Experiment set18IT015 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_20785 -4.7 -4.4 transcriptional regulator compare
PS417_27795 -3.7 -1.2 orotate phosphoribosyltransferase compare
PS417_23545 -3.7 -3.6 gamma-glutamyl kinase compare
PS417_03560 -3.7 -2.3 GTP-binding protein compare
PS417_24745 -3.6 -3.4 gamma-glutamyl phosphate reductase compare
PS417_08125 -3.3 -1.0 prephenate dehydratase compare
PS417_08135 -3.2 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26985 -2.9 -4.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_21480 -2.8 -1.9 23S rRNA pseudouridylate synthase compare
PS417_03260 -2.7 -1.6 5S ribosomal RNA compare
PS417_07560 -2.6 -2.3 universal stress protein UspA compare
PS417_26900 -2.5 -2.6 L-cystine transporter tcyP compare
PS417_27865 -2.4 -2.1 LysR family transcriptional regulator compare
PS417_16005 -2.4 -3.4 ATPase compare
PS417_02975 -2.2 -3.2 3-dehydroquinate dehydratase compare
PS417_14065 -2.1 -7.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_16555 -2.1 -2.6 cupin compare
PS417_21630 -2.1 -2.4 magnesium transporter compare
PS417_27870 -2.0 -4.2 ATP-dependent DNA helicase RecG compare
PS417_20985 -2.0 -1.4 porin compare
PS417_07875 -2.0 -1.3 hypothetical protein compare
PS417_27195 -2.0 -1.6 N-acetylglutamate synthase compare
PS417_19350 -2.0 -4.1 GTP cyclohydrolase compare
PS417_23915 -1.8 -5.9 pantoate--beta-alanine ligase compare
PS417_12805 -1.8 -8.9 glycogen branching protein compare
PS417_23390 -1.7 -6.2 ubiquinol oxidase subunit II compare
PS417_23025 -1.7 -5.2 murein transglycosylase compare
PS417_05695 -1.7 -5.7 transcriptional regulator compare
PS417_06680 -1.7 -6.6 nuclease PIN compare
PS417_22565 -1.7 -0.9 formyltetrahydrofolate deformylase compare
PS417_05815 -1.7 -4.3 recombinase RecA compare
PS417_12855 -1.7 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26990 -1.7 -1.0 RNA pyrophosphohydrolase compare
PS417_01565 -1.7 -6.1 imidazole glycerol phosphate synthase compare
PS417_02415 -1.6 -3.2 phosphoserine phosphatase compare
PS417_02555 -1.6 -9.8 exoribonuclease R compare
PS417_17070 -1.6 -2.3 RNA polymerase subunit sigma-24 compare
PS417_02560 -1.6 -1.3 23S rRNA methyltransferase compare
PS417_27800 -1.6 -2.1 exodeoxyribonuclease III compare
PS417_21430 -1.6 -2.1 3-oxoacyl-ACP synthase compare
PS417_25315 -1.6 -3.5 membrane protein compare
PS417_22445 -1.5 -2.8 ATP-dependent DNA helicase RuvB compare
PS417_04365 -1.5 -1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23810 -1.5 -8.9 acetolactate synthase 3 catalytic subunit compare
PS417_01580 -1.5 -1.6 imidazole glycerol phosphate synthase compare
PS417_19955 -1.5 -2.3 hypothetical protein compare
PS417_06200 -1.5 -4.4 protein-PII uridylyltransferase compare
PS417_19835 -1.5 -1.5 flagellar biosynthesis protein FliS compare
PS417_23380 -1.5 -3.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_01855 -1.5 -3.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_07710 -1.5 -4.7 membrane protein compare
PS417_21575 -1.5 -6.7 chemotaxis protein compare
PS417_01915 -1.5 -0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_27040 -1.5 -2.7 3-phosphoglycerate dehydrogenase compare
PS417_16510 -1.4 -3.8 Clp protease ClpX compare
PS417_26730 -1.4 -0.6 pyrroline-5-carboxylate reductase compare
PS417_18310 -1.4 -1.1 hypothetical protein compare
PS417_07640 -1.4 -2.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_04220 -1.4 -1.6 4-carboxymuconolactone decarboxylase compare
PS417_08540 -1.4 -2.3 RNA helicase compare
PS417_05830 -1.4 -4.0 hypothetical protein compare
PS417_21655 -1.3 -1.2 aspartate kinase compare
PS417_23770 -1.3 -0.9 exodeoxyribonuclease V subunit alpha compare
PS417_06205 -1.3 -6.3 methionine aminopeptidase compare
PS417_15085 -1.3 -3.6 ATPase AAA compare
PS417_19825 -1.3 -7.7 ATPase AAA compare
PS417_28265 -1.3 -1.7 pyridoxamine kinase compare
PS417_23370 -1.3 -3.3 protoheme IX farnesyltransferase compare
PS417_28070 -1.3 -6.8 phosphate ABC transporter ATP-binding protein compare
PS417_07170 -1.3 -3.1 hypothetical protein compare
PS417_03935 -1.3 -2.2 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_01575 -1.3 -2.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02485 -1.3 -3.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_19860 -1.2 -8.3 flagellar hook protein FlgL compare
PS417_08685 -1.2 -1.7 flagellar hook-length control protein FliK compare
PS417_13510 -1.2 -1.2 polyketide cyclase compare
PS417_22350 -1.2 -2.2 Fis family transcriptional regulator compare
PS417_06375 -1.2 -0.9 deoxycytidine triphosphate deaminase compare
PS417_05560 -1.2 -1.9 ABC transporter compare
PS417_23805 -1.2 -5.0 acetolactate synthase 3 regulatory subunit compare
PS417_16490 -1.2 -1.7 cell division protein FtsK compare
PS417_27425 -1.2 -5.7 exopolyphosphatase compare
PS417_23910 -1.2 -4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_28450 -1.2 -2.6 XRE family transcriptional regulator compare
PS417_15915 -1.2 -1.3 hypothetical protein compare
PS417_06500 -1.2 -1.3 hypothetical protein compare
PS417_03380 -1.1 -1.2 hypothetical protein compare
PS417_21595 -1.1 -2.6 flagellar biosynthesis protein FlgN compare
PS417_04435 -1.1 -6.4 uracil phosphoribosyltransferase compare
PS417_01850 -1.1 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_19865 -1.1 -6.1 flagellar hook protein FlgK compare
PS417_22450 -1.1 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_28220 -1.1 -2.3 LysR family transcriptional regulator compare
PS417_23385 -1.1 -5.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_06530 -1.1 -1.9 membrane protein compare
PS417_22115 -1.1 -2.8 transcriptional regulator compare
PS417_16515 -1.1 -1.7 Clp protease ClpS compare
PS417_17980 -1.1 -1.7 ABC transporter permease compare
PS417_21360 -1.1 -1.0 termination factor Rho compare
PS417_02000 -1.1 -6.7 glutamate synthase compare
PS417_00085 -1.1 -2.5 16S rRNA methyltransferase compare
PS417_23375 -1.1 -1.7 cytochrome C oxidase compare
PS417_08155 -1.1 -1.1 integration host factor subunit beta compare
PS417_24585 -1.1 -6.5 AMP nucleosidase compare
PS417_27245 -1.1 -2.0 aminotransferase DegT compare
PS417_07140 -1.1 -2.7 peptidase M48 compare
PS417_23775 -1.1 -1.8 exodeoxyribonuclease V subunit beta compare
PS417_05785 -1.1 -2.4 tail protein compare
PS417_15095 -1.0 -3.0 hypothetical protein compare
PS417_02005 -1.0 -5.5 glutamate synthase compare
PS417_27515 -1.0 -3.3 heme biosynthesis protein HemY compare
PS417_19850 -1.0 -5.3 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19840 -1.0 -5.9 flagellar cap protein FliD compare
PS417_27520 -1.0 -2.5 uroporphyrin-III methyltransferase compare
PS417_22840 -1.0 -1.6 tRNA-Met compare
PS417_21585 -1.0 -4.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19695 -1.0 -4.8 flagellar biosynthesis sigma factor compare
PS417_20775 -1.0 -3.4 coproporphyrinogen III oxidase compare
PS417_19880 -1.0 -5.3 flagellar basal body L-ring protein compare
PS417_19830 -1.0 -2.7 flagellar assembly protein FliT compare
PS417_10095 -0.9 -1.7 hypothetical protein compare
PS417_01405 -0.9 -2.1 sugar transporter compare
PS417_15105 -0.9 -3.3 membrane protein compare
PS417_21555 -0.9 -4.4 flagellar hook protein FlgE compare
PS417_26370 -0.9 -2.2 RNA helicase compare
PS417_02895 -0.9 -1.2 precorrin-6Y C5,15-methyltransferase compare
PS417_28080 -0.9 -6.4 phosphate ABC transporter permease compare
PS417_15495 -0.9 -2.2 FAD-dependent oxidoreductase compare
PS417_24710 -0.9 -5.0 lipoprotein compare
PS417_10720 -0.9 -2.6 chemotaxis protein CheY compare
PS417_05140 -0.9 -1.6 dipicolinate synthase compare
PS417_19765 -0.9 -3.5 flagellar hook-length control protein compare
PS417_05790 -0.9 -1.7 hypothetical protein compare
PS417_19870 -0.9 -2.3 flagellar rod assembly protein FlgJ compare
PS417_20665 -0.9 -4.8 hypothetical protein compare
PS417_07400 -0.9 -2.4 hypothetical protein compare
PS417_18715 -0.8 -4.7 peptidase M4 compare
PS417_15100 -0.8 -1.9 BatB protein compare
PS417_24895 -0.8 -1.1 hypothetical protein compare
PS417_11400 -0.8 -1.5 phosphoglycerate mutase compare
PS417_26815 -0.8 -1.4 peptidase M16 compare
PS417_19690 -0.8 -5.1 histidine kinase compare
PS417_20160 -0.8 -2.9 cysteine synthase compare
PS417_27275 -0.8 -4.1 hypothetical protein compare
PS417_15875 -0.8 -1.3 LuxR family transcriptional regulator compare
PS417_16520 -0.8 -1.3 cold-shock protein compare
PS417_11535 -0.8 -1.8 nicotinate phosphoribosyltransferase compare
PS417_21570 -0.8 -3.4 flagellar basal body rod protein FlgB compare
PS417_16370 -0.8 -3.0 chemotaxis protein CheY compare
PS417_01605 -0.8 -0.8 phosphoglycerate mutase compare
PS417_04060 -0.8 -3.1 dipeptide ABC transporter, permease component (from data) compare
PS417_02340 -0.8 -3.0 LysR family transcriptional regulator compare
PS417_27835 -0.8 -3.8 endoribonuclease compare
PS417_00385 -0.8 -0.7 Fur family transcriptional regulator compare
PS417_12695 -0.8 -2.7 mannitol dehydrogenase compare
PS417_17000 -0.8 -0.8 MerR family transcriptional regulator compare
PS417_03780 -0.8 -1.5 general secretion pathway protein GspH compare
PS417_21565 -0.8 -2.6 flagellar basal body rod protein FlgC compare
PS417_23890 -0.8 -2.7 ATPase compare
PS417_27315 -0.8 -1.0 hypothetical protein compare
PS417_02800 -0.8 -1.3 acetyltransferase compare
PS417_16020 -0.8 -2.1 LysR family transcriptional regulator compare
PS417_24155 -0.8 -0.9 ATP-binding protein compare
PS417_19725 -0.7 -2.7 flagellar biosynthesis protein FlhB compare
PS417_01560 -0.7 -1.4 imidazoleglycerol-phosphate dehydratase compare
PS417_18445 -0.7 -1.8 glycerol-3-phosphatase compare
PS417_26655 -0.7 -3.6 chemotaxis protein compare
PS417_01030 -0.7 -1.2 glutamine ABC transporter substrate-binding protein compare
PS417_18590 -0.7 -2.4 SAM-dependent methyltransferase compare
PS417_21000 -0.7 -1.2 CrfX protein compare
PS417_23250 -0.7 -3.0 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_04390 -0.7 -1.6 toluene tolerance protein compare
PS417_11060 -0.7 -2.5 transporter compare
PS417_02775 -0.7 -3.1 heat-shock protein compare
PS417_08580 -0.7 -2.9 histidine kinase compare
PS417_04420 -0.7 -3.8 histidinol dehydrogenase compare
PS417_04290 -0.7 -2.4 hypothetical protein compare
PS417_18720 -0.7 -2.9 endonuclease compare
PS417_08730 -0.7 -1.0 cytochrome C compare
PS417_17630 -0.7 -1.2 RNA polymerase sigma factor compare
PS417_01950 -0.7 -3.9 malate dehydrogenase compare
PS417_19885 -0.7 -2.0 flagellar basal body rod protein FlgG compare
PS417_13620 -0.7 -1.2 thermostable hemolysin compare
PS417_05025 -0.7 -0.9 maleylacetoacetate isomerase compare
PS417_19650 -0.7 -2.7 chemotaxis protein CheW compare
PS417_08990 -0.7 -1.7 ABC transporter substrate-binding protein compare
PS417_04375 -0.7 -1.0 ABC transporter ATP-binding protein compare
PS417_21065 -0.7 -0.9 3-methylitaconate isomerase compare
PS417_10480 -0.7 -0.8 glutathione S-transferase compare
PS417_21425 -0.7 -1.0 4-amino-4-deoxychorismate lyase compare
PS417_22130 -0.7 -2.4 glucose/xylose ABC transporter, ATPase component (from data) compare
PS417_20700 -0.7 -3.0 cbb3-type cytochrome c oxidase subunit I compare
PS417_26040 -0.6 -2.1 malate synthase compare
PS417_05635 -0.6 -2.4 membrane protein compare
PS417_02270 -0.6 -2.5 carbamoyltransferase compare
PS417_00380 -0.6 -1.2 zinc ABC transporter ATP-binding protein compare
PS417_17490 -0.6 -1.2 ABC transporter ATP-binding protein compare
PS417_13505 -0.6 -1.8 alpha/beta hydrolase compare
PS417_09330 -0.6 -1.2 NAD(P)H-quinone oxidoreductase compare
PS417_09325 -0.6 -1.8 peptidase S41 compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments

For motility_chemotaxis Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms