Experiment set18IT005 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most detrimental genes:

  gene name fitness t score description  
PS417_15710 +2.1 3.3 nitrate reductase compare
PS417_26120 +1.4 1.5 hypothetical protein compare
PS417_19095 +1.4 2.2 hypothetical protein compare
PS417_25270 +1.3 3.3 NrdR family transcriptional regulator compare
PS417_24840 +1.3 2.1 hypothetical protein compare
PS417_22375 +1.2 1.5 cold-shock protein compare
PS417_04835 +1.2 1.7 hemolysin D compare
PS417_09470 +1.2 1.4 hypothetical protein compare
PS417_17780 +1.2 1.5 Ais protein compare
PS417_20635 +1.2 1.6 ABC transporter ATP-binding protein compare
PS417_18040 +1.2 2.5 general secretion pathway protein GspN compare
PS417_11950 +1.2 2.3 hypothetical protein compare
PS417_10385 +1.2 0.9 peroxiredoxin compare
PS417_01605 +1.1 1.1 phosphoglycerate mutase compare
PS417_22325 +1.1 6.2 amino acid APC transporter compare
PS417_20610 +1.1 2.0 hypothetical protein compare
PS417_00975 +1.0 2.0 hypothetical protein compare
PS417_01875 +1.0 1.1 polyhydroxyalkanoic acid system protein compare
PS417_22990 +1.0 1.4 iron dicitrate transport regulator FecR compare
PS417_07840 +1.0 2.8 hypothetical protein compare
PS417_06355 +1.0 4.1 protein-L-isoaspartate O-methyltransferase compare
PS417_05235 +0.9 1.5 peptidase inhibitor I42 compare
PS417_19200 +0.9 1.3 fumarate hydratase compare
PS417_00370 +0.9 1.1 hypothetical protein compare
PS417_25155 +0.9 1.4 hypothetical protein compare
PS417_07875 +0.9 1.1 hypothetical protein compare
PS417_15705 +0.9 1.3 nitrate reductase compare
PS417_21625 +0.9 1.3 DNA-binding protein compare
PS417_25825 +0.9 1.7 sulfurtransferase compare
PS417_02980 +0.9 1.1 chemotaxis protein compare
PS417_05975 +0.9 0.9 chemotaxis protein CheW compare
PS417_08435 +0.8 0.8 pilus assembly protein PilZ compare
PS417_12400 +0.8 2.7 oxidoreductase compare
PS417_08665 +0.8 3.7 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_14295 +0.8 2.0 AraC family transcriptional regulator compare
PS417_06710 +0.8 1.4 beta-ketoadipyl CoA thiolase compare
PS417_27005 +0.8 1.1 membrane protein compare
PS417_21475 +0.8 1.5 HAD family hydrolase compare
PS417_04530 +0.8 1.7 glycerate dehydrogenase compare
PS417_06400 +0.8 2.2 succinylglutamate desuccinylase compare
PS417_08025 +0.8 1.3 acetylornithine aminotransferase compare
PS417_01095 +0.8 0.7 amino acid ABC transporter ATP-binding protein compare
PS417_23150 +0.8 1.9 Cro/Cl family transcriptional regulator compare
PS417_14905 +0.8 2.7 C4-dicarboxylate ABC transporter compare
PS417_26155 +0.8 1.1 hypothetical protein compare
PS417_02720 +0.8 0.9 TetR family transcriptional regulator compare
PS417_01430 +0.8 3.1 chromosome segregation protein SMC compare
PS417_05535 +0.8 1.3 Fis family transcriptional regulator compare
PS417_19275 +0.8 1.4 hypothetical protein compare
PS417_23950 +0.8 1.5 polynucleotide phosphorylase/polyadenylase compare
PS417_21995 +0.8 2.7 hypothetical protein compare
PS417_11475 +0.8 1.5 membrane protein compare
PS417_01645 +0.8 1.8 cupin compare
PS417_06845 +0.8 1.3 lipoprotein compare
PS417_27285 +0.7 5.6 Xaa-Pro aminopeptidase compare
PS417_26275 +0.7 2.1 glycine/betaine ABC transporter substrate-binding protein compare
PS417_16825 +0.7 2.2 membrane protein compare
PS417_02105 +0.7 1.4 acyl carrier protein compare
PS417_20645 +0.7 5.4 membrane protein compare
PS417_08225 +0.7 2.4 acetolactate synthase compare
PS417_09865 +0.7 1.4 hypothetical protein compare
PS417_01750 +0.7 1.0 histidine ammonia-lyase compare
PS417_16735 +0.7 2.3 aldehyde dehydrogenase compare
PS417_09220 +0.7 1.8 cupin compare
PS417_18885 +0.7 1.3 GntR family transcriptional regulator compare
PS417_05985 +0.7 1.5 chemotaxis protein CheY compare
PS417_09440 +0.7 1.9 MerR family transcriptional regulator compare
PS417_04225 +0.7 1.7 conjugal transfer protein TraR compare
PS417_09010 +0.7 1.8 phosphohistidine phosphatase compare
PS417_15715 +0.7 3.2 nitrate reductase compare
PS417_26150 +0.7 1.9 acyltransferase compare
PS417_23580 +0.7 0.8 peptidylprolyl isomerase compare
PS417_23210 +0.7 1.5 serine acetyltransferase compare
PS417_24520 +0.7 1.7 DNA polymerase III subunit epsilon compare
PS417_00660 +0.7 2.4 DSBA oxidoreductase compare
PS417_27590 +0.7 2.2 hypothetical protein compare
PS417_12355 +0.7 1.3 magnesium chelatase compare
PS417_01360 +0.6 3.1 4-oxalocrotonate tautomerase compare
PS417_16295 +0.6 2.4 hypothetical protein compare
PS417_18205 +0.6 1.3 aldehyde dehydrogenase compare
PS417_04015 +0.6 2.8 choline ABC transporter permease compare
PS417_24715 +0.6 2.8 lytic transglycosylase compare
PS417_15590 +0.6 1.8 hypothetical protein compare
PS417_21220 +0.6 2.6 acetyl-CoA acetyltransferase compare
PS417_22030 +0.6 3.8 glutathione S-transferase compare
PS417_13290 +0.6 2.3 AraC family transcriptional regulator compare
PS417_24680 +0.6 4.9 murein transglycosylase compare
PS417_03630 +0.6 2.0 hypothetical protein compare
PS417_15935 +0.6 1.6 Rrf2 family transcriptional regulator compare
PS417_23595 +0.6 2.3 D-aminoacylase compare
PS417_22945 +0.6 1.2 phosphoribosylglycinamide formyltransferase compare
PS417_21845 +0.6 2.1 membrane protein compare
PS417_02765 +0.6 1.2 phosphate starvation-inducible protein PsiF compare
PS417_05470 +0.6 2.0 DSBA oxidoreductase compare
PS417_04975 +0.6 1.0 response regulator receiver protein compare
PS417_10330 +0.6 1.4 histidine kinase compare
PS417_05550 +0.6 2.7 amino acid ABC transporter permease compare
PS417_12390 +0.6 1.6 hypothetical protein compare
PS417_18160 +0.6 1.8 YeeE/YedE compare
PS417_12520 +0.6 1.6 hypothetical protein compare
PS417_26530 +0.6 0.6 hypothetical protein compare
PS417_03905 +0.6 1.7 fimbrial protein compare
PS417_17425 +0.6 3.0 hypothetical protein compare
PS417_02210 +0.6 2.7 diguanylate cyclase compare
PS417_16920 +0.6 2.1 multidrug RND transporter compare
PS417_02800 +0.6 1.3 acetyltransferase compare
PS417_03515 +0.6 1.2 type III secretion protein compare
PS417_19425 +0.6 0.7 allantoicase compare
PS417_20970 +0.6 4.0 MFS transporter compare
PS417_19360 +0.6 1.2 hypothetical protein compare
PS417_28140 +0.6 1.3 asparaginase compare
PS417_19615 +0.6 2.3 chemotaxis protein CheW compare
PS417_14890 +0.6 1.1 LysR family transcriptional regulator compare
PS417_00455 +0.6 1.0 hypothetical protein compare
PS417_11965 +0.6 1.0 GCN5 family acetyltransferase compare
PS417_27675 +0.6 1.1 xanthine phosphoribosyltransferase compare
PS417_18920 +0.6 1.7 hypothetical protein compare
PS417_19190 +0.6 2.0 BolA family transcriptional regulator compare
PS417_20595 +0.6 3.7 hypothetical protein compare
PS417_04265 +0.6 3.1 septum formation protein Maf compare
PS417_10640 +0.6 1.6 GNAT family acetyltransferase compare
PS417_23625 +0.6 1.6 LysR family transcriptional regulator compare
PS417_20965 +0.6 2.9 histidine kinase compare
PS417_07795 +0.6 2.7 hypothetical protein compare
PS417_02280 +0.6 0.7 GlcNAc-PI de-N-acetylase compare
PS417_19075 +0.6 3.4 ABC transporter ATP-binding protein compare
PS417_06575 +0.6 1.3 DoxX compare
PS417_06560 +0.6 2.8 membrane protein compare
PS417_27610 +0.5 2.4 hypothetical protein compare
PS417_07765 +0.5 1.8 hypothetical protein compare
PS417_05525 +0.5 1.8 Fis family transcriptional regulator compare
PS417_16715 +0.5 1.1 DoxX family protein compare
PS417_14825 +0.5 1.8 hypothetical protein compare
PS417_25985 +0.5 1.2 dethiobiotin synthetase compare
PS417_15720 +0.5 3.6 nitrate reductase compare
PS417_04800 +0.5 0.8 alginate O-acetyltransferase compare
PS417_06245 +0.5 0.6 zinc metallopeptidase RseP compare
PS417_14845 +0.5 2.1 endoribonuclease L-PSP compare
PS417_22505 +0.5 1.3 mechanosensitive ion channel protein MscS compare
PS417_12110 +0.5 1.2 ATP-binding protein compare
PS417_14760 +0.5 2.6 membrane protein compare
PS417_00830 +0.5 1.8 hypothetical protein compare
PS417_23440 +0.5 3.3 alpha/beta hydrolase compare
PS417_14735 +0.5 2.7 Nitrate reductase (EC 1.7.99.4) (from data) compare
PS417_24030 +0.5 1.0 MFS transporter compare
PS417_27380 +0.5 1.8 GntR family transcriptional regulator compare
PS417_22060 +0.5 0.8 hypothetical protein compare
PS417_00715 +0.5 2.2 required for octanoate transport, together with NodT, MFP, and FUSC proteins (PS417_00725, PS417_00720, PS417_00710) (from data) compare
PS417_06835 +0.5 1.4 phospholipase compare
PS417_10675 +0.5 0.5 TetR family transcriptional regulator compare
PS417_02225 +0.5 0.8 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_11905 +0.5 2.7 chemotaxis protein compare
PS417_16515 +0.5 1.1 Clp protease ClpS compare
PS417_25135 +0.5 1.2 hypothetical protein compare
PS417_11215 +0.5 1.4 arylesterase compare
PS417_02385 +0.5 0.9 esterase compare
PS417_03395 +0.5 2.5 lysine transporter LysE compare
PS417_20940 +0.5 1.2 invasion protein IagB compare
PS417_19065 +0.5 0.6 monooxygenase compare
PS417_00790 +0.5 1.5 curli production assembly protein CsgG compare
PS417_11090 +0.5 1.7 LacI family transcriptional regulator compare
PS417_16475 +0.5 2.0 camphor resistance protein CrcB compare
PS417_04840 +0.5 2.4 glycosyl transferase compare
PS417_16665 +0.5 1.0 hypothetical protein compare
PS417_12160 +0.5 1.2 Fis family transcriptional regulator compare
PS417_07870 +0.5 1.1 hypothetical protein compare
PS417_02955 +0.5 1.8 hypothetical protein compare
PS417_03215 +0.5 2.1 8-oxoguanine deaminase compare
PS417_11865 +0.5 0.8 xylose isomerase compare
PS417_04865 +0.5 2.0 molybdenum cofactor biosynthesis protein MoaC compare
PS417_07355 +0.5 2.1 transcriptional regulator compare
PS417_06600 +0.5 0.5 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_26220 +0.5 1.1 Rieske (2Fe-2S) protein compare
PS417_23300 +0.5 1.3 hypothetical protein compare
PS417_06350 +0.5 2.9 stationary phase survival protein SurE compare
PS417_03100 +0.5 0.6 pilus assembly protein compare
PS417_25380 +0.5 1.3 hypothetical protein compare
PS417_02160 +0.5 0.7 hypothetical protein compare
PS417_02870 +0.5 2.6 TonB-dependent receptor compare
PS417_11080 +0.5 1.6 dehydrogenase compare
PS417_19550 +0.5 1.6 thioesterase compare
PS417_26270 +0.5 1.0 AraC family transcriptional regulator compare
PS417_01715 +0.5 0.5 hypothetical protein compare
PS417_03030 +0.5 1.5 pyrophosphatase compare
PS417_14245 +0.5 0.8 hypothetical protein compare
PS417_06905 +0.5 1.9 alcohol dehydrogenase compare
PS417_19010 +0.5 1.3 LysR family transcriptional regulator compare
PS417_19430 +0.5 1.1 ureidoglycolate hydrolase compare
PS417_15225 +0.5 1.5 alpha/beta hydrolase compare
PS417_03060 +0.5 2.8 pilus assembly protein TadE compare
PS417_11725 +0.5 1.6 peptidase M19 compare
PS417_23665 +0.5 1.1 Muconolactone isomerase (EC 5.3.3.4) (from data) compare
PS417_12660 +0.5 1.2 hypothetical protein compare
PS417_19145 +0.5 3.0 membrane protein compare
PS417_24165 +0.5 1.2 hypothetical protein compare
PS417_16255 +0.5 1.1 RNA polymerase sigma factor compare
PS417_11555 +0.5 1.0 (2Fe-2S)-binding protein compare
PS417_18980 +0.5 0.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_27705 +0.5 0.8 amino acid dehydrogenase compare
PS417_16495 +0.5 1.5 leucyl/phenylalanyl-tRNA--protein transferase compare


Specific Phenotypes

For 1 genes in this experiment

For motility_chemotaxis Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 in Pseudomonas simiae WCS417

For motility_chemotaxis Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms