Experiment set17IT045 for Pseudomonas putida KT2440

Compare to:

Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PP_5320 -5.8 -6.9 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_4890 -5.7 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_4058 -5.4 -3.7 1,4-alpha-glucan branching enzyme compare
PP_0395 -5.2 -13.4 putative type IV piliation protein compare
PP_2088 -5.2 -3.6 RNA polymerase sigma factor SigX compare
PP_0396 -5.1 -14.0 conserved protein of unknown function compare
PP_5321 -4.8 -9.3 two-component system sensory histidine kinase compare
PP_4008 -4.8 -4.6 ATP-dependent serine protease compare
PP_0293 -4.4 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0965 -4.4 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1224 -4.3 -6.6 periplasmic subunit of the TolQRA transport system compare
PP_4902 -4.2 -2.9 Oligoribonuclease compare
PP_5289 -4.2 -5.7 Acetylglutamate kinase compare
PP_1198 -4.0 -4.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0397 -4.0 -17.3 protein kinase compare
PP_1985 -4.0 -5.9 3-isopropylmalate dehydratase large subunit compare
PP_1237 -3.9 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0435 -3.8 -3.7 Peptidase, M23/M37 family compare
PP_0184 -3.8 -8.5 Argininosuccinate lyase compare
PP_0082 -3.8 -7.3 tryptophan synthase alpha chain compare
PP_4471 -3.7 -5.1 Magnesium transporter compare
PP_5155 -3.7 -5.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1079 -3.6 -7.8 Ornithine carbamoyltransferase compare
PP_5075 -3.6 -13.9 glutamate synthase (NADPH) beta subunit compare
PP_1988 -3.6 -7.9 3-isopropylmalate dehydrogenase compare
PP_0292 -3.5 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0083 -3.5 -7.4 tryptophan synthase beta chain compare
PP_1088 -3.5 -13.0 Argininosuccinate synthase compare
PP_0420 -3.4 -10.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4909 -3.4 -7.2 phosphoserine phosphatase compare
PP_0966 -3.4 -11.1 Histidinol dehydrogenase compare
PP_0962 -3.3 -3.6 toluene-tolerance protein compare
PP_1995 -3.2 -9.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2371 -3.2 -6.7 Sulphite reductase hemoprotein, beta subunit compare
PP_0417 -3.2 -15.8 Anthranilate synthase component 1 compare
PP_5015 -3.1 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0422 -3.1 -6.9 Indole-3-glycerol phosphate synthase compare
PP_5076 -3.1 -15.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_0967 -3.1 -9.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1706 -3.1 -4.8 Nitrite reductase compare
PP_5047 -3.0 -7.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0289 -3.0 -8.9 Imidazoleglycerol-phosphate dehydratase compare
PP_2087 -3.0 -4.1 CmpX protein compare
PP_5048 -3.0 -7.5 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4122 -2.9 -2.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5185 -2.9 -4.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0421 -2.8 -7.2 Anthranilate phosphoribosyltransferase compare
PP_4798 -2.8 -8.9 putative Membrane-bound lytic murein transglycosylase compare
PP_0290 -2.8 -6.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2001 -2.8 -10.1 O-succinylhomoserine sulfhydrylase compare
PP_4678 -2.8 -12.2 Ketol-acid reductoisomerase compare
PP_5098 -2.8 -7.4 methionine biosynthesis protein MetW compare
PP_4994 -2.7 -4.6 conserved protein of unknown function compare
PP_1912 -2.7 -5.8 Phosphate acyltransferase compare
PP_3511 -2.7 -7.9 Branched-chain-amino-acid aminotransferase compare
PP_2163 -2.7 -7.9 VacJ lipoprotein compare
PP_3999 -2.6 -7.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5097 -2.6 -11.1 homoserine O-acetyltransferase compare
PP_0246 -2.6 -3.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_5128 -2.6 -7.3 Dihydroxy-acid dehydratase compare
PP_1589 -2.6 -9.5 uridylyltransferase compare
PP_4136 -2.6 -2.4 Transcriptional regulator, LuxR family compare
PP_2370 -2.5 -3.9 conserved protein of unknown function compare
PP_4680 -2.5 -12.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1216 -2.4 -3.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4342 -2.4 -4.6 flagellar synthesis regulator, putative ATPase compare
PP_3829 -2.4 -4.7 Molybdenum transport system permease protein ModB compare
PP_5328 -2.4 -2.3 putative phosphate transport system permease protein compare
PP_5014 -2.3 -3.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_1428 -2.3 -2.3 Sigma factor AlgU negative regulatory protein compare
PP_4480 -2.3 -8.5 arginine N-succinyltransferase, subunit alpha compare
PP_1705 -2.3 -7.7 nitrite reductase [NAD(P)H] large subunit compare
PP_4696 -2.2 -5.4 Nitrogen regulation protein NR(I) compare
PP_1420 -2.2 -9.5 Transcriptional regulatory protein tctD conserved
PP_2302 -2.2 -6.5 DNA-binding, ATP-dependent protease compare
PP_1778 -2.2 -6.9 Lipopolysaccharide ABC export system, permease protein compare
PP_2327 -2.2 -6.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5331 -2.2 -4.6 Long-chain acyl-CoA thioester hydrolase compare
PP_2123 -2.2 -8.1 molybdenum::molybdopterin ligase compare
PP_1025 -2.1 -8.8 2-isopropylmalate synthase compare
PP_1986 -2.1 -2.8 3-isopropylmalate dehydratase small subunit compare
PP_1364 -2.1 -7.5 conserved exported protein of unknown function compare
PP_0949 -2.1 -6.1 putative ATP-binding protein UPF0042 compare
PP_4679 -2.1 -4.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2402 -2.1 -2.8 putative Sensor histidine kinase compare
PP_5217 -2.1 -12.0 Polyphosphate kinase compare
PP_0960 -2.0 -5.4 phospholipid ABC transporter binding protein compare
PP_1292 -2.0 -6.5 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_1421 -2.0 -7.9 putative Sensor histidine kinase TctE compare
PP_1733 -2.0 -3.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_0725 -2.0 -5.7 conserved hypothetical TPR repeat protein compare
PP_4937 -2.0 -3.4 toluene tolerance protein compare
PP_0958 -1.9 -6.1 phospholipid ABC transporter ATP-binding subunit compare
PP_4891 -1.9 -4.8 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4804 -1.9 -1.3 RlpA-like lipoprotein compare
PP_4126 -1.9 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_1418 -1.9 -7.3 putative Tricarboxylate transport protein TctC compare
PP_4143 -1.9 -4.3 conserved protein of unknown function compare
PP_0961 -1.9 -5.6 toluene tolerance protein compare
PP_5232 -1.9 -3.2 conserved protein of unknown function compare
PP_1293 -1.9 -2.8 molybdopterin synthase small subunit compare
PP_2092 -1.8 -7.9 Nitrate transporter compare
PP_3828 -1.8 -6.6 Molybdate-binding periplasmic protein compare
PP_4120 -1.8 -2.7 NADH-quinone oxidoreductase subunit B compare
PP_0846 -1.8 -1.7 DnaK-like molecular chaperone specific for IscU compare
PP_2093 -1.8 -8.3 NasT compare
PP_4131 -1.8 -4.2 NADH-quinone oxidoreductase subunit N compare
PP_2328 -1.7 -4.6 Phosphoadenosine phosphosulfate reductase compare
PP_4261 -1.7 -4.6 cation-transporting P-type ATPase compare
PP_5327 -1.7 -3.5 putative phosphate ABC transporter, permease subunit compare
PP_4009 -1.7 -3.9 ATP-dependent Clp protease adapter protein ClpS compare
PP_1318 -1.7 -5.5 Cytochrome b compare
PP_1703 -1.7 -11.0 assimilatory nitrate reductase/sulfite reductase compare
PP_4726 -1.7 -3.0 Chaperone protein DnaJ compare
PP_1654 -1.7 -1.6 cysteine synthase B compare
PP_0340 -1.7 -10.9 Glutamate-ammonia-ligase adenylyltransferase compare
PP_0735 -1.7 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_1217 -1.7 -4.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5202 -1.6 -3.1 putative cell division protein compare
PP_4121 -1.6 -3.8 NADH-quinone oxidoreductase subunit C/D compare
PP_4700 -1.6 -2.2 pantothenate synthetase compare
PP_1734 -1.6 -3.5 Probable septum site-determining protein MinC compare
PP_1860 -1.6 -5.3 Organic hydroperoxide resistance transcriptional regulator compare
PP_5216 -1.6 -2.1 exopolyphosphatase compare
PP_4129 -1.6 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5146 -1.6 -6.5 RNA pyrophosphohydrolase compare
PP_1764 -1.6 -3.0 Phosphoglycolate phosphatase 2 compare
PP_1779 -1.6 -6.1 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4263 -1.5 -3.1 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0406 -1.5 -2.7 Nucleotidyltransferase family protein compare
PP_2348 -1.5 -3.8 Sensor histidine kinase compare
PP_4695 -1.5 -8.6 Sensory box histidine kinase compare
PP_5028 -1.5 -3.4 proline iminopeptidase compare
PP_4613 -1.5 -9.4 outer membrane ferric citrate porin compare
PP_5329 -1.5 -1.0 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1994 -1.5 -2.5 tRNA pseudouridine (38-40)synthase compare
PP_1826 -1.5 -2.7 Hydrolase, isochorismatase family compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3649 -1.5 -3.5 Transcriptional regulator, GntR family compare
PP_5338 -1.5 -3.4 aspartate ammonia-lyase compare
PP_1233 -1.4 -3.0 sulfurtransferase compare
PP_4897 -1.4 -4.6 N-acetylmuramoyl-L-alanine amidase compare
PP_3903 -1.4 -2.2 conserved protein of unknown function compare
PP_1294 -1.4 -2.8 molybdopterin synthase large subunit compare
PP_0291 -1.4 -3.1 conserved protein of unknown function compare
PP_2145 -1.4 -2.8 beta-N-acetylglucosaminidase compare
PP_0127 -1.4 -3.9 Thiol:disulfide interchange protein compare
PP_2378 -1.4 -2.4 Fe/S biogenesis protein NfuA compare
PP_4060 -1.4 -8.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4892 -1.3 -4.7 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4597 -1.3 -4.7 Cyclic pyranopterin monophosphate synthase compare
PP_1231 -1.3 -4.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4880 -1.3 -6.5 exoribonuclease R compare
PP_2999 -1.2 -2.0 Glyoxalase family protein compare
PP_5007 -1.2 -2.6 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_4785 -1.2 -4.1 conserved exported protein of unknown function compare
PP_4611 -1.2 -4.7 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_2217 -1.2 -2.0 enoyl-CoA hydratase compare
PP_1664 -1.2 -2.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_4699 -1.2 -3.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1598 -1.2 -4.0 regulatory intramembrane protein RIP zinc protease compare
PP_0065 -1.2 -3.1 NAD-binding component of TrK potassium transporter compare
PP_0001 -1.2 -1.9 probable chromosome-partitioning protein compare
PP_5350 -1.2 -3.2 Transcriptional regulator, RpiR family compare
PP_4546 -1.2 -3.1 ATP-dependent helicase HrpA compare
PP_5095 -1.1 -1.1 pyrroline-5-carboxylate reductase compare
PP_1898 -1.1 -2.0 MotA/TolQ/ExbB proton channel family protein compare
PP_4938 -1.1 -4.7 putative Glycosyl transferase compare
PP_2322 -1.1 -4.2 Major outer membrane lipoprotein compare
PP_0440 -1.1 -3.0 Elongation factor Tu-A compare
PP_3532 -1.1 -2.1 Transcriptional regulator, AsnC family compare
PP_4343 -1.1 -3.8 Flagellar biosynthesis protein FlhF compare
PP_5058 -1.1 -3.9 Carboxy-terminal-processing protease compare
PP_4262 -1.1 -1.6 Cytochrome oxidase maturation protein, cbb3-type compare
PP_t10 -1.1 -2.0 tRNA-Pro compare
PP_4253 -1.1 -2.5 cytochrome c oxidase subunit, cbb3-type compare
PP_0753 -1.1 -5.1 putative Lipoprotein compare
PP_4004 -1.1 -3.0 DNA translocase FtsK compare
PP_t29 -1.0 -1.9 tRNA-Ala compare
PP_4204 -1.0 -3.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_5084 -1.0 -6.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4993 -1.0 -3.4 Glutathione synthetase compare
PP_3286 -1.0 -4.1 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_4936 -1.0 -4.5 O-antigen polymerase compare
PP_4505 -1.0 -4.3 Sensor histidine kinase compare
PP_0393 -1.0 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2442 -1.0 -1.1 conserved protein of unknown function, DUF480 family compare
PP_0414 -1.0 -4.0 Polyamine ABC transporter, permease protein compare
PP_0401 -1.0 -2.6 Ribosomal RNA small subunit methyltransferase A compare
PP_4895 -1.0 -1.5 tRNA dimethylallyltransferase compare
PP_4803 -1.0 -5.1 D-alanyl-D-alanine carboxypeptidase compare
PP_0345 -1.0 -2.7 putative Heptose kinase WapP compare
PP_1187 -1.0 -4.3 sensor protein compare
PP_4098 -1.0 -1.6 UvrABC system protein C compare
PP_2122 -1.0 -3.1 molybdenum cofactor biosynthesis protein B compare
PP_1430 -1.0 -5.2 putative periplasmic serine endoprotease DegP-like compare
PP_1317 -1.0 -2.8 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4561 -0.9 -1.1 stress response protein compare
PP_1802 -0.9 -6.8 glycosyl transferase compare
PP_1780 -0.9 -7.6 putative mannosyltransferase compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms