine kinase/response regulator compare
PP_4827 -1.3 -4.6 Precorrin-2 C(20)-methyltransferase compare
PP_0725 -1.2 -2.5 conserved hypothetical TPR repeat protein compare
PP_4271 -1.2 -0.8 conserved protein of unknown function compare
PP_2416 -1.2 -1.5 putative Iron ABC transporter, ATP-binding protein compare
PP_3241 -1.2 -1.1 conserved exported protein of unknown function compare
PP_1672 -1.2 -2.3 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_2345 -1.2 -2.0 conserved exported protein of unknown function compare
PP_3245 -1.2 -1.3 conserved protein of unknown function compare
PP_0164 -1.2 -2.5 conserved protein of unknown function compare
PP_4693 -1.2 -3.3 RNA polymerase-binding transcription factor DksA compare
PP_0119 -1.2 -1.7 putative zinc uptake regulation protein ZUR compare
PP_0114 -1.2 -2.2 methionine ABC transporter ATP-binding protein compare
PP_4785 -1.2 -4.4 conserved exported protein of unknown function compare
PP_2878 -1.2 -1.4 conserved protein of unknown function compare
PP_0673 -1.2 -1.5 conserved protein of unknown function compare
PP_4914 -1.2 -2.2 putative phytase-like protein compare
PP_0719 -1.2 -0.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5075 -1.2 -4.5 glutamate synthase (NADPH) beta subunit compare
PP_4529 -1.1 -2.0 conserved protein of unknown function compare
PP_4120 -1.1 -2.1 NADH-quinone oxidoreductase subunit B compare
PP_5SB -1.1 -0.8 5S ribosomal RNA compare
PP_1878 -1.1 -3.8 conserved protein of unknown function conserved
PP_2928 -1.1 -3.7 Saccharopine dehydrogenase compare


Specific Phenotypes

For 1 genes in this experiment

For temperature shift D-Glucose in Pseudomonas putida KT2440

For temperature shift D-Glucose across organisms