Experiment set18IT007 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_13510 -5.5 -1.7 polyketide cyclase compare
PS417_27870 -4.7 -5.6 ATP-dependent DNA helicase RecG compare
PS417_19835 -4.5 -1.9 flagellar biosynthesis protein FliS compare
PS417_06375 -4.4 -1.3 deoxycytidine triphosphate deaminase compare
PS417_22450 -4.0 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_22565 -3.9 -1.2 formyltetrahydrofolate deformylase compare
PS417_27795 -3.7 -1.1 orotate phosphoribosyltransferase compare
PS417_19675 -3.5 -6.9 chemotaxis protein CheY compare
PS417_08125 -3.4 -1.0 prephenate dehydratase compare
PS417_08685 -3.0 -2.2 flagellar hook-length control protein FliK compare
PS417_20785 -2.9 -3.9 transcriptional regulator compare
PS417_22445 -2.9 -4.1 ATP-dependent DNA helicase RuvB compare
PS417_19850 -2.9 -11.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_01560 -2.8 -3.4 imidazoleglycerol-phosphate dehydratase compare
PS417_19740 -2.8 -4.9 flagellar biosynthesis protein flip compare
PS417_24745 -2.7 -4.5 gamma-glutamyl phosphate reductase compare
PS417_01580 -2.7 -2.0 imidazole glycerol phosphate synthase compare
PS417_19860 -2.6 -15.3 flagellar hook protein FlgL compare
PS417_19840 -2.5 -8.8 flagellar cap protein FliD compare
PS417_26985 -2.4 -4.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_22990 -2.4 -1.9 iron dicitrate transport regulator FecR compare
PS417_19665 -2.4 -5.2 flagellar motor protein MotD compare
PS417_14065 -2.4 -7.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_19725 -2.4 -8.1 flagellar biosynthesis protein FlhB compare
PS417_01920 -2.4 -0.9 ATP-dependent protease subunit HslV compare
PS417_19735 -2.3 -6.5 flagellar biosynthesis protein FliQ compare
PS417_21585 -2.3 -10.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19865 -2.3 -10.9 flagellar hook protein FlgK compare
PS417_19880 -2.3 -9.8 flagellar basal body L-ring protein compare
PS417_19795 -2.3 -12.1 flagellar assembly protein FliH compare
PS417_19710 -2.2 -11.4 flagellar biosynthesis protein FlhA compare
PS417_01565 -2.2 -7.3 imidazole glycerol phosphate synthase compare
PS417_19650 -2.2 -6.0 chemotaxis protein CheW compare
PS417_19955 -2.2 -2.6 hypothetical protein compare
PS417_24705 -2.2 -2.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_22375 -2.2 -1.1 cold-shock protein compare
PS417_12855 -2.2 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_12805 -2.2 -10.0 glycogen branching protein compare
PS417_19790 -2.2 -3.1 ATP synthase compare
PS417_17215 -2.2 -2.5 peptidylprolyl isomerase compare
PS417_21570 -2.1 -4.1 flagellar basal body rod protein FlgB compare
PS417_27865 -2.1 -2.7 LysR family transcriptional regulator compare
PS417_19800 -2.1 -3.7 flagellar motor switch protein FliG compare
PS417_19695 -2.1 -7.5 flagellar biosynthesis sigma factor compare
PS417_01605 -2.1 -1.2 phosphoglycerate mutase compare
PS417_06245 -2.1 -1.5 zinc metallopeptidase RseP compare
PS417_04650 -2.1 -0.8 D-alanine--D-alanine ligase compare
PS417_20755 -2.1 -4.6 membrane protein compare
PS417_20985 -2.0 -1.4 porin compare
PS417_21575 -2.0 -5.7 chemotaxis protein compare
PS417_19765 -2.0 -7.4 flagellar hook-length control protein compare
PS417_21630 -2.0 -2.3 magnesium transporter compare
PS417_19730 -2.0 -2.7 flagellar biosynthesis protein FliR compare
PS417_19745 -2.0 -5.8 flagellar assembly protein FliO compare
PS417_16490 -2.0 -1.9 cell division protein FtsK compare
PS417_19825 -1.9 -10.2 ATPase AAA compare
PS417_02005 -1.9 -9.7 glutamate synthase compare
PS417_19785 -1.9 -4.9 flagellar biogenesis protein compare
PS417_21555 -1.9 -8.8 flagellar hook protein FlgE compare
PS417_06680 -1.8 -6.2 nuclease PIN compare
PS417_19655 -1.8 -3.9 chemotaxis protein CheW compare
PS417_19885 -1.8 -3.4 flagellar basal body rod protein FlgG compare
PS417_27300 -1.8 -1.0 cell division protein ZapA compare
PS417_10405 -1.8 -1.6 filamentous hemagglutinin compare
PS417_21595 -1.8 -3.7 flagellar biosynthesis protein FlgN compare
PS417_01575 -1.7 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_03455 -1.7 -1.9 type III secretion protein compare
PS417_23025 -1.7 -5.6 murein transglycosylase compare
PS417_27195 -1.7 -1.1 N-acetylglutamate synthase compare
PS417_21565 -1.7 -4.7 flagellar basal body rod protein FlgC compare
PS417_04475 -1.7 -4.1 hypothetical protein compare
PS417_19705 -1.7 -3.3 flagellar biosynthesis regulator FlhF compare
PS417_26990 -1.7 -1.0 RNA pyrophosphohydrolase compare
PS417_04380 -1.6 -1.0 ABC transporter permease compare
PS417_23810 -1.6 -7.0 acetolactate synthase 3 catalytic subunit compare
PS417_01850 -1.6 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23545 -1.6 -1.5 gamma-glutamyl kinase compare
PS417_19805 -1.6 -4.7 flagellar M-ring protein FliF compare
PS417_16555 -1.6 -2.1 cupin compare
PS417_04365 -1.6 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04415 -1.6 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02000 -1.6 -9.7 glutamate synthase compare
PS417_27800 -1.6 -2.1 exodeoxyribonuclease III compare
PS417_08090 -1.6 -0.9 3-oxoacyl-ACP reductase compare
PS417_23915 -1.5 -3.3 pantoate--beta-alanine ligase compare
PS417_24615 -1.5 -1.4 hypothetical protein compare
PS417_02415 -1.5 -3.3 phosphoserine phosphatase compare
PS417_19660 -1.5 -4.9 cobalamin biosynthesis protein CobQ compare
PS417_00370 -1.5 -1.0 hypothetical protein compare
PS417_23995 -1.5 -0.9 preprotein translocase subunit SecG compare
PS417_27040 -1.5 -3.3 3-phosphoglycerate dehydrogenase compare
PS417_18600 -1.5 -3.7 isopropylmalate isomerase compare
PS417_01915 -1.4 -0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_06730 -1.4 -1.5 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_01640 -1.4 -3.2 histidine kinase compare
PS417_06200 -1.4 -4.1 protein-PII uridylyltransferase compare
PS417_02720 -1.4 -0.9 TetR family transcriptional regulator compare
PS417_09470 -1.4 -1.3 hypothetical protein compare
PS417_19755 -1.4 -1.9 flagellar motor switch protein FliM compare
PS417_25710 -1.4 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_24710 -1.4 -6.4 lipoprotein compare
PS417_08135 -1.4 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18545 -1.4 -2.9 cell division protein compare
PS417_02980 -1.3 -1.3 chemotaxis protein compare
PS417_06540 -1.3 -1.7 membrane protein compare
PS417_01855 -1.3 -1.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_23805 -1.3 -3.7 acetolactate synthase 3 regulatory subunit compare
PS417_02880 -1.3 -1.0 copper chaperone compare
PS417_19690 -1.3 -5.7 histidine kinase compare
PS417_04290 -1.3 -3.3 hypothetical protein compare
PS417_21035 -1.3 -6.0 multidrug transporter compare
PS417_07710 -1.3 -3.6 membrane protein compare
PS417_07140 -1.3 -4.0 peptidase M48 compare
PS417_15495 -1.3 -1.2 FAD-dependent oxidoreductase compare
PS417_26370 -1.3 -3.6 RNA helicase compare
PS417_18560 -1.3 -5.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_15085 -1.3 -3.1 ATPase AAA compare
PS417_02555 -1.3 -7.7 exoribonuclease R compare
PS417_04385 -1.3 -2.8 organic solvent ABC transporter substrate-binding protein compare
PS417_25720 -1.3 -4.8 anthranilate synthase component II compare
PS417_06205 -1.3 -6.4 methionine aminopeptidase compare
PS417_26890 -1.3 -5.3 dihydroxy-acid dehydratase compare
PS417_20705 -1.3 -2.7 cbb3-type cytochrome c oxidase subunit II compare
PS417_21430 -1.3 -1.6 3-oxoacyl-ACP synthase compare
PS417_23825 -1.2 -4.5 penicillin-binding protein compare
PS417_27835 -1.2 -3.6 endoribonuclease compare
PS417_00180 -1.2 -1.8 tryptophan synthase subunit alpha compare
PS417_00825 -1.2 -2.1 recombinase RecF compare
PS417_27615 -1.2 -5.6 ammonia channel protein compare
PS417_03260 -1.2 -1.1 5S ribosomal RNA compare
PS417_18595 -1.2 -2.6 3-isopropylmalate dehydratase compare
PS417_02510 -1.2 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_17830 -1.2 -1.7 4-hydroxyphenylacetate isomerase compare
PS417_07700 -1.2 -2.3 chromosome partitioning protein ParA compare
PS417_07615 -1.2 -4.7 TetR family transcriptional regulator compare
PS417_20160 -1.2 -2.8 cysteine synthase compare
PS417_01795 -1.2 -7.2 glucosyltransferase MdoH compare
PS417_03165 -1.2 -3.6 hypothetical protein compare
PS417_16005 -1.2 -2.3 ATPase compare
PS417_03465 -1.1 -1.5 type III secretion protein compare
PS417_23950 -1.1 -1.5 polynucleotide phosphorylase/polyadenylase compare
PS417_23800 -1.1 -6.2 ketol-acid reductoisomerase compare
PS417_24460 -1.1 -2.4 hypothetical protein compare
PS417_04420 -1.1 -4.9 histidinol dehydrogenase compare
PS417_21480 -1.1 -1.0 23S rRNA pseudouridylate synthase compare
PS417_27110 -1.1 -2.8 spermidine/putrescine ABC transporter permease compare
PS417_19830 -1.1 -3.7 flagellar assembly protein FliT compare
PS417_15095 -1.1 -2.2 hypothetical protein compare
PS417_15975 -1.1 -1.6 glutamate carboxypeptidase compare
PS417_01635 -1.1 -6.8 nitrogen regulation protein NR(I) compare
PS417_21560 -1.1 -2.9 flagellar basal body rod modification protein FlgD compare
PS417_02485 -1.1 -3.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_05790 -1.1 -3.0 hypothetical protein compare
PS417_28070 -1.1 -5.1 phosphate ABC transporter ATP-binding protein compare
PS417_26660 -1.1 -2.5 protein PilI compare
PS417_23390 -1.1 -3.6 ubiquinol oxidase subunit II compare
PS417_27990 -1.1 -2.2 hypothetical protein compare
PS417_28450 -1.1 -1.6 XRE family transcriptional regulator compare
PS417_25725 -1.1 -6.7 anthranilate synthase component I compare
PS417_27425 -1.1 -4.6 exopolyphosphatase compare
PS417_08410 -1.1 -2.2 hypothetical protein compare
PS417_13800 -1.0 -2.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_17565 -1.0 -1.3 branched-chain amino acid aminotransferase compare
PS417_00195 -1.0 -1.3 hypothetical protein compare
PS417_18585 -1.0 -3.7 3-isopropylmalate dehydrogenase compare
PS417_23375 -1.0 -1.6 cytochrome C oxidase compare
PS417_19870 -1.0 -1.8 flagellar rod assembly protein FlgJ compare
PS417_25175 -1.0 -2.1 hypothetical protein compare
PS417_23370 -1.0 -2.5 protoheme IX farnesyltransferase compare
PS417_11615 -1.0 -1.5 urea ABC transporter ATP-binding protein compare
PS417_01825 -1.0 -1.6 chemotaxis protein compare
PS417_02975 -1.0 -2.3 3-dehydroquinate dehydratase compare
PS417_12355 -1.0 -1.8 magnesium chelatase compare
PS417_19350 -1.0 -2.2 GTP cyclohydrolase compare
PS417_12310 -1.0 -4.7 methionine synthase compare
PS417_21000 -1.0 -1.3 CrfX protein compare
PS417_28080 -1.0 -7.0 phosphate ABC transporter permease compare
PS417_23380 -1.0 -1.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_01790 -1.0 -4.9 glucan biosynthesis protein G compare
PS417_18530 -1.0 -4.3 O-succinylhomoserine sulfhydrylase compare
PS417_00345 -1.0 -1.1 copper-binding protein compare
PS417_22520 -1.0 -0.8 histidine kinase compare
PS417_27515 -1.0 -2.8 heme biosynthesis protein HemY compare
PS417_15105 -1.0 -5.0 membrane protein compare
PS417_10920 -1.0 -2.3 LysR family transcriptional regulator compare
PS417_05815 -0.9 -2.5 recombinase RecA compare
PS417_24585 -0.9 -5.8 AMP nucleosidase compare
PS417_15770 -0.9 -1.1 pyridoxine 5'-phosphate oxidase compare
PS417_00535 -0.9 -1.3 Holliday junction resolvase compare
PS417_16520 -0.9 -1.5 cold-shock protein compare
PS417_17445 -0.9 -2.3 sulfur oxidation protein SoxZ compare
PS417_02575 -0.9 -2.2 membrane protein compare
PS417_22575 -0.9 -3.7 exonuclease I compare
PS417_24800 -0.9 -1.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_24525 -0.9 -2.2 nuclease compare
PS417_18310 -0.9 -1.2 hypothetical protein compare
PS417_27245 -0.9 -3.0 aminotransferase DegT compare
PS417_18070 -0.9 -0.9 general secretion pathway protein GspH compare
PS417_05400 -0.9 -2.5 hypothetical protein compare
PS417_17305 -0.9 -1.3 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For motility_chemotaxis Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 in Pseudomonas simiae WCS417

For motility_chemotaxis Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms