Experiment set18IT003 for Pseudomonas simiae WCS417

Compare to:

Chemotaxis:Motility:: Method=Plug_approach; Chemical=casamino acids; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

200 most important genes:

  gene name fitness t score description  
PS417_22565 -3.9 -1.1 formyltetrahydrofolate deformylase compare
PS417_22450 -3.9 -1.8 ATP-dependent DNA helicase RuvA compare
PS417_14065 -3.8 -11.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_24745 -3.8 -2.1 gamma-glutamyl phosphate reductase compare
PS417_27795 -3.6 -1.0 orotate phosphoribosyltransferase compare
PS417_01565 -3.1 -5.1 imidazole glycerol phosphate synthase compare
PS417_21480 -3.1 -2.0 23S rRNA pseudouridylate synthase compare
PS417_08620 -3.1 -1.4 hypothetical protein compare
PS417_17215 -3.1 -2.9 peptidylprolyl isomerase compare
PS417_23545 -3.0 -2.1 gamma-glutamyl kinase compare
PS417_24710 -2.9 -7.5 lipoprotein compare
PS417_19665 -2.9 -4.2 flagellar motor protein MotD compare
PS417_21575 -2.8 -6.7 chemotaxis protein compare
PS417_00195 -2.8 -2.7 hypothetical protein compare
PS417_06375 -2.7 -1.0 deoxycytidine triphosphate deaminase compare
PS417_01635 -2.7 -7.2 nitrogen regulation protein NR(I) compare
PS417_19650 -2.7 -6.2 chemotaxis protein CheW compare
PS417_19835 -2.7 -2.0 flagellar biosynthesis protein FliS compare
PS417_27040 -2.7 -3.0 3-phosphoglycerate dehydrogenase compare
PS417_19675 -2.7 -7.1 chemotaxis protein CheY compare
PS417_19850 -2.6 -7.9 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_23995 -2.6 -1.0 preprotein translocase subunit SecG compare
PS417_19755 -2.6 -2.1 flagellar motor switch protein FliM compare
PS417_21595 -2.6 -5.4 flagellar biosynthesis protein FlgN compare
PS417_25710 -2.6 -1.6 indole-3-glycerol-phosphate synthase compare
PS417_06200 -2.5 -7.2 protein-PII uridylyltransferase compare
PS417_19725 -2.5 -5.7 flagellar biosynthesis protein FlhB compare
PS417_02000 -2.5 -12.5 glutamate synthase compare
PS417_16490 -2.4 -1.8 cell division protein FtsK compare
PS417_27865 -2.4 -2.7 LysR family transcriptional regulator compare
PS417_19860 -2.4 -13.9 flagellar hook protein FlgL compare
PS417_21430 -2.4 -2.4 3-oxoacyl-ACP synthase compare
PS417_01920 -2.3 -0.8 ATP-dependent protease subunit HslV compare
PS417_08220 -2.3 -1.2 epimerase compare
PS417_02225 -2.3 -3.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_01640 -2.3 -6.5 histidine kinase compare
PS417_02005 -2.2 -11.2 glutamate synthase compare
PS417_06680 -2.2 -8.0 nuclease PIN compare
PS417_19655 -2.2 -3.8 chemotaxis protein CheW compare
PS417_19840 -2.2 -9.0 flagellar cap protein FliD compare
PS417_19740 -2.2 -9.0 flagellar biosynthesis protein flip compare
PS417_24800 -2.2 -6.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_19885 -2.1 -2.9 flagellar basal body rod protein FlgG compare
PS417_27195 -2.1 -1.3 N-acetylglutamate synthase compare
PS417_27300 -2.1 -1.0 cell division protein ZapA compare
PS417_19710 -2.1 -12.6 flagellar biosynthesis protein FlhA compare
PS417_19880 -2.1 -7.9 flagellar basal body L-ring protein compare
PS417_25720 -2.1 -6.5 anthranilate synthase component II compare
PS417_19660 -2.1 -5.3 cobalamin biosynthesis protein CobQ compare
PS417_01575 -2.1 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_19690 -2.1 -8.3 histidine kinase compare
PS417_19800 -2.1 -2.1 flagellar motor switch protein FliG compare
PS417_19695 -2.1 -9.9 flagellar biosynthesis sigma factor compare
PS417_19805 -2.1 -4.7 flagellar M-ring protein FliF compare
PS417_21570 -2.1 -7.6 flagellar basal body rod protein FlgB compare
PS417_03560 -2.0 -1.7 GTP-binding protein compare
PS417_27155 -2.0 -1.7 aliphatic sulfonates transport ATP-binding subunit compare
PS417_19870 -2.0 -4.2 flagellar rod assembly protein FlgJ compare
PS417_04475 -2.0 -4.2 hypothetical protein compare
PS417_19735 -2.0 -6.4 flagellar biosynthesis protein FliQ compare
PS417_19785 -2.0 -4.0 flagellar biogenesis protein compare
PS417_05885 -2.0 -7.5 potassium transporter Kup compare
PS417_19765 -2.0 -8.5 flagellar hook-length control protein compare
PS417_19795 -2.0 -10.9 flagellar assembly protein FliH compare
PS417_01850 -2.0 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01605 -2.0 -1.0 phosphoglycerate mutase compare
PS417_27135 -1.9 -0.7 glutamine synthetase compare
PS417_01855 -1.9 -2.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_27075 -1.9 -2.8 thiol-disulfide isomerase compare
PS417_07165 -1.9 -2.5 dihydrodipicolinate synthase compare
PS417_00045 -1.9 -1.7 glycerol acyltransferase compare
PS417_19865 -1.9 -7.6 flagellar hook protein FlgK compare
PS417_23775 -1.9 -1.6 exodeoxyribonuclease V subunit beta compare
PS417_19790 -1.9 -3.7 ATP synthase compare
PS417_20985 -1.9 -1.2 porin compare
PS417_12805 -1.9 -11.2 glycogen branching protein compare
PS417_27800 -1.9 -1.3 exodeoxyribonuclease III compare
PS417_21565 -1.8 -4.3 flagellar basal body rod protein FlgC compare
PS417_19745 -1.8 -5.9 flagellar assembly protein FliO compare
PS417_02485 -1.8 -4.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_20160 -1.8 -2.8 cysteine synthase compare
PS417_19730 -1.8 -3.5 flagellar biosynthesis protein FliR compare
PS417_18560 -1.8 -6.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_21585 -1.8 -9.3 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_20785 -1.8 -2.4 transcriptional regulator compare
PS417_25725 -1.8 -9.6 anthranilate synthase component I compare
PS417_05595 -1.8 -7.9 ornithine carbamoyltransferase compare
PS417_23105 -1.8 -1.7 hypothetical protein compare
PS417_19350 -1.8 -3.3 GTP cyclohydrolase compare
PS417_26645 -1.8 -2.6 chemotaxis protein compare
PS417_19705 -1.8 -2.3 flagellar biosynthesis regulator FlhF compare
PS417_26985 -1.7 -4.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_25715 -1.7 -3.9 anthranilate phosphoribosyltransferase compare
PS417_04420 -1.7 -8.0 histidinol dehydrogenase compare
PS417_16555 -1.7 -1.8 cupin compare
PS417_07170 -1.7 -3.8 hypothetical protein compare
PS417_21555 -1.7 -8.4 flagellar hook protein FlgE compare
PS417_23810 -1.7 -7.9 acetolactate synthase 3 catalytic subunit compare
PS417_19825 -1.7 -12.4 ATPase AAA compare
PS417_23025 -1.7 -4.2 murein transglycosylase compare
PS417_00475 -1.7 -3.5 membrane protein compare
PS417_15135 -1.7 -1.7 hypothetical protein compare
PS417_26655 -1.6 -4.1 chemotaxis protein compare
PS417_02975 -1.6 -3.7 3-dehydroquinate dehydratase compare
PS417_06945 -1.6 -1.2 membrane protein compare
PS417_01560 -1.6 -2.1 imidazoleglycerol-phosphate dehydratase compare
PS417_22445 -1.6 -3.4 ATP-dependent DNA helicase RuvB compare
PS417_22850 -1.6 -6.4 virulence factor family protein compare
PS417_22990 -1.6 -1.4 iron dicitrate transport regulator FecR compare
PS417_07140 -1.6 -2.3 peptidase M48 compare
PS417_08540 -1.5 -2.1 RNA helicase compare
PS417_22630 -1.5 -1.7 hypothetical protein compare
PS417_04380 -1.5 -0.9 ABC transporter permease compare
PS417_17680 -1.5 -2.0 ABC transporter compare
PS417_19600 -1.5 -1.1 exonuclease compare
PS417_27870 -1.5 -2.7 ATP-dependent DNA helicase RecG compare
PS417_07620 -1.5 -2.0 beta-hexosaminidase compare
PS417_02415 -1.5 -2.1 phosphoserine phosphatase compare
PS417_15495 -1.5 -2.0 FAD-dependent oxidoreductase compare
PS417_28070 -1.4 -5.5 phosphate ABC transporter ATP-binding protein compare
PS417_22210 -1.4 -1.4 AraC family transcriptional regulator compare
PS417_06530 -1.4 -2.5 membrane protein compare
PS417_01795 -1.4 -8.7 glucosyltransferase MdoH compare
PS417_14940 -1.4 -1.7 LysR family transcriptional regulator compare
PS417_01580 -1.4 -1.4 imidazole glycerol phosphate synthase compare
PS417_09245 -1.4 -1.6 recombinase RdgC compare
PS417_10125 -1.4 -2.6 hypothetical protein compare
PS417_04275 -1.4 -8.3 hypothetical protein compare
PS417_27515 -1.3 -2.6 heme biosynthesis protein HemY compare
PS417_22845 -1.3 -10.6 membrane protein compare
PS417_04415 -1.3 -5.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_27425 -1.3 -6.1 exopolyphosphatase compare
PS417_02280 -1.3 -1.4 GlcNAc-PI de-N-acetylase compare
PS417_03380 -1.3 -1.2 hypothetical protein compare
PS417_09325 -1.3 -3.0 peptidase S41 compare
PS417_21390 -1.3 -4.3 hypothetical protein compare
PS417_01955 -1.3 -5.3 peptidase compare
PS417_03260 -1.3 -1.2 5S ribosomal RNA compare
PS417_23845 -1.3 -3.5 hemin ABC transporter ATP-binding protein compare
PS417_25315 -1.3 -3.8 membrane protein compare
PS417_22175 -1.3 -1.6 amino acid transporter LysE compare
PS417_18545 -1.3 -2.1 cell division protein compare
PS417_22520 -1.3 -1.3 histidine kinase compare
PS417_04080 -1.3 -1.5 peptide ABC transporter substrate-binding protein compare
PS417_03475 -1.2 -1.6 type III secretion protein compare
PS417_26890 -1.2 -5.5 dihydroxy-acid dehydratase compare
PS417_00185 -1.2 -1.8 tryptophan synthase subunit beta compare
PS417_19955 -1.2 -1.5 hypothetical protein compare
PS417_05635 -1.2 -4.9 membrane protein compare
PS417_00180 -1.2 -1.8 tryptophan synthase subunit alpha compare
PS417_21425 -1.2 -1.5 4-amino-4-deoxychorismate lyase compare
PS417_03100 -1.2 -0.9 pilus assembly protein compare
PS417_01790 -1.2 -5.8 glucan biosynthesis protein G compare
PS417_07615 -1.2 -4.1 TetR family transcriptional regulator compare
PS417_15110 -1.2 -3.8 protein BatD compare
PS417_19830 -1.2 -2.9 flagellar assembly protein FliT compare
PS417_12870 -1.2 -1.3 enoyl-CoA hydratase compare
PS417_24115 -1.1 -1.2 hypothetical protein compare
PS417_02555 -1.1 -6.6 exoribonuclease R compare
PS417_08135 -1.1 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_14980 -1.1 -0.8 universal stress protein UspA compare
PS417_22620 -1.1 -2.9 pyruvate kinase compare
PS417_04050 -1.1 -1.8 peptide ABC transporter ATP-binding protein compare
PS417_15105 -1.1 -4.2 membrane protein compare
PS417_24835 -1.1 -3.0 hypothetical protein compare
PS417_12310 -1.1 -4.8 methionine synthase compare
PS417_24430 -1.1 -1.1 3-dehydroquinate dehydratase compare
PS417_00405 -1.1 -4.5 DNA polymerase I compare
PS417_27835 -1.1 -3.9 endoribonuclease compare
PS417_18540 -1.1 -2.7 colicin V production CvpA compare
PS417_10025 -1.1 -1.0 bacteriophage lambda NinG family protein compare
PS417_17070 -1.1 -1.4 RNA polymerase subunit sigma-24 compare
PS417_05785 -1.0 -1.6 tail protein compare
PS417_10095 -1.0 -1.2 hypothetical protein compare
PS417_00915 -1.0 -2.2 aminotransferase compare
PS417_02560 -1.0 -0.8 23S rRNA methyltransferase compare
PS417_24615 -1.0 -0.9 hypothetical protein compare
PS417_08170 -1.0 -5.5 capsular biosynthesis protein compare
PS417_20705 -1.0 -2.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_26770 -1.0 -1.2 tRNA (guanine-N7)-methyltransferase compare
PS417_27520 -1.0 -1.8 uroporphyrin-III methyltransferase compare
PS417_02510 -1.0 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_22345 -1.0 -3.3 acetyl-CoA carboxylase compare
PS417_06540 -1.0 -1.1 membrane protein compare
PS417_26850 -1.0 -0.6 twin-arginine translocation pathway signal protein compare
PS417_08945 -1.0 -4.9 heat shock protein 90 compare
PS417_28510 -1.0 -2.6 chromosome partitioning protein compare
PS417_24840 -1.0 -1.0 hypothetical protein compare
PS417_20700 -1.0 -4.8 cbb3-type cytochrome c oxidase subunit I compare
PS417_22040 -1.0 -2.2 GNAT family acetyltransferase compare
PS417_27595 -1.0 -1.7 recombinase XerC compare
PS417_04960 -1.0 -1.1 hypothetical protein compare
PS417_23915 -1.0 -3.4 pantoate--beta-alanine ligase compare
PS417_12660 -1.0 -1.3 hypothetical protein compare
PS417_23820 -1.0 -2.5 hypothetical protein compare
PS417_08090 -1.0 -0.6 3-oxoacyl-ACP reductase compare
PS417_22795 -1.0 -1.3 exclusion suppressor FxsA compare
PS417_20880 -1.0 -1.4 GntR family transcriptional regulator compare
PS417_28080 -1.0 -5.6 phosphate ABC transporter permease compare
PS417_26990 -1.0 -0.6 RNA pyrophosphohydrolase compare


Specific Phenotypes

For 1 genes in this experiment

For motility_chemotaxis Method=Plug_approach; Chemical=casamino acids; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 in Pseudomonas simiae WCS417

For motility_chemotaxis Method=Plug_approach; Chemical=casamino acids; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 across organisms