Experiment set18IT013 for Pseudomonas putida KT2440

Compare to:

Temperature shift 30_to_25

200 most important genes:

  gene name fitness t score description  
PP_0967 -7.3 -5.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -6.9 -4.8 Ornithine carbamoyltransferase compare
PP_5303 -6.6 -4.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0289 -6.5 -4.5 Imidazoleglycerol-phosphate dehydratase compare
PP_4679 -6.5 -4.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -6.5 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -6.4 -4.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1995 -6.3 -4.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4678 -6.1 -16.2 Ketol-acid reductoisomerase compare
PP_2371 -6.0 -4.2 Sulphite reductase hemoprotein, beta subunit compare
PP_0966 -6.0 -12.1 Histidinol dehydrogenase compare
PP_0965 -5.9 -12.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1986 -5.9 -3.5 3-isopropylmalate dehydratase small subunit compare
PP_2168 -5.8 -12.5 Transaldolase compare
PP_0082 -5.8 -4.0 tryptophan synthase alpha chain compare
PP_0184 -5.8 -4.0 Argininosuccinate lyase compare
PP_0292 -5.7 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5097 -5.7 -15.8 homoserine O-acetyltransferase compare
PP_1985 -5.6 -6.6 3-isopropylmalate dehydratase large subunit compare
PP_5289 -5.6 -3.8 Acetylglutamate kinase compare
PP_5015 -5.5 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0417 -5.5 -20.3 Anthranilate synthase component 1 compare
PP_2001 -5.4 -12.0 O-succinylhomoserine sulfhydrylase compare
PP_1088 -5.3 -11.3 Argininosuccinate synthase compare
PP_4680 -5.2 -15.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4782 -5.1 -6.5 Phosphomethylpyrimidine kinase compare
PP_1988 -5.1 -10.0 3-isopropylmalate dehydrogenase compare
PP_3511 -5.1 -8.3 Branched-chain-amino-acid aminotransferase compare
PP_5348 -5.0 -9.7 Transcriptional regulator, LysR family compare
PP_0422 -5.0 -5.5 Indole-3-glycerol phosphate synthase compare
PP_5098 -5.0 -8.8 methionine biosynthesis protein MetW compare
PP_5128 -4.9 -8.7 Dihydroxy-acid dehydratase compare
PP_5014 -4.8 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0420 -4.7 -9.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0421 -4.7 -8.5 Anthranilate phosphoribosyltransferase compare
PP_2327 -4.7 -7.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0377 -4.7 -1.9 coenzyme PQQ synthesis protein D compare
PP_5346 -4.6 -9.6 pyruvate carboxylase subunit B compare
PP_0593 -4.6 -1.3 putative ribosome-binding factor compare
PP_5347 -4.6 -12.8 pyruvate carboxylase subunit A compare
PP_0735 -4.4 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_5185 -4.4 -6.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4890 -4.3 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_3999 -4.2 -5.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0083 -4.2 -9.0 tryptophan synthase beta chain compare
PP_4696 -4.1 -6.3 Nitrogen regulation protein NR(I) compare
PP_5104 -4.1 -6.8 thiazole synthase compare
PP_4902 -4.1 -2.8 Oligoribonuclease compare
PP_0362 -4.1 -9.8 Biotin synthase compare
PP_4909 -4.0 -8.4 phosphoserine phosphatase compare
PP_3946 -4.0 -1.6 HTH-type transcriptional repressor NicR compare
PP_4828 -3.9 -1.5 Precorrin-8X methylmutase compare
PP_1233 -3.9 -5.1 sulfurtransferase compare
PP_0846 -3.9 -1.8 DnaK-like molecular chaperone specific for IscU compare
PP_4122 -3.8 -2.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0366 -3.7 -5.0 dethiobiotin synthetase compare
PP_4340 -3.6 -3.4 response regulator for chemotactic signal transduction compare
PP_0022 -3.4 -1.4 hypothetical protein compare
PP_5155 -3.4 -4.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1231 -3.3 -5.0 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3417 -3.2 -4.2 D-gluconate transporter compare
PP_4984 -3.2 -7.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1025 -3.2 -8.2 2-isopropylmalate synthase compare
PP_0364 -3.1 -5.3 pimeloyl-[acp] methyl ester esterase compare
PP_1912 -2.7 -6.3 Phosphate acyltransferase compare
PP_0363 -2.7 -7.2 8-amino-7-oxononanoate synthase compare
PP_4922 -2.7 -8.6 Phosphomethylpyrimidine synthase compare
PP_5217 -2.6 -8.1 Polyphosphate kinase compare
PP_4824 -2.5 -8.1 Sensor histidine kinase/response regulator compare
PP_4561 -2.5 -1.2 stress response protein compare
PP_2328 -2.5 -6.6 Phosphoadenosine phosphosulfate reductase compare
PP_4804 -2.4 -3.1 RlpA-like lipoprotein compare
PP_1654 -2.4 -3.8 cysteine synthase B compare
PP_1676 -2.4 -4.6 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0365 -2.3 -5.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4700 -2.3 -1.6 pantothenate synthetase compare
PP_1348 -2.3 -3.9 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0653 -2.3 -1.6 conserved protein of unknown function compare
PP_5095 -2.3 -1.2 pyrroline-5-carboxylate reductase compare
PP_5274 -2.2 -2.1 conserved protein of unknown function compare
PP_1362 -2.1 -3.5 pyruvate kinase II compare
PP_1664 -2.1 -2.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_4392 -2.1 -4.4 chemotaxis protein methyltransferase compare
PP_1022 -2.1 -3.7 glucose 6-phosphate-1-dehydrogenase compare
PP_4785 -2.0 -4.1 conserved exported protein of unknown function compare
PP_4273 -2.0 -1.7 Transcriptional regulator, MerR family compare
PP_1237 -2.0 -1.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2370 -2.0 -2.5 conserved protein of unknown function compare
PP_3312 -2.0 -1.8 putative Heat shock protein compare
PP_3508 -1.9 -3.0 Protein CobW compare
PP_2378 -1.9 -2.6 Fe/S biogenesis protein NfuA compare
PP_1872 -1.9 -6.1 glutamate-pyruvate aminotransferase compare
PP_0393 -1.8 -1.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1678 -1.8 -2.1 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4977 -1.8 -6.9 5,10-methylenetetrahydrofolate reductase compare
PP_4701 -1.8 -1.1 glucose-6-phosphate isomerase compare
PP_2375 -1.7 -8.0 cobalamin-dependent methionine synthase compare
PP_0787 -1.7 -1.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5621 -1.7 -2.2 protein of unknown function compare
PP_3884 -1.7 -1.8 Phage holin, lambda family compare
PP_3384 -1.7 -3.7 gluconate 2-dehydrogenase gamma subunit compare
PP_1677 -1.7 -3.4 Adenosyl-cobyric acid synthase compare
PP_3098 -1.7 -1.1 conserved protein of unknown function compare
PP_4829 -1.6 -2.4 putative precorrin-3B synthase compare
PP_1001 -1.6 -2.5 arginine deiminase compare
PP_0065 -1.6 -2.6 NAD-binding component of TrK potassium transporter compare
PP_5216 -1.6 -1.1 exopolyphosphatase compare
PP_4262 -1.6 -2.3 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2307 -1.6 -1.9 conserved protein of unknown function compare
PP_1426 -1.5 -6.5 L-aspartate oxidase compare
PP_4941 -1.5 -4.3 conserved exported protein of unknown function compare
PP_0291 -1.5 -1.4 conserved protein of unknown function compare
PP_1862 -1.5 -2.4 conserved membrane protein of unknown function compare
PP_1679 -1.5 -2.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3880 -1.5 -1.5 conserved exported protein of unknown function compare
PP_1734 -1.5 -3.0 Probable septum site-determining protein MinC compare
PP_5035 -1.5 -4.7 Histidine utilization repressor compare
PP_2388 -1.5 -2.5 Transporter, LysE family compare
PP_4695 -1.5 -6.0 Sensory box histidine kinase compare
PP_1322 -1.5 -1.7 putative Lipoprotein compare
PP_5203 -1.4 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_1553 -1.4 -1.6 conserved protein of unknown function compare
PP_5393 -1.4 -1.3 putative metal-binding chaperone compare
PP_t10 -1.4 -1.3 tRNA-Pro compare
PP_2668 -1.4 -2.0 ABC efflux transporter, ATP-binding protein compare
PP_5639 -1.4 -4.5 conserved exported protein of unknown function compare
PP_0833 -1.4 -0.9 queuine tRNA-ribosyltransferase compare
PP_1672 -1.4 -3.0 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4964 -1.4 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_4379 -1.4 -2.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3506 -1.4 -1.4 Magnesium chelatase, subunit ChII compare
PP_4832 -1.4 -2.0 Precorrin-6x reductase compare
PP_5093 -1.4 -1.2 twitching motility protein compare
PP_4938 -1.4 -5.7 putative Glycosyl transferase compare
PP_1673 -1.4 -3.4 cobyrinate a,c-diamide synthase compare
PP_4699 -1.4 -2.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4338 -1.4 -4.4 Chemotaxis histidine kinase CheA compare
PP_2497 -1.3 -1.1 conserved protein of unknown function compare
PP_1878 -1.3 -3.7 conserved protein of unknown function conserved
PP_0888 -1.3 -1.7 Photosynthetic apparatus regulatory protein RegA compare
PP_1304 -1.3 -4.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4917 -1.3 -2.2 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_3790 -1.3 -4.6 diaminopimelate epimerase compare
PP_1142 -1.3 -0.9 conserved protein of unknown function compare
PP_4693 -1.2 -3.1 RNA polymerase-binding transcription factor DksA compare
PP_4045 -1.2 -2.2 conserved protein of unknown function compare
PP_1011 -1.2 -3.9 glucokinase compare
PP_4503 -1.2 -1.0 DNA-binding response regulator compare
PP_1099 -1.2 -2.2 Cold shock protein CapB compare
PP_4874 -1.2 -1.0 50S ribosomal protein L9 compare
PP_5640 -1.2 -1.6 conserved protein of unknown function compare
PP_1017 -1.2 -3.4 mannose/glucose ABC transporter, permease protein compare
PP_1559 -1.2 -2.3 Holin compare
PP_4069 -1.2 -2.5 conserved protein of unknown function compare
PP_4936 -1.2 -4.0 O-antigen polymerase compare
PP_0872 -1.2 -4.2 Peptide chain release factor 3 compare
PP_5350 -1.2 -1.6 Transcriptional regulator, RpiR family compare
PP_1198 -1.2 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0962 -1.2 -1.1 toluene-tolerance protein compare
PP_1269 -1.2 -1.0 Universal stress protein family compare
PP_0757 -1.1 -1.7 conserved protein of unknown function compare
PP_5583 -1.1 -1.8 conserved protein of unknown function compare
PP_4159 -1.1 -1.9 Potassium-transporting ATPase C chain compare
PP_3449 -1.1 -1.7 conserved exported protein of unknown function compare
PP_3164 -1.1 -2.1 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_2972 -1.1 -1.3 conserved protein of unknown function compare
PP_4480 -1.1 -4.0 arginine N-succinyltransferase, subunit alpha compare
PP_1836 -1.1 -2.1 putative metal transporter, ZIP family compare
PP_4254 -1.1 -1.6 conserved protein of unknown function compare
PP_2253 -1.1 -0.8 Transcriptional regulator, GntR family compare
PP_0246 -1.1 -1.5 two-component system DNA-binding response transcriptional dual regulator compare
PP_0781 -1.1 -2.1 conserved protein of unknown function compare
PP_1675 -1.0 -3.6 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4271 -1.0 -0.8 conserved protein of unknown function compare
PP_0502 -1.0 -1.9 conserved protein of unknown function compare
PP_3824 -1.0 -1.7 conserved exported protein of unknown function compare
PP_1621 -1.0 -3.0 Protein-L-isoaspartate O-methyltransferase compare
PP_0138 -1.0 -5.2 conserved membrane protein of unknown function compare
PP_2750 -1.0 -1.8 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_0760 -1.0 -2.4 conserved membrane protein of unknown function compare
PP_3507 -1.0 -5.2 Aerobic cobaltochelatase subunit CobN compare
PP_0086 -1.0 -1.3 conserved protein of unknown function compare
PP_2737 -1.0 -1.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5701 -1.0 -1.3 conserved protein of unknown function compare
PP_0855 -1.0 -1.7 conserved protein of unknown function compare
PP_5028 -1.0 -2.0 proline iminopeptidase compare
PP_5426 -1.0 -3.1 conserved protein of unknown function compare
PP_1013 -1.0 -3.4 Sensor histidine kinase compare
PP_0848 -1.0 -1.6 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_5SB -1.0 -2.2 5S ribosomal RNA compare
PP_2203 -1.0 -1.0 conserved protein of unknown function compare
PP_5225 -1.0 -1.0 frataxin compare
PP_3307 -1.0 -1.2 conserved protein of unknown function compare
PP_1122 -1.0 -1.2 OmpA family protein compare
PP_1681 -1.0 -4.2 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_4168 -1.0 -2.2 conserved protein of unknown function compare
PP_3102 -1.0 -2.4 conserved protein of unknown function compare
PP_2302 -0.9 -2.5 DNA-binding, ATP-dependent protease compare
PP_5507 -0.9 -1.6 protein of unknown function compare
PP_3649 -0.9 -2.1 Transcriptional regulator, GntR family compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in temperature shift experiments

For temperature shift D-Glucose across organisms