| | gene | name | fitness | t score | description | |
|---|
| b0149 | mrcB | -4.1 | -13.9 | penicillin-binding protein 1b (NCBI) | compare |
| b3792 | wzxE | -3.9 | -4.6 | O-antigen translocase (NCBI) | compare |
| b3839 | tatC | -3.7 | -6.2 | TatABCE protein translocation system subunit (NCBI) | compare |
| b3398 | yrfF | -3.5 | -3.4 | predicted inner membrane protein (NCBI) | compare |
| b1105 | ycfM | -3.1 | -5.8 | predicted outer membrane lipoprotein (NCBI) | compare |
| b3052 | rfaE | -2.7 | -7.7 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b3493 | pitA | -2.7 | -8.8 | phosphate transporter, low-affinity (NCBI) | compare |
| b3405 | ompR | -2.5 | -6.5 | osmolarity response regulator (NCBI) | compare |
| b1236 | galU | -2.3 | -4.8 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b0740 | tolB | -2.3 | -6.2 | translocation protein TolB precursor (NCBI) | compare |
| b3621 | rfaC | -2.2 | -7.0 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b3619 | rfaD | -2.1 | -4.7 | ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) | compare |
| b3979 | thrT | -2.1 | -1.0 | tRNA-Thr (NCBI) | compare |
| b3204 | ptsN | -2.0 | -6.9 | sugar-specific enzyme IIA component of PTS (NCBI) | compare |
| b0049 | apaH | -2.0 | -5.2 | diadenosinetetraphosphatase (NCBI) | compare |
| b3620 | rfaF | -1.8 | -6.8 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b0438 | clpX | -1.8 | -8.3 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b2688 | gshA | -1.8 | -8.9 | glutamate--cysteine ligase (NCBI) | compare |
| b3426 | glpD | -1.8 | -3.5 | sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI) | compare |
| b3290 | trkA | -1.7 | -1.2 | potassium transporter peripheral membrane component (NCBI) | compare |
| b3650 | spoT | -1.7 | -5.2 | bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (NCBI) | compare |
| b0437 | clpP | -1.7 | -6.7 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b0630 | lipB | -1.7 | -1.1 | protein of lipoate biosynthesis (VIMSS) | compare |
| b1861 | ruvA | -1.6 | -1.7 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b0739 | tolA | -1.6 | -4.0 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b0014 | dnaK | -1.6 | -2.0 | molecular chaperone DnaK (NCBI) | compare |
| b1765 | ydjA | -1.6 | -1.8 | predicted oxidoreductase (NCBI) | compare |
| b2498 | upp | -1.6 | -3.5 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b0222 | lpcA | -1.6 | -3.5 | phosphoheptose isomerase (NCBI) | compare |
| b3863 | polA | -1.6 | -1.5 | DNA polymerase I (NCBI) | compare |
| b3026 | qseC | -1.5 | -4.7 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b1095 | fabF | -1.4 | -7.8 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b3035 | tolC | -1.4 | -7.8 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b4201 | priB | -1.4 | -2.3 | primosomal replication protein N (NCBI) | compare |
| b1882 | cheY | -1.4 | -0.9 | chemotaxis regulator transmitting signal to flagellar motor component (NCBI) | compare |
| b1290 | sapF | -1.3 | -2.0 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1361 | ydaW | -1.3 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1677 | lpp | -1.3 | -3.6 | murein lipoprotein (NCBI) | compare |
| b1493 | gadB | -1.3 | -1.2 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b1292 | sapC | -1.3 | -2.4 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b1291 | sapD | -1.3 | -1.8 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b2433 | b2433 | -1.3 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b2259 | pmrD | -1.3 | -2.1 | polymyxin resistance protein B (VIMSS) | compare |
| b2830 | nudH | -1.2 | -0.8 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b3842 | rfaH | -1.2 | -5.6 | transcriptional activator RfaH (NCBI) | compare |
| b3838 | tatB | -1.2 | -5.5 | sec-independent translocase (NCBI) | compare |
| b3390 | aroK | -1.2 | -1.7 | shikimate kinase I (NCBI) | compare |
| b2288 | nuoA | -1.2 | -2.2 | NADH dehydrogenase I chain A (VIMSS) | compare |
| b0200 | gmhB | -1.1 | -1.2 | hypothetical protein (NCBI) | compare |
| b1860 | ruvB | -1.1 | -0.7 | Holliday junction DNA helicase B (NCBI) | compare |
| b4503 | yafF | -1.1 | -1.0 | no description | compare |
| b1258 | yciF | -1.1 | -0.7 | hypothetical protein (NCBI) | compare |
| b4202 | rpsR | -1.1 | -1.0 | 30S ribosomal protein S18 (NCBI) | compare |
| b1358 | ydaT | -1.1 | -1.8 | Rac prophage; predicted protein (NCBI) | compare |
| b3414 | gntY | -1.0 | -4.2 | predicted gluconate transport associated protein (NCBI) | compare |
| b0439 | lon | -1.0 | -3.2 | DNA-binding ATP-dependent protease La (NCBI) | compare |
| b0741 | pal | -1.0 | -3.2 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b1161 | ycgX | -1.0 | -0.9 | hypothetical protein (NCBI) | compare |
| b2531 | iscR | -1.0 | -1.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3389 | aroB | -1.0 | -6.9 | 3-dehydroquinate synthase (NCBI) | compare |
| b1476 | fdnI | -1.0 | -1.4 | formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI) | compare |
| b2318 | truA | -1.0 | -3.1 | tRNA pseudouridine synthase A (NCBI) | compare |
| b0738 | tolR | -1.0 | -2.3 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b4508 | peaD | -1.0 | -1.5 | putative sensory transduction regulator (VIMSS) | compare |
| b3630 | rfaP | -1.0 | -6.4 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b1058 | yceO | -0.9 | -0.5 | hypothetical protein (NCBI) | compare |
| b1235 | rssB | -0.9 | -4.9 | response regulator of RpoS (NCBI) | compare |
| b4593 | ymgI | -0.9 | -0.6 | hypothetical protein (RefSeq) | compare |
| b2947 | gshB | -0.9 | -3.1 | glutathione synthetase (NCBI) | compare |
| b4208 | cycA | -0.9 | -6.3 | D-alanine/D-serine/glycine transporter (NCBI) | compare |
| b0758 | galT | -0.9 | -5.0 | galactose-1-phosphate uridylyltransferase (NCBI) | compare |
| b4191 | ulaR | -0.9 | -3.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1506 | yneL | -0.9 | -1.2 | predicted transcriptional regulator (NCBI) | compare |
| b0726 | sucA | -0.9 | -2.6 | alpha-ketoglutarate decarboxylase (NCBI) | compare |
| b4222 | ytfP | -0.9 | -3.6 | hypothetical protein (NCBI) | compare |
| b0247 | ykfG | -0.9 | -1.8 | CP4-6 prophage; predicted DNA repair protein (NCBI) | compare |
| b4431 | rprA | -0.9 | -2.2 | Positive regulatory sRNA for RpoS translation; non-essential gene (RefSeq) | compare |
| b1084 | rne | -0.9 | -3.3 | fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI) | compare |
| b2699 | recA | -0.9 | -0.6 | recombinase A (NCBI) | compare |
| b1351 | racC | -0.9 | -0.5 | Rac prophage; predicted protein (NCBI) | compare |
| b4146 | yjeK | -0.9 | -2.2 | predicted lysine aminomutase (NCBI) | compare |
| b4585 | sroB | -0.8 | -1.5 | Novel sRNA, function unknown (RefSeq) | compare |
| b0019 | nhaA | -0.8 | -5.8 | pH-dependent sodium/proton antiporter (NCBI) | compare |
| b1557 | cspB | -0.8 | -2.4 | Qin prophage; cold shock protein (NCBI) | compare |
| b3387 | dam | -0.8 | -6.7 | DNA adenine methylase (NCBI) | compare |
| b2340 | sixA | -0.8 | -3.3 | phosphohistidine phosphatase (NCBI) | compare |
| b0548 | ninE | -0.8 | -2.5 | DLP12 prophage; conserved protein (NCBI) | compare |
| b0028 | fkpB | -0.8 | -2.0 | FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b2518 | ndk | -0.8 | -1.9 | nucleoside diphosphate kinase (NCBI) | compare |
| b3649 | rpoZ | -0.8 | -2.4 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b0145 | dksA | -0.8 | -2.7 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b1556 | b1556 | -0.8 | -2.1 | orf, hypothetical protein (VIMSS) | compare |
| b3281 | aroE | -0.8 | -6.8 | dehydroshikimate reductase, NAD(P)-binding (NCBI) | compare |
| b2906 | visC | -0.8 | -4.3 | hypothetical protein (NCBI) | compare |
| b3631 | rfaG | -0.8 | -6.5 | glucosyltransferase I (NCBI) | compare |
| b0890 | ftsK | -0.8 | -2.4 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b1497 | b1497 | -0.8 | -0.4 | putative enzyme (VIMSS) | compare |
| b4613 | dinQ | -0.8 | -1.5 | Damage inducible, function unknown (RefSeq) | compare |
| b1499 | ydeO | -0.8 | -0.4 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b1551 | b1551 | -0.8 | -0.4 | orf, hypothetical protein (VIMSS) | compare |
| b1576 | ydfD | -0.8 | -0.4 | Qin prophage; predicted protein (NCBI) | compare |
| b3149 | yraO | -0.8 | -3.8 | DnaA initiator-associating factor for replication initiation (NCBI) | compare |
| b1147 | ymfL | -0.8 | -1.9 | e14 prophage; predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1363 | trkG | -0.8 | -0.4 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b2673 | nrdH | -0.8 | -3.3 | glutaredoxin-like protein (NCBI) | compare |
| b1347 | ydaC | -0.8 | -0.4 | Rac prophage; predicted protein (NCBI) | compare |
| b1545 | pinQ | -0.7 | -0.3 | Qin prophage; predicted site-specific recombinase (NCBI) | compare |
| b3836 | b3836 | -0.7 | -2.5 | orf, hypothetical protein (VIMSS) | compare |
| b1968 | yedV | -0.7 | -2.0 | predicted sensory kinase in two-component regulatory system with YedW (NCBI) | compare |
| b0888 | trxB | -0.7 | -2.4 | thioredoxin reductase, FAD/NAD(P)-binding (NCBI) | compare |
| b0431 | cyoB | -0.7 | -5.6 | cytochrome o ubiquinol oxidase subunit I (NCBI) | compare |
| b2325 | yfcL | -0.7 | -3.1 | hypothetical protein (NCBI) | compare |
| b0080 | fruR | -0.7 | -3.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0535 | fimZ | -0.7 | -2.6 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b4509 | ylcG | -0.7 | -2.2 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1465 | narV | -0.7 | -2.2 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b1257 | yciE | -0.7 | -0.3 | hypothetical protein (NCBI) | compare |
| b2282 | nuoH | -0.7 | -2.2 | NADH dehydrogenase subunit H (NCBI) | compare |
| b3150 | yraP | -0.7 | -3.2 | hypothetical protein (NCBI) | compare |
| b1658 | purR | -0.7 | -4.0 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b4685 | yrbN | -0.7 | -1.9 | expressed protein (RefSeq) | compare |
| b1693 | aroD | -0.7 | -3.7 | 3-dehydroquinate dehydratase (NCBI) | compare |
| b1878 | flhE | -0.7 | -3.0 | hypothetical protein (NCBI) | compare |
| b1129 | phoQ | -0.7 | -1.1 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b1324 | tpx | -0.7 | -3.2 | thiol peroxidase (NCBI) | compare |
| b1090 | plsX | -0.7 | -3.1 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b3849 | trkH | -0.7 | -5.1 | potassium transporter (NCBI) | compare |
| b2659 | b2659 | -0.7 | -1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1182 | hlyE | -0.7 | -0.3 | hemolysin E (VIMSS) | compare |
| b4178 | yjeB | -0.7 | -3.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3652 | recG | -0.7 | -4.0 | ATP-dependent DNA helicase (NCBI) | compare |
| b3933 | ftsN | -0.7 | -5.0 | essential cell division protein (NCBI) | compare |
| b1792 | yeaO | -0.7 | -2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1176 | minC | -0.7 | -1.8 | septum formation inhibitor (NCBI) | compare |
| b2329 | aroC | -0.6 | -2.8 | chorismate synthase (NCBI) | compare |
| b1730 | ydjO | -0.6 | -0.8 | predicted protein (RefSeq) | compare |
| b1167 | ymgC | -0.6 | -0.3 | hypothetical protein (NCBI) | compare |
| b4451 | ryhB | -0.6 | -1.4 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b1165 | ymgA | -0.6 | -0.3 | hypothetical protein (NCBI) | compare |
| b4497 | yeeL | -0.6 | -0.7 | no description | compare |
| b3742 | mioC | -0.6 | -3.0 | flavodoxin (NCBI) | compare |
| b1530 | marR | -0.6 | -2.2 | multiple antibiotic resistance protein; repressor of mar operon (VIMSS) | compare |
| b2683 | ygaH | -0.6 | -3.6 | predicted inner membrane protein (NCBI) | compare |
| b0430 | cyoC | -0.6 | -2.2 | cytochrome o ubiquinol oxidase subunit III (NCBI) | compare |
| b1505 | ydeT | -0.6 | -1.0 | hypothetical protein (RefSeq) | compare |
| b3613 | yibP | -0.6 | -1.6 | putative membrane protein (VIMSS) | compare |
| b3199 | yrbK | -0.6 | -1.4 | hypothetical protein (NCBI) | compare |
| b1582 | ynfA | -0.6 | -1.0 | hypothetical protein (NCBI) | compare |
| b0429 | cyoD | -0.6 | -3.1 | cytochrome o ubiquinol oxidase subunit IV (NCBI) | compare |
| b1847 | yebF | -0.6 | -0.9 | predicted protein (RefSeq) | compare |
| b2055 | wcaE | -0.6 | -0.3 | predicted glycosyl transferase (NCBI) | compare |
| b1977 | asnT | -0.6 | -2.1 | tRNA-Asn (NCBI) | compare |
| b3205 | yhbJ | -0.6 | -2.4 | hypothetical protein (NCBI) | compare |
| b4294 | insA-7 | -0.6 | -1.6 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b2620 | smpB | -0.6 | -0.8 | SsrA-binding protein (NCBI) | compare |
| b2707 | srlR | -0.6 | -4.2 | DNA-bindng transcriptional repressor (NCBI) | compare |
| b1001 | yccE | -0.6 | -0.3 | hypothetical protein (NCBI) | compare |
| b1524 | yneH | -0.6 | -0.9 | predicted glutaminase (NCBI) | compare |
| b2143 | cdd | -0.6 | -3.0 | cytidine deaminase (NCBI) | compare |
| b3791 | rffA | -0.6 | -3.5 | TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) | compare |
| b0627 | tatE | -0.6 | -1.3 | twin arginine translocase protein E (NCBI) | compare |
| b4436 | ryeC | -0.6 | -1.5 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b0623 | cspE | -0.6 | -1.4 | cold shock protein E (NCBI) | compare |
| b4407 | thiS | -0.6 | -1.3 | sulfur carrier protein ThiS (NCBI) | compare |
| b3609 | secB | -0.6 | -1.8 | export protein SecB (NCBI) | compare |
| b2450 | yffS | -0.6 | -0.9 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b4413 | sokC | -0.6 | -1.1 | regulatory antisense RNA (NCBI) | compare |
| b4634 | ylcF | -0.6 | -2.5 | no description | compare |
| b1553 | ydfP | -0.6 | -1.9 | Qin prophage; conserved protein (NCBI) | compare |
| b3169 | nusA | -0.6 | -1.2 | transcription elongation factor NusA (NCBI) | compare |
| b1573 | ydfC | -0.6 | -1.2 | Qin prophage; predicted protein (RefSeq) | compare |
| b4527 | b1354 | -0.6 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b0427 | yajR | -0.6 | -4.1 | putative transport protein (VIMSS) | compare |
| b1409 | ynbB | -0.6 | -0.6 | predicted CDP-diglyceride synthase (NCBI) | compare |
| b0218 | yafU | -0.5 | -1.6 | predicted inner membrane protein (RefSeq) | compare |
| b0161 | degP | -0.5 | -2.5 | serine endoprotease (protease Do), membrane-associated (NCBI) | compare |
| b3119 | tdcR | -0.5 | -1.9 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b1536 | ydeI | -0.5 | -0.6 | hypothetical protein (NCBI) | compare |
| b1877 | yecT | -0.5 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b4568 | ytjA | -0.5 | -1.6 | predicted protein (RefSeq) | compare |
| b3388 | damX | -0.5 | -4.6 | hypothetical protein (NCBI) | compare |
| b3911 | cpxA | -0.5 | -3.8 | two-component sensor protein (NCBI) | compare |
| b0428 | cyoE | -0.5 | -3.4 | protoheme IX farnesyltransferase (NCBI) | compare |
| b3465 | yhhF | -0.5 | -3.0 | predicted methyltransferase (NCBI) | compare |
| b1522 | yneF | -0.5 | -2.1 | predicted diguanylate cyclase (NCBI) | compare |
| b0676 | nagC | -0.5 | -3.5 | DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine (NCBI) | compare |
| b1548 | nohA | -0.5 | -1.4 | Qin prophage; predicted packaging protein (RefSeq) | compare |
| b2614 | grpE | -0.5 | -1.5 | heat shock protein (NCBI) | compare |
| b1830 | prc | -0.5 | -2.4 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b3226 | yhcK | -0.5 | -2.6 | putative FADA-type transcriptional regulator (VIMSS) | compare |
| b2297 | pta | -0.5 | -0.3 | phosphate acetyltransferase (NCBI) | compare |
| b0737 | tolQ | -0.5 | -1.3 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b1025 | ycdT | -0.5 | -1.0 | predicted diguanylate cyclase (NCBI) | compare |
| b1370 | insH-5 | -0.5 | -1.3 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b2263 | yfbB | -0.5 | -2.0 | predicted peptidase (NCBI) | compare |
| b0432 | cyoA | -0.5 | -3.9 | cytochrome o ubiquinol oxidase subunit II (NCBI) | compare |
| b1192 | ldcA | -0.5 | -1.9 | L,D-carboxypeptidase A (NCBI) | compare |
| b0015 | dnaJ | -0.5 | -3.5 | chaperone Hsp40, co-chaperone with DnaK (NCBI) | compare |
| b0912 | ihfB | -0.5 | -1.8 | integration host factor subunit beta (NCBI) | compare |
| b0759 | galE | -0.5 | -2.5 | UDP-galactose-4-epimerase (VIMSS) | compare |