Experiment set18IT014 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_19745 -10.4 -4.0 flagellar assembly protein FliO compare
PS417_21570 -10.0 -4.0 flagellar basal body rod protein FlgB compare
PS417_19740 -9.6 -3.6 flagellar biosynthesis protein flip compare
PS417_19660 -9.2 -5.4 cobalamin biosynthesis protein CobQ compare
PS417_19825 -9.2 -15.2 ATPase AAA compare
PS417_01575 -9.1 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19735 -9.0 -3.5 flagellar biosynthesis protein FliQ compare
PS417_01635 -8.7 -4.1 nitrogen regulation protein NR(I) compare
PS417_27835 -8.7 -4.5 endoribonuclease compare
PS417_19765 -8.7 -5.4 flagellar hook-length control protein compare
PS417_19880 -8.5 -5.8 flagellar basal body L-ring protein compare
PS417_24710 -8.5 -5.6 lipoprotein compare
PS417_21585 -8.2 -5.7 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19730 -8.2 -2.9 flagellar biosynthesis protein FliR compare
PS417_18540 -8.1 -3.6 colicin V production CvpA compare
PS417_05635 -8.1 -4.7 membrane protein compare
PS417_18600 -8.1 -2.8 isopropylmalate isomerase compare
PS417_21595 -8.0 -3.1 flagellar biosynthesis protein FlgN compare
PS417_22850 -8.0 -5.1 virulence factor family protein compare
PS417_21565 -8.0 -3.6 flagellar basal body rod protein FlgC compare
PS417_19725 -7.9 -4.1 flagellar biosynthesis protein FlhB compare
PS417_26740 -7.8 -5.2 homoserine acetyltransferase compare
PS417_19870 -7.6 -3.4 flagellar rod assembly protein FlgJ compare
PS417_04415 -7.4 -4.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_19650 -7.4 -3.8 chemotaxis protein CheW compare
PS417_19710 -7.3 -12.2 flagellar biosynthesis protein FlhA compare
PS417_19860 -7.3 -5.0 flagellar hook protein FlgL compare
PS417_23805 -7.2 -3.8 acetolactate synthase 3 regulatory subunit compare
PS417_25725 -7.2 -12.1 anthranilate synthase component I compare
PS417_14065 -7.2 -4.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19655 -7.2 -3.4 chemotaxis protein CheW compare
PS417_02210 -7.0 -7.2 diguanylate cyclase compare
PS417_19795 -6.9 -5.8 flagellar assembly protein FliH compare
PS417_01795 -6.9 -10.5 glucosyltransferase MdoH compare
PS417_19695 -6.9 -7.1 flagellar biosynthesis sigma factor compare
PS417_02510 -6.8 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_19755 -6.6 -1.4 flagellar motor switch protein FliM compare
PS417_25715 -6.6 -3.9 anthranilate phosphoribosyltransferase compare
PS417_23800 -6.5 -7.8 ketol-acid reductoisomerase compare
PS417_18585 -6.5 -4.1 3-isopropylmalate dehydrogenase compare
PS417_27040 -6.5 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_19675 -6.4 -3.8 chemotaxis protein CheY compare
PS417_01640 -6.4 -3.5 histidine kinase compare
PS417_19800 -6.4 -1.8 flagellar motor switch protein FliG compare
PS417_02000 -6.3 -4.4 glutamate synthase compare
PS417_19705 -6.3 -2.5 flagellar biosynthesis regulator FlhF compare
PS417_19840 -6.3 -9.6 flagellar cap protein FliD compare
PS417_19630 -6.1 -2.7 LuxR family transcriptional regulator compare
PS417_20105 -6.1 -21.3 glycosyl transferase compare
PS417_01855 -6.1 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_27705 -6.0 -1.2 amino acid dehydrogenase compare
PS417_01955 -6.0 -4.1 peptidase compare
PS417_04420 -6.0 -9.3 histidinol dehydrogenase compare
PS417_19865 -5.9 -8.6 flagellar hook protein FlgK compare
PS417_23950 -5.9 -2.0 polynucleotide phosphorylase/polyadenylase compare
PS417_02005 -5.9 -10.0 glutamate synthase compare
PS417_19785 -5.8 -2.5 flagellar biogenesis protein compare
PS417_25720 -5.8 -6.4 anthranilate synthase component II compare
PS417_18595 -5.8 -3.2 3-isopropylmalate dehydratase compare
PS417_21575 -5.7 -5.5 chemotaxis protein compare
PS417_26995 -5.6 -9.3 phosphoserine phosphatase compare
PS417_22845 -5.5 -15.5 membrane protein compare
PS417_19805 -5.5 -2.7 flagellar M-ring protein FliF compare
PS417_19790 -5.5 -3.5 ATP synthase compare
PS417_12855 -5.5 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21125 -5.5 -6.3 phosphoadenosine phosphosulfate reductase compare
PS417_10720 -5.5 -6.7 chemotaxis protein CheY compare
PS417_28220 -5.5 -2.4 LysR family transcriptional regulator compare
PS417_21555 -5.5 -7.8 flagellar hook protein FlgE compare
PS417_19690 -5.4 -3.0 histidine kinase compare
PS417_18545 -5.4 -2.2 cell division protein compare
PS417_23545 -5.4 -2.2 gamma-glutamyl kinase compare
PS417_19885 -5.4 -1.5 flagellar basal body rod protein FlgG compare
PS417_01850 -5.4 -2.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_05595 -5.2 -8.4 ornithine carbamoyltransferase compare
PS417_22775 -5.2 -8.5 histidine kinase compare
PS417_19850 -5.2 -8.5 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_20095 -5.2 -15.9 hypothetical protein compare
PS417_27435 -5.2 -8.8 polyphosphate kinase compare
PS417_09210 -5.0 -1.8 TetR family transcriptional regulator compare
PS417_21390 -5.0 -4.6 hypothetical protein compare
PS417_07595 -5.0 -4.1 PasA protein compare
PS417_02415 -5.0 -3.7 phosphoserine phosphatase compare
PS417_18530 -5.0 -4.8 O-succinylhomoserine sulfhydrylase compare
PS417_04475 -4.9 -4.9 hypothetical protein compare
PS417_00045 -4.9 -1.4 glycerol acyltransferase compare
PS417_07170 -4.8 -3.8 hypothetical protein compare
PS417_06200 -4.8 -6.5 protein-PII uridylyltransferase compare
PS417_00185 -4.8 -3.4 tryptophan synthase subunit beta compare
PS417_05885 -4.7 -5.6 potassium transporter Kup compare
PS417_05575 -4.7 -11.5 Glycerol kinase (EC 2.7.1.30) (from data) compare
PS417_25645 -4.7 -6.8 peptidase M23 compare
PS417_21000 -4.6 -2.3 CrfX protein compare
PS417_08540 -4.6 -1.9 RNA helicase compare
PS417_21430 -4.6 -2.1 3-oxoacyl-ACP synthase compare
PS417_01990 -4.6 -5.7 cell division protein compare
PS417_17215 -4.5 -3.2 peptidylprolyl isomerase compare
PS417_06530 -4.5 -2.8 membrane protein compare
PS417_19835 -4.5 -1.3 flagellar biosynthesis protein FliS compare
PS417_06375 -4.5 -0.9 deoxycytidine triphosphate deaminase compare
PS417_23110 -4.5 -6.9 2-isopropylmalate synthase compare
PS417_21480 -4.4 -1.5 23S rRNA pseudouridylate synthase compare
PS417_16490 -4.4 -1.3 cell division protein FtsK compare
PS417_18560 -4.4 -3.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_27815 -4.4 -1.5 hypothetical protein compare
PS417_23810 -4.4 -7.5 acetolactate synthase 3 catalytic subunit compare
PS417_05975 -4.3 -0.9 chemotaxis protein CheW compare
PS417_02485 -4.3 -5.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_01790 -4.3 -5.6 glucan biosynthesis protein G compare
PS417_19685 -4.2 -4.3 protein phosphatase compare
PS417_23995 -4.2 -0.8 preprotein translocase subunit SecG compare
PS417_27870 -4.2 -4.1 ATP-dependent DNA helicase RecG compare
PS417_16370 -4.2 -6.2 chemotaxis protein CheY compare
PS417_25710 -4.1 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_08170 -4.1 -10.6 capsular biosynthesis protein compare
PS417_00160 -4.1 -3.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_22565 -4.0 -0.8 formyltetrahydrofolate deformylase compare
PS417_21270 -4.0 -1.6 translation initiation factor 2 compare
PS417_22450 -4.0 -1.4 ATP-dependent DNA helicase RuvA compare
PS417_03380 -3.9 -1.1 hypothetical protein compare
PS417_04275 -3.9 -16.5 hypothetical protein compare
PS417_22410 -3.9 -4.9 hypothetical protein compare
PS417_20160 -3.9 -3.4 cysteine synthase compare
PS417_18690 -3.9 -3.0 aromatic amino acid aminotransferase compare
PS417_24745 -3.9 -1.7 gamma-glutamyl phosphate reductase compare
PS417_01580 -3.8 -1.1 imidazole glycerol phosphate synthase compare
PS417_01565 -3.8 -1.9 imidazole glycerol phosphate synthase compare
PS417_09085 -3.8 -1.1 hypothetical protein compare
PS417_27195 -3.8 -1.1 N-acetylglutamate synthase compare
PS417_27795 -3.7 -0.7 orotate phosphoribosyltransferase compare
PS417_20650 -3.7 -8.8 hypothetical protein compare
PS417_26745 -3.7 -4.1 methionine biosynthesis protein MetW compare
PS417_27710 -3.7 -7.7 AsnC family transcriptional regulator compare
PS417_19645 -3.7 -3.1 chemotaxis protein compare
PS417_19665 -3.6 -2.8 flagellar motor protein MotD compare
PS417_22445 -3.6 -3.5 ATP-dependent DNA helicase RuvB compare
PS417_20090 -3.6 -7.9 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_26890 -3.6 -4.6 dihydroxy-acid dehydratase compare
PS417_18310 -3.5 -1.2 hypothetical protein compare
PS417_19820 -3.5 -6.1 histidine kinase compare
PS417_23385 -3.5 -9.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_00180 -3.4 -2.4 tryptophan synthase subunit alpha compare
PS417_27010 -3.4 -9.5 threonine dehydratase compare
PS417_22780 -3.4 -2.6 XRE family transcriptional regulator compare
PS417_05580 -3.4 -8.4 glycerol uptake facilitator GlpF compare
PS417_00705 -3.4 -1.6 MarR family transcriptional regulator compare
PS417_22520 -3.4 -1.3 histidine kinase compare
PS417_08125 -3.4 -0.7 prephenate dehydratase compare
PS417_23915 -3.3 -4.5 pantoate--beta-alanine ligase compare
PS417_07095 -3.3 -11.3 histidine kinase compare
PS417_19720 -3.3 -1.6 DNA-binding protein compare
PS417_06620 -3.3 -2.3 hypothetical protein compare
PS417_23375 -3.3 -1.6 cytochrome C oxidase compare
PS417_23105 -3.2 -1.6 hypothetical protein compare
PS417_12310 -3.2 -8.8 methionine synthase compare
PS417_07575 -3.1 -3.8 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_28080 -3.1 -9.4 phosphate ABC transporter permease compare
PS417_02670 -3.0 -3.0 ABC transporter compare
PS417_08580 -3.0 -7.4 histidine kinase compare
PS417_12005 -2.9 -2.1 hypothetical protein compare
PS417_01590 -2.9 -2.0 polysaccharide deacetylase compare
PS417_26985 -2.9 -2.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_21090 -2.9 -3.0 hypothetical protein compare
PS417_28070 -2.9 -6.6 phosphate ABC transporter ATP-binding protein compare
PS417_00175 -2.9 -1.0 CigR compare
PS417_02070 -2.9 -1.0 membrane protein compare
PS417_02270 -2.8 -4.4 carbamoyltransferase compare
PS417_24800 -2.8 -4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_04385 -2.8 -3.4 organic solvent ABC transporter substrate-binding protein compare
PS417_16990 -2.8 -3.0 acyl-CoA dehydrogenase compare
PS417_19625 -2.8 -2.0 histidine kinase compare
PS417_21655 -2.7 -0.7 aspartate kinase compare
PS417_03560 -2.7 -1.4 GTP-binding protein compare
PS417_04910 -2.7 -6.2 amino acid ABC transporter permease compare
PS417_23380 -2.7 -2.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_26225 -2.7 -3.9 electron transfer flavoprotein subunit beta compare
PS417_21100 -2.7 -8.9 alpha-L-glutamate ligase compare
PS417_17240 -2.6 -3.5 trigger factor compare
PS417_23370 -2.6 -3.9 protoheme IX farnesyltransferase compare
PS417_00510 -2.6 -1.0 membrane protein compare
PS417_28265 -2.6 -1.8 pyridoxamine kinase compare
PS417_12290 -2.6 -5.4 sulfite reductase compare
PS417_07165 -2.6 -3.6 dihydrodipicolinate synthase compare
PS417_06680 -2.6 -8.1 nuclease PIN compare
PS417_19620 -2.6 -1.5 hypothetical protein compare
PS417_26990 -2.6 -0.7 RNA pyrophosphohydrolase compare
PS417_02440 -2.6 -1.8 flagellar motor protein MotB compare
PS417_02805 -2.5 -1.8 urease subunit gamma compare
PS417_03930 -2.5 -9.0 thymidine phosphorylase compare
PS417_02255 -2.5 -1.9 lipopolysaccharide kinase compare
PS417_03670 -2.5 -5.6 MerR family transcriptional regulator compare
PS417_26695 -2.5 -1.2 uracil phosphoribosyltransferase compare
PS417_04905 -2.5 -4.9 amino acid ABC transporter permease compare
PS417_27185 -2.4 -8.7 porin compare
PS417_27305 -2.4 -6.5 5-formyltetrahydrofolate cyclo-ligase compare
PS417_20080 -2.4 -3.2 peptidase P60 compare
PS417_13800 -2.4 -2.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_07140 -2.4 -3.5 peptidase M48 compare
PS417_22620 -2.4 -3.4 pyruvate kinase compare
PS417_01560 -2.4 -2.1 imidazoleglycerol-phosphate dehydratase compare


Specific Phenotypes

For 25 genes in this experiment

For motility_chemotaxis Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 in Pseudomonas simiae WCS417

For motility_chemotaxis Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 across organisms