Experiment set17IT045 for Pseudomonas putida KT2440

Soil Extract with D-Glucose 10 mM; 30C; then outgrowth in LB

Group: carbon source
Media: Soil Extract + D-Glucose (10 mM)
Culturing: Putida_ML5_PNNL, tube, Aerobic, at 30 (C)
By: Rob Egbert on 11/7/19

Specific Phenotypes

For 14 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms

SEED Subsystems

Subsystem	#Specific
Nitrate and nitrite ammonification	4
Molybdenum cofactor biosynthesis	3
High affinity phosphate transporter and control of PHO regulon	2
Phosphate metabolism	2
Peptidoglycan Biosynthesis	1
Transport of Molybdenum	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Nitrogen metabolism
• Ascorbate and aldarate metabolism
• Ubiquinone and menaquinone biosynthesis
• Nucleotide sugars metabolism
• Glycosaminoglycan degradation
• Lipopolysaccharide biosynthesis

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
alkylnitronates degradation	2	2	1
nitrate reduction V (assimilatory)	2	1	1
molybdopterin biosynthesis	6	4	1