| | gene | name | fitness | t score | description | |
|---|
| b4313 | fimE | +2.8 | 18.8 | tyrosine recombinase/inversion of on/off regulator of fimA (NCBI) | compare |
| b0462 | acrB | +1.8 | 16.1 | multidrug efflux system protein (NCBI) | compare |
| b0463 | acrA | +1.8 | 13.2 | multidrug efflux system (NCBI) | compare |
| b3163 | nlpI | +1.5 | 7.1 | hypothetical protein (NCBI) | compare |
| b2531 | iscR | +1.5 | 1.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4552 | yrhC | +1.4 | 1.9 | no description | compare |
| b4396 | rob | +1.3 | 9.5 | DNA-binding transcriptional activator (NCBI) | compare |
| b1830 | prc | +1.3 | 6.7 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b1279 | yciS | +1.2 | 1.8 | conserved inner membrane protein (NCBI) | compare |
| b1824 | yobF | +1.1 | 4.4 | hypothetical protein (NCBI) | compare |
| b4655 | ythA | +1.1 | 2.4 | expressed protein (RefSeq) | compare |
| b1129 | phoQ | +1.1 | 2.7 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b0018 | mokC | +1.1 | 2.4 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b1563 | relE | +1.1 | 3.4 | Qin prophage; toxin of the RelE-RelB toxin-antitoxin system (NCBI) | compare |
| b2625 | yfjI | +1.0 | 2.3 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b1823 | cspC | +1.0 | 2.1 | stress protein, member of the CspA-family (NCBI) | compare |
| b1332 | ynaJ | +0.9 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b1151 | ymfO | +0.9 | 3.6 | e14 prophage; conserved protein (RefSeq) | compare |
| b4480 | hdfR | +0.9 | 5.5 | transcriptional regulator HdfR (NCBI) | compare |
| b2017 | yefM | +0.9 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b1831 | proQ | +0.8 | 3.0 | putative solute/DNA competence effector (NCBI) | compare |
| b3035 | tolC | +0.8 | 5.0 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b0303 | ykgI | +0.7 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b1727 | yniC | +0.7 | 2.2 | predicted hydrolase (NCBI) | compare |
| b3147 | yraM | +0.7 | 5.8 | hypothetical protein (NCBI) | compare |
| b4163 | glyV | +0.7 | 1.3 | tRNA-Gly (NCBI) | compare |
| b3396 | mrcA | +0.7 | 6.3 | peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) | compare |
| b2804 | fucU | +0.7 | 2.9 | L-fucose mutarotase (NCBI) | compare |
| b1954 | dsrA | +0.7 | 2.2 | regulatory antisense RNA (NCBI) | compare |
| b3706 | trmE | +0.6 | 3.0 | tRNA modification GTPase (NCBI) | compare |
| b1754 | b1754 | +0.6 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b3206 | npr | +0.6 | 2.8 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b3644 | yicC | +0.6 | 4.3 | hypothetical protein (NCBI) | compare |
| b1643 | ydhI | +0.6 | 2.9 | predicted inner membrane protein (NCBI) | compare |
| b1959 | yedA | +0.6 | 3.3 | predicted inner membrane protein (NCBI) | compare |
| b0990 | cspG | +0.6 | 0.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2894 | xerD | +0.6 | 0.5 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b4406 | yaeP | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b0377 | sbmA | +0.6 | 5.0 | predicted transporter (NCBI) | compare |
| b0249 | ykfF | +0.6 | 2.0 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1348 | lar | +0.6 | 1.2 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b4675 | yoaJ | +0.6 | 2.6 | expressed protein (RefSeq) | compare |
| b3761 | trpT | +0.6 | 1.3 | tRNA-Trp (NCBI) | compare |
| b2741 | rpoS | +0.6 | 2.6 | RNA polymerase sigma factor (NCBI) | compare |
| b2579 | yfiD | +0.6 | 1.5 | pyruvate formate lyase subunit (NCBI) | compare |
| b1708 | nlpC | +0.6 | 3.2 | predicted lipoprotein (NCBI) | compare |
| b1572 | ydfB | +0.5 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3026 | qseC | +0.5 | 2.8 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b4151 | frdD | +0.5 | 2.0 | fumarate reductase subunit D (NCBI) | compare |
| b4535 | yniD | +0.5 | 1.0 | predicted protein (RefSeq) | compare |
| b4246 | pyrL | +0.5 | 2.0 | pyrBI operon leader peptide (NCBI) | compare |
| b3623 | rfaK | +0.5 | 1.4 | lipopolysaccharide core biosynthesis (NCBI) | compare |
| b1689 | b1689 | +0.5 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3764 | yifE | +0.5 | 2.0 | hypothetical protein (NCBI) | compare |
| b1088 | yceD | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b1307 | pspD | +0.5 | 1.3 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b1074 | flgC | +0.5 | 1.5 | flagellar basal-body rod protein C (NCBI) | compare |
| b1946 | fliN | +0.5 | 1.3 | flagellar motor switch protein (NCBI) | compare |
| b1814 | sdaA | +0.5 | 1.3 | L-serine deaminase I (NCBI) | compare |
| b1434 | ydcN | +0.5 | 0.9 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0580 | ybdJ | +0.5 | 0.9 | predicted inner membrane protein (NCBI) | compare |
| b4585 | sroB | +0.5 | 1.0 | Novel sRNA, function unknown (RefSeq) | compare |
| b3027 | ygiZ | +0.5 | 0.3 | conserved inner membrane protein (NCBI) | compare |
| b1366 | ydaY | +0.5 | 2.4 | Rac prophage; predicted protein (RefSeq) | compare |
| b4701 | sokX | +0.5 | 0.6 | sok-related sRNA, function unknown (RefSeq) | compare |
| b0504 | ybbS | +0.5 | 2.2 | DNA-binding transcriptional activator of the allD operon (NCBI) | compare |
| b1685 | ydiH | +0.5 | 1.0 | predicted protein (RefSeq) | compare |
| b1804 | rnd | +0.5 | 2.3 | ribonuclease D (NCBI) | compare |
| b2066 | udk | +0.5 | 2.4 | uridine/cytidine kinase (VIMSS) | compare |
| b1233 | ychJ | +0.5 | 2.3 | hypothetical protein (NCBI) | compare |
| b0127 | yadG | +0.5 | 2.6 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b4458 | oxyS | +0.5 | 0.9 | global regulatory RNA (NCBI) | compare |
| b1282 | yciH | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b0379 | yaiY | +0.5 | 2.8 | predicted inner membrane protein (NCBI) | compare |
| b1429 | tehA | +0.5 | 0.6 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b4520 | ymgF | +0.5 | 0.9 | hypothetical protein (NCBI) | compare |
| b4157 | yjeN | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b2200 | ccmB | +0.5 | 2.5 | heme exporter subunit (NCBI) | compare |
| b1618 | uidR | +0.5 | 1.5 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3120 | yhaB | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b4217 | ytfK | +0.4 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2236 | yfaE | +0.4 | 1.7 | predicted 2Fe-2S cluster-containing protein (NCBI) | compare |
| b3236 | mdh | +0.4 | 2.8 | malate dehydrogenase (NCBI) | compare |
| b2742 | nlpD | +0.4 | 3.0 | predicted outer membrane lipoprotein (NCBI) | compare |
| b1161 | ycgX | +0.4 | 0.5 | hypothetical protein (NCBI) | compare |
| b4698 | mgrR | +0.4 | 1.9 | sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides (RefSeq) | compare |
| b1251 | yciI | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b2620 | smpB | +0.4 | 0.7 | SsrA-binding protein (NCBI) | compare |
| b0972 | hyaA | +0.4 | 2.6 | hydrogenase 1, small subunit (NCBI) | compare |
| b0564 | appY | +0.4 | 0.7 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b1278 | pgpB | +0.4 | 1.1 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b1862 | yebB | +0.4 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1953 | b1953 | +0.4 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2539 | hcaF | +0.4 | 1.7 | 3-phenylpropionate dioxygenase, small (beta) subunit (NCBI) | compare |
| b1553 | ydfP | +0.4 | 1.6 | Qin prophage; conserved protein (NCBI) | compare |
| b4451 | ryhB | +0.4 | 0.8 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b4369 | leuP | +0.4 | 1.1 | tRNA-Leu (NCBI) | compare |
| b2156 | lysP | +0.4 | 2.8 | lysine transporter (NCBI) | compare |
| b4294 | insA-7 | +0.4 | 1.4 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b3032 | cpdA | +0.4 | 3.1 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b1920 | fliY | +0.4 | 1.0 | cystine transporter subunit (NCBI) | compare |
| b1382 | ynbE | +0.4 | 0.7 | predicted lipoprotein (NCBI) | compare |
| b1446 | ydcY | +0.4 | 1.1 | hypothetical protein (NCBI) | compare |
| b1261 | trpB | +0.4 | 1.4 | tryptophan synthase subunit beta (NCBI) | compare |
| b1590 | ynfH | +0.4 | 1.5 | oxidoreductase, membrane subunit (NCBI) | compare |
| b1594 | dgsA | +0.4 | 1.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4454 | rdlD | +0.4 | 2.3 | sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR-D repeat, with toxic peptide LdrD (RefSeq) | compare |
| b1891 | flhC | +0.4 | 2.0 | DNA-binding transcriptional dual regulator with FlhD (NCBI) | compare |
| b1904 | yecR | +0.4 | 1.2 | hypothetical protein (NCBI) | compare |
| b1190 | dadX | +0.4 | 1.9 | alanine racemase (NCBI) | compare |
| b2258 | b2258 | +0.4 | 0.7 | putative transport/receptor protein (VIMSS) | compare |
| b1940 | fliH | +0.4 | 2.3 | flagellar biosynthesis; export of flagellar proteins? (VIMSS) | compare |
| b0685 | ybfE | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1171 | b1171 | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b0753 | ybgS | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b3101 | yqjF | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1635 | gst | +0.4 | 2.0 | glutathionine S-transferase (NCBI) | compare |
| b3228 | sspB | +0.4 | 1.6 | ClpXP protease specificity-enhancing factor (NCBI) | compare |
| b4546 | ypeB | +0.4 | 0.7 | hypothetical protein (NCBI) | compare |
| b3292 | zntR | +0.4 | 1.2 | zinc-responsive transcriptional regulator (NCBI) | compare |
| b4329 | yjiG | +0.4 | 1.7 | conserved inner membrane protein (NCBI) | compare |
| b3625 | rfaY | +0.4 | 1.8 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b4279 | yjhB | +0.4 | 0.2 | putative transport protein (VIMSS) | compare |
| b2676 | nrdF | +0.4 | 2.1 | ribonucleotide-diphosphate reductase beta subunit (NCBI) | compare |
| b0825 | mipB | +0.4 | 1.6 | putative transaldolase (VIMSS) | compare |
| b4085 | alsE | +0.4 | 1.7 | allulose-6-phosphate 3-epimerase (NCBI) | compare |
| b1949 | fliQ | +0.4 | 0.8 | flagellar biosynthesis protein Q (NCBI) | compare |
| b3029 | ygiN | +0.4 | 1.0 | quinol monooxygenase (NCBI) | compare |
| b3150 | yraP | +0.4 | 2.3 | hypothetical protein (NCBI) | compare |
| b1063 | yceB | +0.4 | 1.3 | predicted lipoprotein (NCBI) | compare |
| b2814 | metZ | +0.4 | 0.7 | tRNA-Met (NCBI) | compare |
| b1835 | yebU | +0.4 | 2.1 | putative nucleolar proteins (VIMSS) | compare |
| b1433 | b1433 | +0.4 | 1.6 | putative membrane transport protein (VIMSS) | compare |
| b1287 | yciW | +0.4 | 2.1 | putative oxidoreductase (VIMSS) | compare |
| b4327 | yjiE | +0.4 | 2.2 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1441 | ydcT | +0.4 | 1.6 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b1963 | b1963 | +0.4 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b3858 | yihD | +0.4 | 0.8 | hypothetical protein (NCBI) | compare |
| b1213 | ychQ | +0.4 | 1.4 | predicted transcriptional regulator (NCBI) | compare |
| b4438 | cyaR | +0.4 | 1.5 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b0340 | cynS | +0.4 | 0.8 | cyanate hydratase (NCBI) | compare |
| b0798 | ybiA | +0.4 | 1.4 | hypothetical protein (NCBI) | compare |
| b2187 | yejL | +0.4 | 1.5 | hypothetical protein (NCBI) | compare |
| b2356 | yfdM | +0.4 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b3753 | rbsR | +0.3 | 2.6 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b1134 | ymfB | +0.3 | 1.1 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b1220 | ychO | +0.3 | 1.7 | predicted invasin (RefSeq) | compare |
| b2754 | ygbF | +0.3 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2428 | yfeU | +0.3 | 1.9 | N-acetylmuramic acid-6-phosphate etherase (NCBI) | compare |
| b0456 | ybaA | +0.3 | 1.6 | hypothetical protein (NCBI) | compare |
| b1697 | ydiQ | +0.3 | 2.2 | hypothetical protein (NCBI) | compare |
| b0230 | mbhA | +0.3 | 2.2 | putative motility protein (VIMSS) | compare |
| b3260 | dusB | +0.3 | 1.6 | tRNA-dihydrouridine synthase B (NCBI) | compare |
| b1426 | ydcH | +0.3 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b2260 | menE | +0.3 | 2.8 | O-succinylbenzoic acid--CoA ligase (NCBI) | compare |
| b1189 | dadA | +0.3 | 2.3 | D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) | compare |
| b1004 | wrbA | +0.3 | 2.1 | TrpR binding protein WrbA (NCBI) | compare |
| b3194 | yrbE | +0.3 | 2.6 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1698 | ydiR | +0.3 | 1.4 | predicted electron transfer flavoprotein, FAD-binding (NCBI) | compare |
| b1108 | ycfP | +0.3 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b4411 | ecnB | +0.3 | 1.5 | entericidin B membrane lipoprotein (NCBI) | compare |
| b4378 | yjjV | +0.3 | 1.5 | predicted DNase (NCBI) | compare |
| b2324 | b2324 | +0.3 | 1.9 | putative peptidase (VIMSS) | compare |
| b2899 | yqfA | +0.3 | 1.7 | predicted oxidoreductase, inner membrane subunit (NCBI) | compare |
| b2953 | yggU | +0.3 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b4215 | ytfI | +0.3 | 0.7 | hypothetical protein (NCBI) | compare |
| b1763 | topB | +0.3 | 1.1 | DNA topoisomerase III (NCBI) | compare |
| b4376 | osmY | +0.3 | 1.7 | periplasmic protein (NCBI) | compare |
| b3361 | fic | +0.3 | 1.8 | stationary-phase protein, cell division (NCBI) | compare |
| b4651 | yibW | +0.3 | 0.2 | no description | compare |
| b1919 | yedO | +0.3 | 0.8 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b1248 | b1248 | +0.3 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4172 | hfq | +0.3 | 0.3 | RNA-binding protein Hfq (NCBI) | compare |
| b2477 | nlpB | +0.3 | 1.4 | lipoprotein-34 (VIMSS) | compare |
| b1818 | manY | +0.3 | 0.7 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b3641 | ttk | +0.3 | 2.5 | putative transcriptional regulator (VIMSS) | compare |
| b0767 | ybhE | +0.3 | 0.9 | 6-phosphogluconolactonase (NCBI) | compare |
| b3229 | sspA | +0.3 | 1.0 | stringent starvation protein A (NCBI) | compare |
| b4532 | yncN | +0.3 | 1.3 | orf, hypothetical protein (VIMSS) | compare |
| b2567 | rnc | +0.3 | 0.4 | ribonuclease III (NCBI) | compare |
| b4692 | oweE | +0.3 | 1.2 | no description | compare |
| b1836 | yebV | +0.3 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1424 | mdoD | +0.3 | 1.4 | glucan biosynthesis protein, periplasmic (RefSeq) | compare |
| b1143 | ymfI | +0.3 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1725 | yniA | +0.3 | 2.0 | predicted phosphotransferase/kinase (NCBI) | compare |
| b0388 | aroL | +0.3 | 1.2 | shikimate kinase II (NCBI) | compare |
| b1141 | ymfG | +0.3 | 1.2 | e14 prophage; predicted excisionase (NCBI) | compare |
| b0895 | dmsB | +0.3 | 1.6 | dimethyl sulfoxide reductase, anaerobic, subunit B (NCBI) | compare |
| b2792 | yqcC | +0.3 | 1.3 | hypothetical protein (NCBI) | compare |
| b1006 | ycdG | +0.3 | 1.5 | putative transport protein (VIMSS) | compare |
| b3102 | yqjG | +0.3 | 1.8 | predicted S-transferase (NCBI) | compare |
| b2945 | endA | +0.3 | 1.4 | DNA-specific endonuclease I (NCBI) | compare |
| b4345 | mcrC | +0.3 | 0.3 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b1566 | flxA | +0.3 | 1.5 | Qin prophage; predicted protein (NCBI) | compare |
| b2868 | xdhC | +0.3 | 1.5 | xanthine dehydrogenase, Fe-S binding subunit (NCBI) | compare |
| b2485 | hyfE | +0.3 | 1.4 | hydrogenase 4, membrane subunit (NCBI) | compare |
| b1595 | ynfL | +0.3 | 0.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2940 | yqgC | +0.3 | 1.1 | hypothetical protein (NCBI) | compare |
| b1488 | ddpX | +0.3 | 1.2 | D-ala-D-ala dipeptidase, Zn-dependent (NCBI) | compare |
| b2646 | ypjF | +0.3 | 1.2 | CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system (NCBI) | compare |