| | gene | name | fitness | t score | description | |
|---|
| b1830 | prc | +2.3 | 13.3 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b0033 | carB | +1.6 | 14.3 | carbamoyl-phosphate synthase large subunit (NCBI) | compare |
| b4313 | fimE | +1.5 | 9.1 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b4503 | yafF | +1.4 | 1.0 | no description | compare |
| b3443 | yrhA | +1.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b3979 | thrT | +1.4 | 0.7 | tRNA-Thr (NCBI) | compare |
| b1984 | asnW | +1.4 | 2.1 | tRNA-Asn (NCBI) | compare |
| b2741 | rpoS | +1.4 | 9.0 | RNA polymerase sigma factor (NCBI) | compare |
| b0032 | carA | +1.3 | 6.5 | carbamoyl-phosphate synthase small subunit (NCBI) | compare |
| b2110 | yehC | +1.2 | 2.0 | predicted periplasmic pilin chaperone (NCBI) | compare |
| b2282 | nuoH | +1.2 | 4.0 | NADH dehydrogenase subunit H (NCBI) | compare |
| b3163 | nlpI | +1.1 | 4.3 | hypothetical protein (NCBI) | compare |
| b1362 | rzpR | +1.1 | 2.8 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b1346 | ydaQ | +1.1 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1070 | flgN | +1.1 | 2.0 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b1557 | cspB | +1.1 | 2.7 | Qin prophage; cold shock protein (NCBI) | compare |
| b1524 | yneH | +1.1 | 1.3 | predicted glutaminase (NCBI) | compare |
| b2287 | nuoB | +1.1 | 4.5 | NADH dehydrogenase subunit B (NCBI) | compare |
| b2284 | nuoF | +1.1 | 5.3 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b1865 | nudB | +1.1 | 1.6 | dATP pyrophosphohydrolase (NCBI) | compare |
| b1942 | fliJ | +1.0 | 1.2 | flagellar biosynthesis chaperone (NCBI) | compare |
| b2111 | yehD | +1.0 | 3.5 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1108 | ycfP | +1.0 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b3250 | mreC | +0.9 | 1.3 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b2531 | iscR | +0.9 | 2.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2279 | nuoK | +0.9 | 1.9 | NADH dehydrogenase subunit K (NCBI) | compare |
| b1685 | ydiH | +0.9 | 1.6 | predicted protein (RefSeq) | compare |
| b2283 | nuoG | +0.9 | 5.8 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b4402 | yjjY | +0.9 | 1.0 | hypothetical protein (NCBI) | compare |
| b2939 | yqgB | +0.9 | 1.5 | predicted protein (RefSeq) | compare |
| b3199 | yrbK | +0.9 | 1.8 | hypothetical protein (NCBI) | compare |
| b1831 | proQ | +0.9 | 2.9 | putative solute/DNA competence effector (NCBI) | compare |
| b0934 | ycbM | +0.9 | 1.6 | putative transport system permease protein (VIMSS) | compare |
| b4592 | yccB | +0.8 | 2.1 | hypothetical protein (RefSeq) | compare |
| b2276 | nuoN | +0.8 | 4.3 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b1357 | ydaS | +0.8 | 1.4 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4647 | mokA | +0.8 | 0.7 | no description | compare |
| b3405 | ompR | +0.8 | 3.9 | osmolarity response regulator (NCBI) | compare |
| b2277 | nuoM | +0.8 | 4.9 | NADH dehydrogenase subunit M (NCBI) | compare |
| b2516 | yfgA | +0.8 | 4.0 | hypothetical protein (NCBI) | compare |
| b3672 | ivbL | +0.8 | 2.1 | ilvB operon leader peptide (NCBI) | compare |
| b0724 | sdhB | +0.8 | 3.8 | succinate dehydrogenase, FeS subunit (NCBI) | compare |
| b2911 | ssrS | +0.8 | 1.7 | 6S regulatory RNA (NCBI) | compare |
| b2281 | nuoI | +0.8 | 3.3 | NADH dehydrogenase subunit I (NCBI) | compare |
| b4699 | fnrS | +0.8 | 0.6 | FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation (RefSeq) | compare |
| b2642 | yfjW | +0.8 | 0.7 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b3620 | rfaF | +0.8 | 3.9 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b1259 | yciG | +0.8 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b3935 | priA | +0.8 | 1.9 | primosome assembly protein PriA (NCBI) | compare |
| b3889 | yiiE | +0.7 | 2.1 | predicted transcriptional regulator (RefSeq) | compare |
| b2280 | nuoJ | +0.7 | 3.4 | NADH dehydrogenase subunit J (NCBI) | compare |
| b0142 | folK | +0.7 | 0.4 | 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) | compare |
| b2278 | nuoL | +0.7 | 5.2 | NADH dehydrogenase subunit L (NCBI) | compare |
| b1823 | cspC | +0.7 | 1.1 | stress protein, member of the CspA-family (NCBI) | compare |
| b4201 | priB | +0.7 | 1.4 | primosomal replication protein N (NCBI) | compare |
| b4631 | ykgQ | +0.7 | 1.7 | no description | compare |
| b0721 | sdhC | +0.7 | 3.0 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b1862 | yebB | +0.7 | 2.4 | orf, hypothetical protein (VIMSS) | compare |
| b2897 | ygfY | +0.7 | 3.7 | hypothetical protein (NCBI) | compare |
| b0049 | apaH | +0.7 | 3.1 | diadenosinetetraphosphatase (NCBI) | compare |
| b0564 | appY | +0.7 | 0.8 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b2082 | ogrK | +0.7 | 1.6 | DNA-binding transcriptional regulator prophage P2 remnant (NCBI) | compare |
| b0722 | sdhD | +0.7 | 2.4 | succinate dehydrogenase cytochrome b556 small membrane subunit (NCBI) | compare |
| b0014 | dnaK | +0.7 | 0.9 | molecular chaperone DnaK (NCBI) | compare |
| b1591 | b1591 | +0.7 | 1.7 | putative oxidoreductase component (VIMSS) | compare |
| b3619 | rfaD | +0.7 | 2.8 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b4406 | yaeP | +0.7 | 2.5 | hypothetical protein (NCBI) | compare |
| b4694 | yagP | +0.7 | 2.5 | no description | compare |
| b0125 | hpt | +0.7 | 2.9 | hypoxanthine phosphoribosyltransferase (VIMSS) | compare |
| b2477 | nlpB | +0.7 | 2.2 | lipoprotein-34 (VIMSS) | compare |
| b4520 | ymgF | +0.7 | 1.0 | hypothetical protein (NCBI) | compare |
| b0723 | sdhA | +0.6 | 4.8 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |
| b4493 | gapC | +0.6 | 1.5 | no description | compare |
| b3621 | rfaC | +0.6 | 3.4 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b4527 | b1354 | +0.6 | 2.3 | orf, hypothetical protein (VIMSS) | compare |
| b1724 | ydiZ | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b0222 | lpcA | +0.6 | 1.7 | phosphoheptose isomerase (NCBI) | compare |
| b2285 | nuoE | +0.6 | 2.2 | NADH dehydrogenase subunit E (NCBI) | compare |
| b1251 | yciI | +0.6 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b2446 | yffO | +0.6 | 2.0 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b1446 | ydcY | +0.6 | 1.3 | hypothetical protein (NCBI) | compare |
| b2829 | ptsP | +0.6 | 4.9 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1279 | yciS | +0.6 | 0.8 | conserved inner membrane protein (NCBI) | compare |
| b1151 | ymfO | +0.6 | 1.9 | e14 prophage; conserved protein (RefSeq) | compare |
| b2738 | ygbL | +0.6 | 2.6 | hypothetical protein (NCBI) | compare |
| b3649 | rpoZ | +0.6 | 1.7 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b4127 | yjdJ | +0.6 | 3.6 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b4397 | creA | +0.6 | 2.6 | hypothetical protein (NCBI) | compare |
| b4071 | nrfB | +0.6 | 1.7 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b4451 | ryhB | +0.6 | 1.5 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b2085 | b2085 | +0.6 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1607 | ydgC | +0.6 | 1.1 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b4431 | rprA | +0.6 | 1.4 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b1778 | yeaA | +0.6 | 1.8 | methionine sulfoxide reductase B (NCBI) | compare |
| b1400 | paaY | +0.6 | 1.5 | predicted hexapeptide repeat acetyltransferase (NCBI) | compare |
| b2346 | vacJ | +0.6 | 3.8 | predicted lipoprotein (NCBI) | compare |
| b3764 | yifE | +0.5 | 3.2 | hypothetical protein (NCBI) | compare |
| b1686 | ydiI | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b2309 | hisJ | +0.5 | 1.9 | histidine/lysine/arginine/ornithine transporter subunit (NCBI) | compare |
| b2286 | nuoC | +0.5 | 2.8 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b3622 | rfaL | +0.5 | 2.0 | O-antigen ligase (NCBI) | compare |
| b4363 | yjjB | +0.5 | 1.7 | conserved inner membrane protein (RefSeq) | compare |
| b4172 | hfq | +0.5 | 0.7 | RNA-binding protein Hfq (NCBI) | compare |
| b4533 | ynfO | +0.5 | 1.6 | Qin prophage; predicted protein (NCBI) | compare |
| b0604 | dsbG | +0.5 | 3.6 | thiol:disulfide interchange protein (VIMSS) | compare |
| b4505 | insX | +0.5 | 1.2 | predicted IS protein (RefSeq) | compare |
| b0217 | yafT | +0.5 | 2.5 | predicted aminopeptidase (NCBI) | compare |
| b2236 | yfaE | +0.5 | 1.6 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b3761 | trpT | +0.5 | 1.1 | tRNA-Trp (NCBI) | compare |
| b4506 | ykgO | +0.5 | 2.5 | rpmJ (L36) paralog (NCBI) | compare |
| b0143 | pcnB | +0.5 | 2.8 | poly(A) polymerase I (VIMSS) | compare |
| b3261 | fis | +0.5 | 1.3 | DNA-binding protein Fis (NCBI) | compare |
| b4552 | yrhC | +0.5 | 0.6 | no description | compare |
| b0784 | moaD | +0.5 | 0.7 | molybdopterin synthase, small subunit (NCBI) | compare |
| b3183 | obgE | +0.5 | 0.6 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b4679 | yohP | +0.5 | 1.2 | expressed protein (RefSeq) | compare |
| b1566 | flxA | +0.5 | 1.7 | Qin prophage; predicted protein (NCBI) | compare |
| b2948 | yqgE | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3890 | yiiF | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2501 | ppk | +0.5 | 3.5 | polyphosphate kinase (NCBI) | compare |
| b3181 | greA | +0.5 | 2.1 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1085 | b1085 | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1742 | b1742 | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b1177 | ycgJ | +0.5 | 3.1 | hypothetical protein (NCBI) | compare |
| b1195 | ymgE | +0.5 | 1.4 | predicted inner membrane protein (NCBI) | compare |
| b3781 | trxA | +0.5 | 1.9 | thioredoxin 1 (VIMSS) | compare |
| b4633 | xisD | +0.5 | 2.3 | no description | compare |
| b4515 | ybgT | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b3643 | rph | +0.5 | 2.6 | ribonuclease PH (NCBI) | compare |
| b1647 | ydhF | +0.5 | 1.3 | predicted oxidoreductase (NCBI) | compare |
| b3150 | yraP | +0.5 | 2.9 | hypothetical protein (NCBI) | compare |
| b3052 | rfaE | +0.5 | 2.3 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b0238 | gpt | +0.5 | 1.2 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b4587 | insN | +0.5 | 3.1 | no description | compare |
| b4649 | ysaD | +0.5 | 2.2 | no description | compare |
| b4360 | yjjA | +0.5 | 2.2 | putative glycoprotein/receptor (VIMSS) | compare |
| b2742 | nlpD | +0.5 | 2.8 | predicted outer membrane lipoprotein (NCBI) | compare |
| b1150 | ymfR | +0.5 | 0.6 | e14 prophage; predicted protein (NCBI) | compare |
| b1573 | ydfC | +0.5 | 0.3 | Qin prophage; predicted protein (RefSeq) | compare |
| b1384 | feaR | +0.5 | 2.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3467 | yhhM | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b2659 | b2659 | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4570 | lomR | +0.5 | 0.7 | no description | compare |
| b2199 | ccmC | +0.5 | 1.6 | heme exporter subunit (NCBI) | compare |
| b1572 | ydfB | +0.5 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1842 | holE | +0.4 | 1.3 | DNA polymerase III, theta subunit (NCBI) | compare |
| b0583 | entD | +0.4 | 1.8 | phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex (NCBI) | compare |
| b1044 | ymdA | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b1360 | ydaV | +0.4 | 0.6 | Rac prophage; predicted DNA replication protein (NCBI) | compare |
| b1139 | lit | +0.4 | 2.1 | e14 prophage; cell death peptidase, inhibitor of T4 late gene expression (NCBI) | compare |
| b3341 | rpsG | +0.4 | 0.4 | 30S ribosomal protein S7 (NCBI) | compare |
| b1183 | umuD | +0.4 | 1.1 | DNA polymerase V, subunit D (NCBI) | compare |
| b0751 | pnuC | +0.4 | 2.2 | predicted nicotinamide mononucleotide transporter (NCBI) | compare |
| b4648 | ysaC | +0.4 | 1.8 | no description | compare |
| b3102 | yqjG | +0.4 | 1.9 | predicted S-transferase (NCBI) | compare |
| b1155 | ymfS | +0.4 | 1.6 | e14 prophage; predicted protein (NCBI) | compare |
| b0380 | b0380 | +0.4 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b2512 | yfgL | +0.4 | 2.3 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b1708 | nlpC | +0.4 | 1.9 | predicted lipoprotein (NCBI) | compare |
| b3785 | wzzE | +0.4 | 3.3 | putative transport protein (VIMSS) | compare |
| b2638 | yfjU | +0.4 | 1.3 | CP4-57 prophage; conserved protein (RefSeq) | compare |
| b3042 | b3042 | +0.4 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1527 | yneK | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b2564 | pdxJ | +0.4 | 1.4 | pyridoxal phosphate biosynthetic protein (NCBI) | compare |
| b1075 | flgD | +0.4 | 1.3 | flagellar basal body rod modification protein D (NCBI) | compare |
| b4571 | wbbL | +0.4 | 1.6 | no description | compare |
| b4702 | mgtL | +0.4 | 1.1 | regulatory leader peptide for mgtA (NCBI) | compare |
| b3021 | ygiT | +0.4 | 1.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1839 | yebY | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b1612 | fumA | +0.4 | 2.1 | fumarate hydratase (fumarase A), aerobic Class I (NCBI) | compare |
| b3867 | hemN | +0.4 | 3.3 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b1298 | ycjL | +0.4 | 2.1 | probable amidotransferase subunit (VIMSS) | compare |
| b2876 | b2876 | +0.4 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1828 | b1828 | +0.4 | 2.4 | putative transport protein (VIMSS) | compare |
| b4293 | fecI | +0.4 | 1.6 | KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) | compare |
| b2096 | gatY | +0.4 | 1.6 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b4589 | ylcI | +0.4 | 0.7 | hypothetical protein (RefSeq) | compare |
| b1433 | b1433 | +0.4 | 2.3 | putative membrane transport protein (VIMSS) | compare |
| b1804 | rnd | +0.4 | 2.0 | ribonuclease D (NCBI) | compare |
| b1190 | dadX | +0.4 | 2.1 | alanine racemase (NCBI) | compare |
| b3716 | yieI | +0.4 | 2.7 | predicted inner membrane protein (NCBI) | compare |
| b0364 | yaiS | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b3753 | rbsR | +0.4 | 3.0 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2299 | yfcD | +0.4 | 1.4 | predicted NUDIX hydrolase (NCBI) | compare |
| b3437 | gntK | +0.4 | 1.7 | gluconokinase 2, thermoresistant (VIMSS) | compare |
| b0502 | ylbG | +0.4 | 0.7 | no description | compare |
| b3875 | ompL | +0.4 | 1.1 | predicted outer membrane porin L (NCBI) | compare |
| b3206 | npr | +0.4 | 1.7 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b0726 | sucA | +0.4 | 1.8 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b4608 | ryfC | +0.4 | 1.4 | Novel sRNA, function unknown (RefSeq) | compare |
| b1583 | ynfB | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b0379 | yaiY | +0.4 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b2372 | yfdV | +0.4 | 2.1 | predicted transporter (NCBI) | compare |
| b1943 | fliK | +0.4 | 1.9 | flagellar hook-length control protein (NCBI) | compare |
| b2960 | yggH | +0.4 | 2.5 | tRNA(m7G46)-methyltransferase (NCBI) | compare |
| b0278 | yagL | +0.4 | 2.5 | CP4-6 prophage; DNA-binding protein (NCBI) | compare |
| b3404 | envZ | +0.4 | 2.9 | osmolarity sensor protein (NCBI) | compare |
| b2808 | gcvA | +0.4 | 1.7 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3811 | xerC | +0.4 | 0.6 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b4415 | hokE | +0.4 | 1.6 | toxic polypeptide, small (NCBI) | compare |