Experiment set18IT009 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_23545 -5.4 -3.6 gamma-glutamyl kinase compare
PS417_27795 -3.6 -1.2 orotate phosphoribosyltransferase compare
PS417_18310 -3.5 -1.9 hypothetical protein compare
PS417_16555 -3.4 -2.7 cupin compare
PS417_24745 -3.1 -4.2 gamma-glutamyl phosphate reductase compare
PS417_06680 -2.6 -8.4 nuclease PIN compare
PS417_08135 -2.4 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21480 -2.3 -2.1 23S rRNA pseudouridylate synthase compare
PS417_27865 -2.3 -3.4 LysR family transcriptional regulator compare
PS417_05815 -2.2 -3.4 recombinase RecA compare
PS417_19955 -2.2 -2.8 hypothetical protein compare
PS417_20855 -2.2 -1.8 hypothetical protein compare
PS417_23950 -2.1 -2.3 polynucleotide phosphorylase/polyadenylase compare
PS417_23375 -2.0 -2.4 cytochrome C oxidase compare
PS417_04365 -2.0 -1.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_20985 -1.9 -1.3 porin compare
PS417_06375 -1.9 -1.1 deoxycytidine triphosphate deaminase compare
PS417_27800 -1.9 -1.3 exodeoxyribonuclease III compare
PS417_09470 -1.8 -1.4 hypothetical protein compare
PS417_07140 -1.7 -3.1 peptidase M48 compare
PS417_23025 -1.7 -6.2 murein transglycosylase compare
PS417_01560 -1.7 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_06200 -1.7 -5.5 protein-PII uridylyltransferase compare
PS417_27870 -1.7 -3.0 ATP-dependent DNA helicase RecG compare
PS417_01850 -1.6 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00180 -1.6 -3.2 tryptophan synthase subunit alpha compare
PS417_08125 -1.6 -0.8 prephenate dehydratase compare
PS417_02485 -1.6 -3.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_17215 -1.6 -2.9 peptidylprolyl isomerase compare
PS417_12805 -1.5 -9.8 glycogen branching protein compare
PS417_00185 -1.5 -3.7 tryptophan synthase subunit beta compare
PS417_20785 -1.5 -3.1 transcriptional regulator compare
PS417_19350 -1.5 -3.7 GTP cyclohydrolase compare
PS417_23810 -1.5 -8.5 acetolactate synthase 3 catalytic subunit compare
PS417_12855 -1.4 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_14065 -1.4 -7.1 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_22445 -1.4 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_22570 -1.4 -1.0 H-NS histone compare
PS417_26730 -1.4 -0.6 pyrroline-5-carboxylate reductase compare
PS417_07470 -1.4 -1.2 hypothetical protein compare
PS417_01565 -1.3 -4.9 imidazole glycerol phosphate synthase compare
PS417_26985 -1.3 -3.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08155 -1.3 -1.1 integration host factor subunit beta compare
PS417_27040 -1.3 -2.5 3-phosphoglycerate dehydrogenase compare
PS417_21630 -1.3 -1.7 magnesium transporter compare
PS417_23805 -1.3 -4.5 acetolactate synthase 3 regulatory subunit compare
PS417_23915 -1.3 -3.7 pantoate--beta-alanine ligase compare
PS417_02555 -1.2 -7.7 exoribonuclease R compare
PS417_16005 -1.2 -2.7 ATPase compare
PS417_08685 -1.2 -1.7 flagellar hook-length control protein FliK compare
PS417_27135 -1.2 -0.7 glutamine synthetase compare
PS417_07640 -1.2 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23775 -1.2 -1.2 exodeoxyribonuclease V subunit beta compare
PS417_05695 -1.1 -4.1 transcriptional regulator compare
PS417_04290 -1.1 -3.1 hypothetical protein compare
PS417_15085 -1.1 -3.4 ATPase AAA compare
PS417_10405 -1.1 -1.3 filamentous hemagglutinin compare
PS417_13205 -1.1 -1.7 isochorismate-pyruvate lyase compare
PS417_23380 -1.1 -1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_04410 -1.0 -1.7 hypothetical protein compare
PS417_23390 -1.0 -4.6 ubiquinol oxidase subunit II compare
PS417_07170 -1.0 -3.9 hypothetical protein compare
PS417_20880 -1.0 -1.7 GntR family transcriptional regulator compare
PS417_27100 -1.0 -2.8 phosphohydrolase compare
PS417_01425 -1.0 -2.5 AraC family transcriptional regulator compare
PS417_22565 -1.0 -0.7 formyltetrahydrofolate deformylase compare
PS417_22990 -1.0 -0.6 iron dicitrate transport regulator FecR compare
PS417_02415 -1.0 -3.3 phosphoserine phosphatase compare
PS417_26175 -1.0 -0.8 sarcosine oxidase subunit gamma compare
PS417_04380 -1.0 -0.7 ABC transporter permease compare
PS417_11925 -1.0 -2.3 hypothetical protein compare
PS417_00405 -1.0 -4.3 DNA polymerase I compare
PS417_01855 -1.0 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_21430 -1.0 -1.4 3-oxoacyl-ACP synthase compare
PS417_18445 -1.0 -2.3 glycerol-3-phosphatase compare
PS417_23910 -1.0 -4.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_12310 -1.0 -5.6 methionine synthase compare
PS417_19655 -1.0 -4.6 chemotaxis protein CheW compare
PS417_13510 -1.0 -1.0 polyketide cyclase compare
PS417_18780 -0.9 -1.6 flavin reductase compare
PS417_00045 -0.9 -1.4 glycerol acyltransferase compare
PS417_04055 -0.9 -3.9 peptide transporter compare
PS417_19335 -0.9 -2.2 isochorismatase compare
PS417_04385 -0.9 -2.3 organic solvent ABC transporter substrate-binding protein compare
PS417_06205 -0.9 -5.0 methionine aminopeptidase compare
PS417_08540 -0.9 -1.9 RNA helicase compare
PS417_19675 -0.9 -2.6 chemotaxis protein CheY compare
PS417_04050 -0.9 -1.8 peptide ABC transporter ATP-binding protein compare
PS417_03100 -0.9 -1.0 pilus assembly protein compare
PS417_00380 -0.9 -2.2 zinc ABC transporter ATP-binding protein compare
PS417_01590 -0.9 -1.8 polysaccharide deacetylase compare
PS417_17240 -0.9 -2.1 trigger factor compare
PS417_03560 -0.9 -0.9 GTP-binding protein compare
PS417_04315 -0.9 -2.4 superoxide dismutase compare
PS417_27105 -0.9 -2.6 spermidine/putrescine ABC transporter permease compare
PS417_07710 -0.9 -3.3 membrane protein compare
PS417_09150 -0.9 -2.0 energy transducer TonB compare
PS417_05025 -0.9 -1.7 maleylacetoacetate isomerase compare
PS417_20185 -0.9 -2.8 ketosteroid isomerase compare
PS417_09210 -0.9 -1.2 TetR family transcriptional regulator compare
PS417_07940 -0.9 -1.9 hypothetical protein compare
PS417_04390 -0.9 -2.1 toluene tolerance protein compare
PS417_27515 -0.9 -2.7 heme biosynthesis protein HemY compare
PS417_27615 -0.9 -4.6 ammonia channel protein compare
PS417_15105 -0.9 -3.1 membrane protein compare
PS417_22875 -0.8 -1.5 hypothetical protein compare
PS417_08580 -0.8 -3.7 histidine kinase compare
PS417_23385 -0.8 -4.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_17830 -0.8 -2.0 4-hydroxyphenylacetate isomerase compare
PS417_23250 -0.8 -3.8 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_15890 -0.8 -2.0 RNA polymerase sigma factor compare
PS417_04435 -0.8 -5.3 uracil phosphoribosyltransferase compare
PS417_08410 -0.8 -1.7 hypothetical protein compare
PS417_10010 -0.8 -1.6 Replication protein P compare
PS417_05830 -0.8 -2.2 hypothetical protein compare
PS417_16195 -0.8 -1.0 AraC family transcriptional regulator compare
PS417_27155 -0.8 -1.3 aliphatic sulfonates transport ATP-binding subunit compare
PS417_27835 -0.8 -2.7 endoribonuclease compare
PS417_24710 -0.8 -4.2 lipoprotein compare
PS417_01580 -0.8 -1.2 imidazole glycerol phosphate synthase compare
PS417_15110 -0.8 -3.4 protein BatD compare
PS417_06745 -0.8 -1.4 polysaccharide deacetylase compare
PS417_24800 -0.8 -2.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_18590 -0.8 -2.5 SAM-dependent methyltransferase compare
PS417_27425 -0.8 -3.6 exopolyphosphatase compare
PS417_24525 -0.8 -1.4 nuclease compare
PS417_26370 -0.8 -1.8 RNA helicase compare
PS417_20700 -0.8 -3.9 cbb3-type cytochrome c oxidase subunit I compare
PS417_24705 -0.8 -1.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_04595 -0.8 -1.5 cell division protein MraZ compare
PS417_19665 -0.8 -2.8 flagellar motor protein MotD compare
PS417_02975 -0.8 -1.9 3-dehydroquinate dehydratase compare
PS417_22150 -0.8 -2.7 D-mannose isomerase (EC 5.3.1.7) (from data) compare
PS417_00085 -0.8 -1.6 16S rRNA methyltransferase compare
PS417_14075 -0.8 -1.4 hypothetical protein compare
PS417_18710 -0.8 -3.8 hypothetical protein compare
PS417_04440 -0.8 -1.3 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_27245 -0.7 -1.9 aminotransferase DegT compare
PS417_02760 -0.7 -2.6 AraC family transcriptional regulator compare
PS417_09245 -0.7 -1.1 recombinase RdgC compare
PS417_12200 -0.7 -2.4 microcin ABC transporter permease compare
PS417_27300 -0.7 -0.6 cell division protein ZapA compare
PS417_02560 -0.7 -1.0 23S rRNA methyltransferase compare
PS417_24585 -0.7 -4.8 AMP nucleosidase compare
PS417_17805 -0.7 -1.3 microcin B17 processing protein McbC compare
PS417_22210 -0.7 -1.2 AraC family transcriptional regulator compare
PS417_20160 -0.7 -3.2 cysteine synthase compare
PS417_15095 -0.7 -1.7 hypothetical protein compare
PS417_25710 -0.7 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_15540 -0.7 -1.0 NUDIX hydrolase compare
PS417_04535 -0.7 -1.5 lysine transporter LysE compare
PS417_19605 -0.7 -1.0 hypothetical protein compare
PS417_17035 -0.7 -0.9 Cro/Cl family transcriptional regulator compare
PS417_22270 -0.7 -2.5 hypothetical protein compare
PS417_27490 -0.7 -1.1 hypothetical protein compare
PS417_20265 -0.7 -3.5 transcriptional regulator compare
PS417_00375 -0.7 -1.7 membrane protein compare
PS417_02740 -0.7 -1.8 LysR family transcriptional regulator compare
PS417_02055 -0.7 -1.9 methyltransferase compare
PS417_15030 -0.7 -0.9 short-chain dehydrogenase compare
PS417_01640 -0.7 -2.9 histidine kinase compare
PS417_24500 -0.7 -1.0 DEAD/DEAH box helicase compare
PS417_27195 -0.7 -0.8 N-acetylglutamate synthase compare
PS417_19650 -0.7 -3.0 chemotaxis protein CheW compare
PS417_15505 -0.7 -2.5 glutaminase compare
PS417_22450 -0.7 -0.8 ATP-dependent DNA helicase RuvA compare
PS417_28070 -0.7 -4.2 phosphate ABC transporter ATP-binding protein compare
PS417_22260 -0.7 -2.0 segregation and condensation protein B compare
PS417_17455 -0.7 -2.5 cytochrome C compare
PS417_08025 -0.7 -0.8 acetylornithine aminotransferase compare
PS417_26655 -0.7 -2.1 chemotaxis protein compare
PS417_22810 -0.7 -1.0 DNA base-flipping protein YbaZ compare
PS417_08545 -0.7 -1.4 aromatic ring-opening dioxygenase LigB compare
PS417_18235 -0.7 -2.0 nitrile hydratase compare
PS417_12935 -0.7 -2.2 RNA polymerase sigma factor compare
PS417_02005 -0.7 -4.3 glutamate synthase compare
PS417_18105 -0.7 -0.8 iron-dicitrate transporter substrate-binding subunit compare
PS417_19450 -0.7 -3.4 Patatin compare
PS417_10045 -0.7 -2.3 hypothetical protein compare
PS417_26835 -0.7 -1.7 3-mercaptopyruvate sulfurtransferase compare
PS417_21655 -0.7 -0.4 aspartate kinase compare
PS417_05010 -0.7 -0.9 IclR family transcriptional regulator compare
PS417_19835 -0.7 -1.2 flagellar biosynthesis protein FliS compare
PS417_06025 -0.7 -1.4 alpha/beta hydrolase compare
PS417_02000 -0.7 -4.0 glutamate synthase compare
PS417_18055 -0.7 -0.8 general secretion pathway protein GspK compare
PS417_21035 -0.7 -3.3 multidrug transporter compare
PS417_07950 -0.7 -2.0 MFS transporter compare
PS417_27035 -0.7 -1.8 FAD-linked oxidase compare
PS417_18545 -0.7 -2.0 cell division protein compare
PS417_12660 -0.7 -1.2 hypothetical protein compare
PS417_20840 -0.7 -2.9 hypothetical protein compare
PS417_28350 -0.6 -2.4 fatty acid methyltransferase compare
PS417_13620 -0.6 -0.7 thermostable hemolysin compare
PS417_24575 -0.6 -0.9 hypothetical protein compare
PS417_11825 -0.6 -0.9 transcriptional regulator compare
PS417_28265 -0.6 -1.6 pyridoxamine kinase compare
PS417_07560 -0.6 -0.9 universal stress protein UspA compare
PS417_22315 -0.6 -2.2 DNA-3-methyladenine glycosylase compare
PS417_07985 -0.6 -1.0 AbrB family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in motility_chemotaxis experiments

For motility_chemotaxis Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms