Experiment set18IT013 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_27870 -4.5 -5.3 ATP-dependent DNA helicase RecG compare
PS417_22565 -3.9 -1.4 formyltetrahydrofolate deformylase compare
PS417_27795 -3.7 -1.3 orotate phosphoribosyltransferase compare
PS417_24745 -3.6 -3.5 gamma-glutamyl phosphate reductase compare
PS417_08125 -3.3 -1.1 prephenate dehydratase compare
PS417_26985 -3.2 -6.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_18310 -2.9 -2.3 hypothetical protein compare
PS417_14065 -2.9 -9.8 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_02415 -2.8 -5.3 phosphoserine phosphatase compare
PS417_26990 -2.6 -1.2 RNA pyrophosphohydrolase compare
PS417_23545 -2.5 -2.6 gamma-glutamyl kinase compare
PS417_19650 -2.4 -6.9 chemotaxis protein CheW compare
PS417_02485 -2.3 -5.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23950 -2.3 -2.7 polynucleotide phosphorylase/polyadenylase compare
PS417_01575 -2.2 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19675 -2.1 -7.4 chemotaxis protein CheY compare
PS417_19740 -2.1 -5.1 flagellar biosynthesis protein flip compare
PS417_06375 -2.1 -1.2 deoxycytidine triphosphate deaminase compare
PS417_21655 -2.1 -1.3 aspartate kinase compare
PS417_04650 -2.1 -0.9 D-alanine--D-alanine ligase compare
PS417_21575 -1.9 -7.0 chemotaxis protein compare
PS417_19850 -1.9 -8.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_20785 -1.9 -3.8 transcriptional regulator compare
PS417_06680 -1.9 -7.4 nuclease PIN compare
PS417_19790 -1.9 -2.6 ATP synthase compare
PS417_23370 -1.9 -5.5 protoheme IX farnesyltransferase compare
PS417_19860 -1.8 -11.4 flagellar hook protein FlgL compare
PS417_19350 -1.8 -3.4 GTP cyclohydrolase compare
PS417_27195 -1.8 -1.8 N-acetylglutamate synthase compare
PS417_08135 -1.8 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_16510 -1.8 -4.3 Clp protease ClpX compare
PS417_16555 -1.7 -2.4 cupin compare
PS417_19735 -1.7 -3.9 flagellar biosynthesis protein FliQ compare
PS417_27800 -1.7 -2.0 exodeoxyribonuclease III compare
PS417_01565 -1.7 -5.6 imidazole glycerol phosphate synthase compare
PS417_12805 -1.7 -9.7 glycogen branching protein compare
PS417_01920 -1.7 -1.0 ATP-dependent protease subunit HslV compare
PS417_19800 -1.7 -2.6 flagellar motor switch protein FliG compare
PS417_19835 -1.7 -2.1 flagellar biosynthesis protein FliS compare
PS417_00650 -1.7 -1.0 LysR family transcriptional regulator compare
PS417_21555 -1.7 -8.9 flagellar hook protein FlgE compare
PS417_13305 -1.6 -1.9 hypothetical protein compare
PS417_19885 -1.6 -3.8 flagellar basal body rod protein FlgG compare
PS417_19665 -1.6 -4.7 flagellar motor protein MotD compare
PS417_03260 -1.6 -1.7 5S ribosomal RNA compare
PS417_03560 -1.6 -1.8 GTP-binding protein compare
PS417_20705 -1.6 -3.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_19880 -1.6 -7.7 flagellar basal body L-ring protein compare
PS417_21570 -1.6 -6.0 flagellar basal body rod protein FlgB compare
PS417_10720 -1.6 -3.3 chemotaxis protein CheY compare
PS417_21595 -1.6 -4.1 flagellar biosynthesis protein FlgN compare
PS417_19660 -1.5 -4.1 cobalamin biosynthesis protein CobQ compare
PS417_19865 -1.5 -8.1 flagellar hook protein FlgK compare
PS417_19840 -1.5 -7.7 flagellar cap protein FliD compare
PS417_02005 -1.5 -8.0 glutamate synthase compare
PS417_02975 -1.5 -3.0 3-dehydroquinate dehydratase compare
PS417_27040 -1.5 -3.7 3-phosphoglycerate dehydrogenase compare
PS417_12855 -1.5 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27865 -1.5 -2.0 LysR family transcriptional regulator compare
PS417_19805 -1.5 -4.9 flagellar M-ring protein FliF compare
PS417_00045 -1.5 -1.9 glycerol acyltransferase compare
PS417_02555 -1.5 -8.7 exoribonuclease R compare
PS417_22570 -1.5 -1.1 H-NS histone compare
PS417_16370 -1.5 -5.8 chemotaxis protein CheY compare
PS417_07165 -1.5 -6.7 dihydrodipicolinate synthase compare
PS417_08540 -1.5 -2.6 RNA helicase compare
PS417_19655 -1.5 -3.3 chemotaxis protein CheW compare
PS417_19765 -1.5 -6.2 flagellar hook-length control protein compare
PS417_24710 -1.5 -6.0 lipoprotein compare
PS417_19705 -1.5 -3.2 flagellar biosynthesis regulator FlhF compare
PS417_21565 -1.5 -4.7 flagellar basal body rod protein FlgC compare
PS417_01915 -1.4 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_20985 -1.4 -1.3 porin compare
PS417_01850 -1.4 -2.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23025 -1.4 -5.9 murein transglycosylase compare
PS417_19870 -1.4 -4.0 flagellar rod assembly protein FlgJ compare
PS417_02000 -1.4 -8.1 glutamate synthase compare
PS417_24500 -1.4 -3.2 DEAD/DEAH box helicase compare
PS417_19690 -1.4 -6.2 histidine kinase compare
PS417_08220 -1.4 -1.2 epimerase compare
PS417_23995 -1.4 -0.9 preprotein translocase subunit SecG compare
PS417_13510 -1.4 -1.4 polyketide cyclase compare
PS417_00755 -1.4 -0.8 biofilm PGA synthesis protein PgaD compare
PS417_07620 -1.4 -1.9 beta-hexosaminidase compare
PS417_07615 -1.3 -5.1 TetR family transcriptional regulator compare
PS417_01855 -1.3 -2.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_01640 -1.3 -3.5 histidine kinase compare
PS417_22445 -1.3 -2.4 ATP-dependent DNA helicase RuvB compare
PS417_23810 -1.3 -8.1 acetolactate synthase 3 catalytic subunit compare
PS417_06205 -1.3 -6.8 methionine aminopeptidase compare
PS417_16400 -1.3 -2.0 NAD(P)H-quinone oxidoreductase compare
PS417_27515 -1.3 -3.2 heme biosynthesis protein HemY compare
PS417_04050 -1.3 -2.1 peptide ABC transporter ATP-binding protein compare
PS417_19710 -1.3 -8.1 flagellar biosynthesis protein FlhA compare
PS417_27520 -1.3 -3.1 uroporphyrin-III methyltransferase compare
PS417_23770 -1.3 -0.9 exodeoxyribonuclease V subunit alpha compare
PS417_19745 -1.3 -7.1 flagellar assembly protein FliO compare
PS417_21430 -1.3 -2.2 3-oxoacyl-ACP synthase compare
PS417_19725 -1.3 -3.4 flagellar biosynthesis protein FlhB compare
PS417_19795 -1.3 -6.3 flagellar assembly protein FliH compare
PS417_04390 -1.3 -1.9 toluene tolerance protein compare
PS417_19695 -1.3 -6.3 flagellar biosynthesis sigma factor compare
PS417_04290 -1.3 -3.4 hypothetical protein compare
PS417_19785 -1.3 -2.5 flagellar biogenesis protein compare
PS417_28070 -1.3 -7.6 phosphate ABC transporter ATP-binding protein compare
PS417_07140 -1.3 -3.3 peptidase M48 compare
PS417_04385 -1.3 -2.8 organic solvent ABC transporter substrate-binding protein compare
PS417_23390 -1.2 -4.0 ubiquinol oxidase subunit II compare
PS417_16005 -1.2 -2.8 ATPase compare
PS417_27425 -1.2 -5.8 exopolyphosphatase compare
PS417_19825 -1.2 -8.1 ATPase AAA compare
PS417_06245 -1.2 -1.1 zinc metallopeptidase RseP compare
PS417_01580 -1.2 -1.6 imidazole glycerol phosphate synthase compare
PS417_28265 -1.2 -1.7 pyridoxamine kinase compare
PS417_19830 -1.2 -4.2 flagellar assembly protein FliT compare
PS417_06200 -1.2 -3.5 protein-PII uridylyltransferase compare
PS417_02780 -1.2 -3.2 DNA-binding protein compare
PS417_19755 -1.2 -1.9 flagellar motor switch protein FliM compare
PS417_07640 -1.2 -2.9 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_22450 -1.2 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_23250 -1.2 -5.5 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_23385 -1.2 -6.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_16490 -1.2 -1.2 cell division protein FtsK compare
PS417_04380 -1.1 -0.8 ABC transporter permease compare
PS417_19730 -1.1 -3.3 flagellar biosynthesis protein FliR compare
PS417_05975 -1.1 -0.8 chemotaxis protein CheW compare
PS417_21585 -1.1 -4.9 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19955 -1.1 -1.8 hypothetical protein compare
PS417_26370 -1.1 -2.3 RNA helicase compare
PS417_02560 -1.1 -1.9 23S rRNA methyltransferase compare
PS417_08155 -1.0 -0.8 integration host factor subunit beta compare
PS417_23380 -1.0 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_27835 -1.0 -4.1 endoribonuclease compare
PS417_17240 -1.0 -2.9 trigger factor compare
PS417_20700 -1.0 -5.8 cbb3-type cytochrome c oxidase subunit I compare
PS417_18715 -1.0 -6.0 peptidase M4 compare
PS417_08770 -1.0 -2.5 hypothetical protein compare
PS417_07565 -1.0 -2.0 hypothetical protein compare
PS417_05535 -1.0 -1.5 Fis family transcriptional regulator compare
PS417_18760 -1.0 -2.9 hypothetical protein compare
PS417_19720 -1.0 -1.8 DNA-binding protein compare
PS417_15095 -1.0 -2.2 hypothetical protein compare
PS417_23805 -1.0 -2.8 acetolactate synthase 3 regulatory subunit compare
PS417_01795 -1.0 -6.8 glucosyltransferase MdoH compare
PS417_02280 -1.0 -0.8 GlcNAc-PI de-N-acetylase compare
PS417_05635 -1.0 -3.7 membrane protein compare
PS417_02510 -1.0 -2.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23160 -1.0 -2.0 50S rRNA methyltransferase compare
PS417_11400 -1.0 -1.4 phosphoglycerate mutase compare
PS417_26420 -0.9 -1.1 hypothetical protein compare
PS417_23915 -0.9 -3.7 pantoate--beta-alanine ligase compare
PS417_21125 -0.9 -3.6 phosphoadenosine phosphosulfate reductase compare
PS417_17215 -0.9 -1.8 peptidylprolyl isomerase compare
PS417_01560 -0.9 -1.5 imidazoleglycerol-phosphate dehydratase compare
PS417_00380 -0.9 -1.3 zinc ABC transporter ATP-binding protein compare
PS417_01635 -0.9 -3.4 nitrogen regulation protein NR(I) compare
PS417_08580 -0.9 -3.6 histidine kinase compare
PS417_00180 -0.9 -2.0 tryptophan synthase subunit alpha compare
PS417_23475 -0.9 -1.3 hypothetical protein compare
PS417_28080 -0.9 -6.4 phosphate ABC transporter permease compare
PS417_04475 -0.9 -3.0 hypothetical protein compare
PS417_14935 -0.9 -3.3 transposase compare
PS417_21480 -0.9 -0.8 23S rRNA pseudouridylate synthase compare
PS417_05885 -0.9 -4.3 potassium transporter Kup compare
PS417_16750 -0.9 -2.3 ABC transporter ATP-binding protein compare
PS417_08170 -0.9 -5.6 capsular biosynthesis protein compare
PS417_12310 -0.9 -4.1 methionine synthase compare
PS417_10870 -0.9 -1.9 GABA permease compare
PS417_26695 -0.9 -1.2 uracil phosphoribosyltransferase compare
PS417_27315 -0.9 -1.2 hypothetical protein compare
PS417_07170 -0.9 -2.6 hypothetical protein compare
PS417_14540 -0.9 -1.3 cytochrome C oxidase subunit III compare
PS417_02210 -0.9 -5.8 diguanylate cyclase compare
PS417_23910 -0.9 -4.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_28220 -0.9 -2.1 LysR family transcriptional regulator compare
PS417_01030 -0.9 -1.4 glutamine ABC transporter substrate-binding protein compare
PS417_08730 -0.9 -1.1 cytochrome C compare
PS417_27770 -0.9 -1.9 hypothetical protein compare
PS417_04275 -0.9 -5.9 hypothetical protein compare
PS417_18090 -0.9 -3.5 iron ABC transporter compare
PS417_10680 -0.8 -1.8 enoyl-CoA hydratase compare
PS417_07695 -0.8 -3.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_11755 -0.8 -2.8 diacetyl reductase compare
PS417_01620 -0.8 -1.7 preprotein translocase subunit SecB compare
PS417_19335 -0.8 -1.5 isochorismatase compare
PS417_02270 -0.8 -3.1 carbamoyltransferase compare
PS417_10335 -0.8 -1.3 peroxiredoxin compare
PS417_16680 -0.8 -1.2 MFS transporter compare
PS417_05815 -0.8 -2.6 recombinase RecA compare
PS417_12695 -0.8 -2.4 mannitol dehydrogenase compare
PS417_12585 -0.8 -4.0 acriflavine resistance protein B compare
PS417_17560 -0.8 -2.5 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
PS417_21560 -0.8 -2.6 flagellar basal body rod modification protein FlgD compare
PS417_18595 -0.8 -2.5 3-isopropylmalate dehydratase compare
PS417_01605 -0.8 -0.8 phosphoglycerate mutase compare
PS417_16990 -0.8 -4.2 acyl-CoA dehydrogenase compare
PS417_04435 -0.8 -5.2 uracil phosphoribosyltransferase compare
PS417_18600 -0.8 -1.8 isopropylmalate isomerase compare
PS417_03730 -0.8 -1.8 phosphate acetyltransferase compare
PS417_06530 -0.8 -1.3 membrane protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments

For motility_chemotaxis Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms