Experiment set18IT005 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_27300 -4.5 -1.3 cell division protein ZapA compare
PS417_08155 -4.3 -2.2 integration host factor subunit beta compare
PS417_22565 -3.9 -1.2 formyltetrahydrofolate deformylase compare
PS417_19835 -3.7 -2.2 flagellar biosynthesis protein FliS compare
PS417_27795 -3.7 -1.1 orotate phosphoribosyltransferase compare
PS417_24745 -3.6 -3.1 gamma-glutamyl phosphate reductase compare
PS417_14065 -3.5 -11.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_01560 -3.4 -3.1 imidazoleglycerol-phosphate dehydratase compare
PS417_27870 -3.2 -5.3 ATP-dependent DNA helicase RecG compare
PS417_23545 -3.2 -3.4 gamma-glutamyl kinase compare
PS417_08135 -3.2 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_01855 -2.9 -2.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_02415 -2.8 -6.4 phosphoserine phosphatase compare
PS417_06375 -2.8 -1.2 deoxycytidine triphosphate deaminase compare
PS417_22450 -2.8 -2.0 ATP-dependent DNA helicase RuvA compare
PS417_01580 -2.7 -1.9 imidazole glycerol phosphate synthase compare
PS417_22445 -2.7 -3.8 ATP-dependent DNA helicase RuvB compare
PS417_23995 -2.6 -1.1 preprotein translocase subunit SecG compare
PS417_19850 -2.6 -12.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_19785 -2.5 -5.8 flagellar biogenesis protein compare
PS417_19650 -2.5 -5.3 chemotaxis protein CheW compare
PS417_26985 -2.5 -4.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_21595 -2.5 -4.4 flagellar biosynthesis protein FlgN compare
PS417_17215 -2.4 -2.5 peptidylprolyl isomerase compare
PS417_27865 -2.4 -3.5 LysR family transcriptional regulator compare
PS417_21570 -2.4 -7.3 flagellar basal body rod protein FlgB compare
PS417_01565 -2.3 -4.4 imidazole glycerol phosphate synthase compare
PS417_19860 -2.3 -14.3 flagellar hook protein FlgL compare
PS417_21430 -2.3 -2.6 3-oxoacyl-ACP synthase compare
PS417_19675 -2.3 -6.8 chemotaxis protein CheY compare
PS417_19740 -2.3 -8.0 flagellar biosynthesis protein flip compare
PS417_19730 -2.3 -3.7 flagellar biosynthesis protein FliR compare
PS417_20785 -2.3 -3.4 transcriptional regulator compare
PS417_07470 -2.3 -1.8 hypothetical protein compare
PS417_23810 -2.2 -10.6 acetolactate synthase 3 catalytic subunit compare
PS417_19795 -2.2 -9.2 flagellar assembly protein FliH compare
PS417_19710 -2.2 -11.5 flagellar biosynthesis protein FlhA compare
PS417_19695 -2.2 -10.5 flagellar biosynthesis sigma factor compare
PS417_19880 -2.2 -11.8 flagellar basal body L-ring protein compare
PS417_09245 -2.2 -2.1 recombinase RdgC compare
PS417_19765 -2.1 -10.4 flagellar hook-length control protein compare
PS417_27040 -2.1 -3.8 3-phosphoglycerate dehydrogenase compare
PS417_00185 -2.1 -3.9 tryptophan synthase subunit beta compare
PS417_19745 -2.1 -6.5 flagellar assembly protein FliO compare
PS417_08685 -2.1 -1.7 flagellar hook-length control protein FliK compare
PS417_02005 -2.1 -8.7 glutamate synthase compare
PS417_19885 -2.1 -3.8 flagellar basal body rod protein FlgG compare
PS417_21585 -2.1 -7.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_19755 -2.0 -2.1 flagellar motor switch protein FliM compare
PS417_19840 -2.0 -7.8 flagellar cap protein FliD compare
PS417_19865 -2.0 -11.0 flagellar hook protein FlgK compare
PS417_00180 -2.0 -3.1 tryptophan synthase subunit alpha compare
PS417_19735 -2.0 -7.6 flagellar biosynthesis protein FliQ compare
PS417_19800 -2.0 -3.5 flagellar motor switch protein FliG compare
PS417_19665 -2.0 -5.2 flagellar motor protein MotD compare
PS417_06680 -2.0 -7.0 nuclease PIN compare
PS417_02000 -2.0 -9.7 glutamate synthase compare
PS417_12805 -2.0 -9.5 glycogen branching protein compare
PS417_07140 -1.9 -3.3 peptidase M48 compare
PS417_19725 -1.9 -7.4 flagellar biosynthesis protein FlhB compare
PS417_04420 -1.9 -9.4 histidinol dehydrogenase compare
PS417_23805 -1.9 -5.9 acetolactate synthase 3 regulatory subunit compare
PS417_06200 -1.9 -6.4 protein-PII uridylyltransferase compare
PS417_21555 -1.9 -9.0 flagellar hook protein FlgE compare
PS417_19805 -1.9 -4.8 flagellar M-ring protein FliF compare
PS417_19660 -1.9 -4.2 cobalamin biosynthesis protein CobQ compare
PS417_21565 -1.9 -5.7 flagellar basal body rod protein FlgC compare
PS417_24710 -1.9 -9.0 lipoprotein compare
PS417_04305 -1.8 -1.7 aspartate ammonia-lyase compare
PS417_23775 -1.8 -2.2 exodeoxyribonuclease V subunit beta compare
PS417_21575 -1.8 -5.2 chemotaxis protein compare
PS417_02975 -1.8 -3.8 3-dehydroquinate dehydratase compare
PS417_12855 -1.8 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02485 -1.8 -4.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_01635 -1.8 -5.2 nitrogen regulation protein NR(I) compare
PS417_21630 -1.8 -2.4 magnesium transporter compare
PS417_19790 -1.8 -3.6 ATP synthase compare
PS417_05365 -1.8 -1.9 FAD-binding protein compare
PS417_07640 -1.8 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_19350 -1.7 -3.8 GTP cyclohydrolase compare
PS417_21035 -1.7 -7.7 multidrug transporter compare
PS417_27195 -1.7 -1.5 N-acetylglutamate synthase compare
PS417_18310 -1.7 -1.2 hypothetical protein compare
PS417_07615 -1.7 -6.1 TetR family transcriptional regulator compare
PS417_01920 -1.7 -0.9 ATP-dependent protease subunit HslV compare
PS417_01640 -1.6 -7.1 histidine kinase compare
PS417_04380 -1.6 -1.0 ABC transporter permease compare
PS417_23025 -1.6 -4.9 murein transglycosylase compare
PS417_19690 -1.6 -5.5 histidine kinase compare
PS417_01575 -1.6 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19825 -1.6 -8.6 ATPase AAA compare
PS417_10405 -1.6 -1.4 filamentous hemagglutinin compare
PS417_27835 -1.6 -8.5 endoribonuclease compare
PS417_18600 -1.6 -2.3 isopropylmalate isomerase compare
PS417_01850 -1.5 -3.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_19870 -1.5 -4.4 flagellar rod assembly protein FlgJ compare
PS417_07170 -1.5 -3.7 hypothetical protein compare
PS417_08090 -1.5 -0.8 3-oxoacyl-ACP reductase compare
PS417_28230 -1.5 -2.5 transcriptional regulator compare
PS417_19955 -1.5 -2.1 hypothetical protein compare
PS417_04415 -1.5 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02510 -1.5 -5.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_02555 -1.4 -8.5 exoribonuclease R compare
PS417_26730 -1.4 -0.5 pyrroline-5-carboxylate reductase compare
PS417_27520 -1.4 -2.5 uroporphyrin-III methyltransferase compare
PS417_27515 -1.4 -3.9 heme biosynthesis protein HemY compare
PS417_25720 -1.4 -7.2 anthranilate synthase component II compare
PS417_18595 -1.4 -4.6 3-isopropylmalate dehydratase compare
PS417_23800 -1.4 -8.4 ketol-acid reductoisomerase compare
PS417_21480 -1.4 -1.2 23S rRNA pseudouridylate synthase compare
PS417_05885 -1.4 -5.6 potassium transporter Kup compare
PS417_25725 -1.4 -9.2 anthranilate synthase component I compare
PS417_02740 -1.4 -2.2 LysR family transcriptional regulator compare
PS417_18585 -1.4 -5.2 3-isopropylmalate dehydrogenase compare
PS417_28070 -1.3 -6.1 phosphate ABC transporter ATP-binding protein compare
PS417_04475 -1.3 -4.2 hypothetical protein compare
PS417_00755 -1.3 -0.7 biofilm PGA synthesis protein PgaD compare
PS417_19655 -1.3 -2.5 chemotaxis protein CheW compare
PS417_22380 -1.3 -2.7 hypothetical protein compare
PS417_05815 -1.3 -2.8 recombinase RecA compare
PS417_00510 -1.3 -1.0 membrane protein compare
PS417_04060 -1.3 -3.6 dipeptide ABC transporter, permease component (from data) compare
PS417_12310 -1.3 -5.7 methionine synthase compare
PS417_16490 -1.3 -1.3 cell division protein FtsK compare
PS417_24615 -1.3 -1.0 hypothetical protein compare
PS417_23770 -1.3 -0.8 exodeoxyribonuclease V subunit alpha compare
PS417_20160 -1.3 -2.6 cysteine synthase compare
PS417_18560 -1.3 -5.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_13010 -1.3 -2.4 alpha/beta hydrolase compare
PS417_26890 -1.3 -5.9 dihydroxy-acid dehydratase compare
PS417_19705 -1.2 -1.8 flagellar biosynthesis regulator FlhF compare
PS417_26995 -1.2 -5.6 phosphoserine phosphatase compare
PS417_08220 -1.2 -1.0 epimerase compare
PS417_15495 -1.2 -1.9 FAD-dependent oxidoreductase compare
PS417_07165 -1.2 -5.7 dihydrodipicolinate synthase compare
PS417_17755 -1.2 -2.3 hypothetical protein compare
PS417_18425 -1.2 -1.5 sporulation protein compare
PS417_24775 -1.2 -3.0 dehydratase compare
PS417_22850 -1.2 -4.5 virulence factor family protein compare
PS417_04595 -1.2 -1.8 cell division protein MraZ compare
PS417_16555 -1.2 -1.6 cupin compare
PS417_27800 -1.2 -1.9 exodeoxyribonuclease III compare
PS417_18530 -1.2 -4.3 O-succinylhomoserine sulfhydrylase compare
PS417_08730 -1.2 -1.7 cytochrome C compare
PS417_20775 -1.1 -3.5 coproporphyrinogen III oxidase compare
PS417_04390 -1.1 -2.4 toluene tolerance protein compare
PS417_25710 -1.1 -1.2 indole-3-glycerol-phosphate synthase compare
PS417_23380 -1.1 -2.4 cytochrome o ubiquinol oxidase subunit III compare
PS417_24705 -1.1 -1.9 D-alanyl-D-alanine carboxypeptidase compare
PS417_23110 -1.1 -5.4 2-isopropylmalate synthase compare
PS417_19285 -1.1 -1.4 ankyrin compare
PS417_23375 -1.1 -1.6 cytochrome C oxidase compare
PS417_20985 -1.1 -1.1 porin compare
PS417_03045 -1.1 -1.5 hypothetical protein compare
PS417_18545 -1.1 -2.0 cell division protein compare
PS417_22840 -1.1 -1.7 tRNA-Met compare
PS417_00085 -1.1 -2.2 16S rRNA methyltransferase compare
PS417_06095 -1.1 -1.2 energy transducer TonB compare
PS417_28080 -1.1 -7.1 phosphate ABC transporter permease compare
PS417_16005 -1.1 -2.0 ATPase compare
PS417_24525 -1.1 -1.9 nuclease compare
PS417_18445 -1.1 -3.0 glycerol-3-phosphatase compare
PS417_20715 -1.1 -1.5 cytochrome Cbb3 compare
PS417_18540 -1.0 -2.5 colicin V production CvpA compare
PS417_05785 -1.0 -2.5 tail protein compare
PS417_18710 -1.0 -2.4 hypothetical protein compare
PS417_21655 -1.0 -0.9 aspartate kinase compare
PS417_26740 -1.0 -3.3 homoserine acetyltransferase compare
PS417_08410 -1.0 -1.8 hypothetical protein compare
PS417_15030 -1.0 -1.1 short-chain dehydrogenase compare
PS417_23170 -1.0 -1.6 FeS assembly protein IscX compare
PS417_08125 -1.0 -0.5 prephenate dehydratase compare
PS417_23910 -1.0 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_25315 -1.0 -3.0 membrane protein compare
PS417_00550 -1.0 -0.9 hypothetical protein compare
PS417_26370 -1.0 -3.0 RNA helicase compare
PS417_22795 -1.0 -1.2 exclusion suppressor FxsA compare
PS417_16720 -1.0 -0.9 membrane protein compare
PS417_20685 -1.0 -2.5 CAAX protease compare
PS417_01795 -1.0 -6.7 glucosyltransferase MdoH compare
PS417_22570 -1.0 -0.7 H-NS histone compare
PS417_23135 -1.0 -1.6 GTP-binding protein compare
PS417_00045 -1.0 -1.3 glycerol acyltransferase compare
PS417_13510 -1.0 -1.0 polyketide cyclase compare
PS417_04650 -1.0 -0.5 D-alanine--D-alanine ligase compare
PS417_08540 -1.0 -1.7 RNA helicase compare
PS417_15915 -1.0 -1.1 hypothetical protein compare
PS417_06205 -1.0 -4.7 methionine aminopeptidase compare
PS417_27615 -1.0 -5.5 ammonia channel protein compare
PS417_19830 -1.0 -4.7 flagellar assembly protein FliT compare
PS417_25715 -1.0 -4.1 anthranilate phosphoribosyltransferase compare
PS417_19945 -1.0 -2.3 MarR family transcriptional regulator compare
PS417_20700 -0.9 -5.2 cbb3-type cytochrome c oxidase subunit I compare
PS417_15085 -0.9 -2.6 ATPase AAA compare
PS417_23370 -0.9 -2.5 protoheme IX farnesyltransferase compare
PS417_12515 -0.9 -1.9 lactate dehydrogenase compare
PS417_07565 -0.9 -1.1 hypothetical protein compare
PS417_08335 -0.9 -1.1 hypothetical protein compare
PS417_22050 -0.9 -3.2 ribonuclease BN compare
PS417_28450 -0.9 -1.5 XRE family transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For motility_chemotaxis Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 in Pseudomonas simiae WCS417

For motility_chemotaxis Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms