| | gene | name | fitness | t score | description | |
|---|
| b4313 | fimE | +1.7 | 11.5 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b1830 | prc | +1.7 | 9.4 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b1192 | ldcA | +1.5 | 8.7 | L,D-carboxypeptidase A (NCBI) | compare |
| b1361 | ydaW | +1.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2531 | iscR | +1.2 | 2.3 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3236 | mdh | +1.2 | 9.9 | malate dehydrogenase (NCBI) | compare |
| b1936 | intG | +1.2 | 1.7 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b4570 | lomR | +1.2 | 1.8 | no description | compare |
| b1524 | yneH | +1.1 | 1.6 | predicted glutaminase (NCBI) | compare |
| b0740 | tolB | +1.1 | 5.7 | translocation protein TolB precursor (NCBI) | compare |
| b1332 | ynaJ | +1.0 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b0033 | carB | +1.0 | 9.2 | carbamoyl-phosphate synthase large subunit (NCBI) | compare |
| b1058 | yceO | +1.0 | 0.5 | hypothetical protein (NCBI) | compare |
| b2829 | ptsP | +1.0 | 8.0 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2830 | nudH | +1.0 | 1.6 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b3261 | fis | +1.0 | 2.8 | DNA-binding protein Fis (NCBI) | compare |
| b2284 | nuoF | +1.0 | 5.3 | NADH:ubiquinone oxidoreductase, chain F (NCBI) | compare |
| b3500 | gor | +1.0 | 1.6 | glutathione reductase (NCBI) | compare |
| b2741 | rpoS | +0.9 | 4.5 | RNA polymerase sigma factor (NCBI) | compare |
| b0723 | sdhA | +0.9 | 7.5 | succinate dehydrogenase flavoprotein subunit (NCBI) | compare |
| b1205 | ychH | +0.9 | 3.4 | predicted inner membrane protein (NCBI) | compare |
| b2285 | nuoE | +0.9 | 3.0 | NADH dehydrogenase subunit E (NCBI) | compare |
| b2897 | ygfY | +0.9 | 5.3 | hypothetical protein (NCBI) | compare |
| b2282 | nuoH | +0.9 | 3.7 | NADH dehydrogenase subunit H (NCBI) | compare |
| b3387 | dam | +0.9 | 7.7 | DNA adenine methylase (NCBI) | compare |
| b3163 | nlpI | +0.9 | 4.5 | hypothetical protein (NCBI) | compare |
| b3026 | qseC | +0.9 | 4.2 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b1727 | yniC | +0.9 | 3.3 | predicted hydrolase (NCBI) | compare |
| b3199 | yrbK | +0.9 | 2.1 | hypothetical protein (NCBI) | compare |
| b3627 | rfaI | +0.9 | 6.8 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b0722 | sdhD | +0.9 | 3.5 | succinate dehydrogenase cytochrome b556 small membrane subunit (NCBI) | compare |
| b2287 | nuoB | +0.9 | 3.5 | NADH dehydrogenase subunit B (NCBI) | compare |
| b2904 | gcvH | +0.8 | 3.6 | glycine cleavage system protein H (NCBI) | compare |
| b1362 | rzpR | +0.8 | 2.0 | putative Rac prophage endopeptidase (VIMSS) | compare |
| b1607 | ydgC | +0.8 | 1.9 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b0739 | tolA | +0.8 | 3.3 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b1984 | asnW | +0.8 | 1.3 | tRNA-Asn (NCBI) | compare |
| b1831 | proQ | +0.8 | 4.1 | putative solute/DNA competence effector (NCBI) | compare |
| b0720 | gltA | +0.8 | 5.0 | citrate synthase (NCBI) | compare |
| b0721 | sdhC | +0.8 | 3.4 | succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) | compare |
| b0724 | sdhB | +0.8 | 4.3 | succinate dehydrogenase, FeS subunit (NCBI) | compare |
| b1476 | fdnI | +0.8 | 1.1 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b0738 | tolR | +0.8 | 2.8 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0049 | apaH | +0.8 | 2.9 | diadenosinetetraphosphatase (NCBI) | compare |
| b2283 | nuoG | +0.8 | 5.1 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b2288 | nuoA | +0.8 | 2.6 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b1685 | ydiH | +0.8 | 1.5 | predicted protein (RefSeq) | compare |
| b0032 | carA | +0.8 | 4.6 | carbamoyl-phosphate synthase small subunit (NCBI) | compare |
| b3628 | rfaB | +0.8 | 6.0 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b2276 | nuoN | +0.8 | 3.6 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b0741 | pal | +0.7 | 2.9 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b3405 | ompR | +0.7 | 3.6 | osmolarity response regulator (NCBI) | compare |
| b4413 | sokC | +0.7 | 1.7 | regulatory antisense RNA (NCBI) | compare |
| b2278 | nuoL | +0.7 | 5.0 | NADH dehydrogenase subunit L (NCBI) | compare |
| b1954 | dsrA | +0.7 | 2.5 | regulatory antisense RNA (NCBI) | compare |
| b1418 | cybB | +0.7 | 2.4 | cytochrome b(561) (VIMSS) | compare |
| b2516 | yfgA | +0.7 | 3.9 | hypothetical protein (NCBI) | compare |
| b2281 | nuoI | +0.7 | 2.9 | NADH dehydrogenase subunit I (NCBI) | compare |
| b1357 | ydaS | +0.7 | 1.5 | Rac prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0737 | tolQ | +0.7 | 2.2 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b2939 | yqgB | +0.7 | 1.7 | predicted protein (RefSeq) | compare |
| b1085 | b1085 | +0.7 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b2259 | pmrD | +0.7 | 1.1 | polymyxin resistance protein B (VIMSS) | compare |
| b4595 | yciY | +0.7 | 2.3 | hypothetical protein (RefSeq) | compare |
| b3192 | yrbC | +0.7 | 5.6 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b4397 | creA | +0.7 | 3.5 | hypothetical protein (NCBI) | compare |
| b3195 | yrbF | +0.7 | 5.2 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b1591 | b1591 | +0.7 | 1.6 | putative oxidoreductase component (VIMSS) | compare |
| b0580 | ybdJ | +0.7 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b2356 | yfdM | +0.6 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1814 | sdaA | +0.6 | 2.2 | L-serine deaminase I (NCBI) | compare |
| b1448 | yncA | +0.6 | 0.9 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b4631 | ykgQ | +0.6 | 1.8 | no description | compare |
| b1777 | b1777 | +0.6 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b4687 | shoB | +0.6 | 3.9 | toxic membrane protein (RefSeq) | compare |
| b2346 | vacJ | +0.6 | 4.1 | predicted lipoprotein (NCBI) | compare |
| b4551 | yheV | +0.6 | 2.6 | hypothetical protein (NCBI) | compare |
| b1557 | cspB | +0.6 | 1.6 | Qin prophage; cold shock protein (NCBI) | compare |
| b3206 | npr | +0.6 | 4.1 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b1183 | umuD | +0.6 | 1.0 | DNA polymerase V, subunit D (NCBI) | compare |
| b3193 | yrbD | +0.6 | 4.7 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3194 | yrbE | +0.6 | 4.6 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3119 | tdcR | +0.6 | 2.3 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b0728 | sucC | +0.6 | 3.8 | succinyl-CoA synthetase subunit beta (NCBI) | compare |
| b0294 | ykgK | +0.6 | 2.3 | predicted regulator (NCBI) | compare |
| b1453 | ansP | +0.6 | 2.5 | L-asparagine permease (VIMSS) | compare |
| b1148 | ymfM | +0.6 | 1.9 | e14 prophage; predicted protein (NCBI) | compare |
| b1384 | feaR | +0.5 | 3.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1753 | ynjA | +0.5 | 2.1 | hypothetical protein (NCBI) | compare |
| b2286 | nuoC | +0.5 | 2.5 | NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) | compare |
| b2279 | nuoK | +0.5 | 1.2 | NADH dehydrogenase subunit K (NCBI) | compare |
| b1793 | yoaF | +0.5 | 2.0 | conserved outer membrane protein (NCBI) | compare |
| b1620 | malI | +0.5 | 1.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3281 | aroE | +0.5 | 4.7 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b1874 | cutC | +0.5 | 1.3 | copper homeostasis protein (NCBI) | compare |
| b1231 | tyrT | +0.5 | 0.9 | tRNA-Tyr (NCBI) | compare |
| b4592 | yccB | +0.5 | 1.6 | hypothetical protein (RefSeq) | compare |
| b1221 | narL | +0.5 | 3.1 | DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) (NCBI) | compare |
| b1729 | ydjN | +0.5 | 2.5 | predicted transporter (NCBI) | compare |
| b1572 | ydfB | +0.5 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b3844 | fre | +0.5 | 3.0 | NAD(P)H-flavin reductase (NCBI) | compare |
| b1756 | ynjD | +0.5 | 2.5 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3260 | dusB | +0.5 | 2.1 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b3643 | rph | +0.5 | 3.3 | ribonuclease PH (NCBI) | compare |
| b3780 | rhlB | +0.5 | 4.1 | ATP-dependent RNA helicase (NCBI) | compare |
| b0729 | sucD | +0.5 | 2.5 | succinyl-CoA synthetase subunit alpha (NCBI) | compare |
| b3191 | yrbB | +0.5 | 3.8 | orf, hypothetical protein (VIMSS) | compare |
| b0632 | dacA | +0.5 | 3.5 | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) | compare |
| b3630 | rfaP | +0.5 | 4.0 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1300 | puuC | +0.5 | 1.3 | gamma-Glu-gamma-aminobutyraldehyde dehydrogenase, NAD(P)H-dependent (NCBI) | compare |
| b3181 | greA | +0.5 | 3.2 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b2280 | nuoJ | +0.5 | 2.5 | NADH dehydrogenase subunit J (NCBI) | compare |
| b0249 | ykfF | +0.5 | 1.7 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1108 | ycfP | +0.5 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1818 | manY | +0.5 | 1.2 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b0145 | dksA | +0.5 | 1.3 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b3198 | kdsC | +0.5 | 1.5 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b2071 | yegJ | +0.5 | 1.3 | hypothetical protein (NCBI) | compare |
| b2501 | ppk | +0.5 | 3.4 | polyphosphate kinase (NCBI) | compare |
| b1227 | narI | +0.5 | 2.5 | nitrate reductase 1, gamma (cytochrome b(NR)) subunit (NCBI) | compare |
| b3632 | rfaQ | +0.5 | 4.3 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0471 | ybaB | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b0386 | proC | +0.5 | 2.3 | pyrroline-5-carboxylate reductase (NCBI) | compare |
| b1446 | ydcY | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b0436 | tig | +0.5 | 3.0 | trigger factor (NCBI) | compare |
| b2859 | ygeO | +0.5 | 1.1 | hypothetical protein (RefSeq) | compare |
| b1282 | yciH | +0.5 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1330 | ynaI | +0.5 | 2.1 | conserved inner membrane protein (NCBI) | compare |
| b1491 | yddW | +0.5 | 2.6 | predicted liprotein (NCBI) | compare |
| b0560 | nohB | +0.5 | 1.7 | DLP12 prophage; DNA packaging protein (NCBI) | compare |
| b0857 | potI | +0.4 | 1.7 | putrescine transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1438 | ydcQ | +0.4 | 1.2 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1550 | b1550 | +0.4 | 0.4 | orf, hypothetical protein (VIMSS) | compare |
| b0865 | ybjP | +0.4 | 1.4 | predicted lipoprotein (NCBI) | compare |
| b4152 | frdC | +0.4 | 2.6 | fumarate reductase subunit C (NCBI) | compare |
| b1682 | sufC | +0.4 | 2.8 | cysteine desulfurase ATPase component (NCBI) | compare |
| b3404 | envZ | +0.4 | 3.5 | osmolarity sensor protein (NCBI) | compare |
| b0726 | sucA | +0.4 | 1.9 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b2277 | nuoM | +0.4 | 2.4 | NADH dehydrogenase subunit M (NCBI) | compare |
| b4203 | rplI | +0.4 | 1.8 | 50S ribosomal protein L9 (NCBI) | compare |
| b4153 | frdB | +0.4 | 2.8 | fumarate reductase (anaerobic), Fe-S subunit (NCBI) | compare |
| b3784 | rfe | +0.4 | 3.5 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b2684 | mprA | +0.4 | 2.1 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b3842 | rfaH | +0.4 | 2.3 | transcriptional activator RfaH (NCBI) | compare |
| b1698 | ydiR | +0.4 | 1.7 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b3890 | yiiF | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b2477 | nlpB | +0.4 | 1.4 | lipoprotein-34 (VIMSS) | compare |
| b0945 | pyrD | +0.4 | 3.3 | dihydroorotate dehydrogenase (NCBI) | compare |
| b4578 | insP | +0.4 | 1.8 | no description | compare |
| b2085 | b2085 | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3631 | rfaG | +0.4 | 3.6 | glucosyltransferase I (NCBI) | compare |
| b2597 | yfiA | +0.4 | 1.2 | cold shock protein associated with 30S ribosomal subunit (NCBI) | compare |
| b1667 | ydhR | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b2564 | pdxJ | +0.4 | 1.6 | pyridoxal phosphate biosynthetic protein (NCBI) | compare |
| b2005 | yeeV | +0.4 | 1.8 | CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system (NCBI) | compare |
| b1462 | b1462 | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b3437 | gntK | +0.4 | 2.4 | gluconokinase 2, thermoresistant (VIMSS) | compare |
| b4057 | yjbR | +0.4 | 2.1 | hypothetical protein (NCBI) | compare |
| b0183 | rnhB | +0.4 | 1.8 | ribonuclease HII (NCBI) | compare |
| b1865 | nudB | +0.4 | 0.9 | dATP pyrophosphohydrolase (NCBI) | compare |
| b1726 | yniB | +0.4 | 1.1 | predicted inner membrane protein (NCBI) | compare |
| b3620 | rfaF | +0.4 | 2.1 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b1334 | fnr | +0.4 | 1.6 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b4481 | rffT | +0.4 | 2.4 | 4-alpha-L-fucosyltransferase (NCBI) | compare |
| b1382 | ynbE | +0.4 | 0.8 | predicted lipoprotein (NCBI) | compare |
| b2792 | yqcC | +0.4 | 2.0 | hypothetical protein (NCBI) | compare |
| b1853 | yebK | +0.4 | 1.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1970 | yedX | +0.4 | 1.6 | hypothetical protein (NCBI) | compare |
| b2808 | gcvA | +0.4 | 2.0 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2399 | yfeD | +0.4 | 2.2 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b4694 | yagP | +0.4 | 2.0 | no description | compare |
| b1593 | b1593 | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b4620 | yjbT | +0.4 | 2.1 | hypothetical protein, no homologs (RefSeq) | compare |
| b3867 | hemN | +0.4 | 3.2 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b0685 | ybfE | +0.4 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b3790 | rffC | +0.4 | 2.1 | TDP-fucosamine acetyltransferase (RefSeq) | compare |
| b2579 | yfiD | +0.4 | 0.7 | pyruvate formate lyase subunit (NCBI) | compare |
| b2145 | yeiS | +0.4 | 1.2 | predicted inner membrane protein (NCBI) | compare |
| b2768 | ygcP | +0.4 | 1.3 | predicted anti-terminator regulatory protein (NCBI) | compare |
| b2419 | yfeK | +0.4 | 0.9 | hypothetical protein (NCBI) | compare |
| b1412 | azoR | +0.4 | 1.5 | acyl carrier protein phosphodiesterase (NCBI) | compare |
| b2215 | ompC | +0.4 | 2.4 | outer membrane porin protein C (NCBI) | compare |
| b4589 | ylcI | +0.4 | 1.4 | hypothetical protein (RefSeq) | compare |
| b2424 | cysU | +0.4 | 0.9 | sulfate/thiosulfate transporter subunit (NCBI) | compare |
| b0226 | dinJ | +0.4 | 2.2 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b3622 | rfaL | +0.4 | 1.3 | O-antigen ligase (NCBI) | compare |
| b0889 | lrp | +0.4 | 1.6 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b3642 | pyrE | +0.4 | 1.6 | orotate phosphoribosyltransferase (NCBI) | compare |
| b3448 | yhhA | +0.4 | 1.7 | hypothetical protein (NCBI) | compare |
| b2912 | ygfA | +0.4 | 1.4 | putative ligase (VIMSS) | compare |
| b1153 | ymfQ | +0.4 | 1.0 | e14 prophage; conserved protein (NCBI) | compare |
| b1639 | ydhA | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1559 | b1559 | +0.4 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1083 | flgL | +0.4 | 1.5 | flagellar hook-associated protein L (NCBI) | compare |
| b1251 | yciI | +0.4 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b0354 | yaiL | +0.4 | 2.2 | nucleoprotein/polynucleotide-associated enzyme (VIMSS) | compare |
| b2136 | yohD | +0.4 | 0.5 | orf, hypothetical protein (VIMSS) | compare |
| b0357 | yaiN | +0.3 | 0.8 | putative alpha helix chain (VIMSS) | compare |
| b1175 | minD | +0.3 | 1.9 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b4458 | oxyS | +0.3 | 0.7 | global regulatory RNA (NCBI) | compare |