Experiment set17IT044 for Pseudomonas putida KT2440

Compare to:

M9 minimal media_noCarbon with D-Glucose 10 mM; 30C; then outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.2 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5015 -5.6 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5185 -5.5 -5.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -5.5 -8.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2168 -5.4 -9.1 Transaldolase compare
PP_1088 -5.4 -10.9 Argininosuccinate synthase compare
PP_0184 -5.3 -6.3 Argininosuccinate lyase compare
PP_0967 -5.3 -10.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -5.2 -8.8 3-isopropylmalate dehydrogenase compare
PP_4058 -5.2 -6.2 1,4-alpha-glucan branching enzyme compare
PP_3511 -5.2 -9.9 Branched-chain-amino-acid aminotransferase compare
PP_0292 -5.2 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1995 -5.1 -8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4678 -5.1 -14.5 Ketol-acid reductoisomerase compare
PP_0422 -5.1 -6.9 Indole-3-glycerol phosphate synthase compare
PP_4680 -4.8 -13.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4909 -4.8 -4.7 phosphoserine phosphatase compare
PP_4890 -4.7 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_0083 -4.7 -6.4 tryptophan synthase beta chain compare
PP_5289 -4.7 -5.6 Acetylglutamate kinase compare
PP_0289 -4.6 -8.8 Imidazoleglycerol-phosphate dehydratase compare
PP_0082 -4.5 -6.2 tryptophan synthase alpha chain compare
PP_0421 -4.3 -9.3 Anthranilate phosphoribosyltransferase compare
PP_1986 -4.3 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_0966 -4.3 -11.1 Histidinol dehydrogenase compare
PP_5128 -4.3 -10.1 Dihydroxy-acid dehydratase compare
PP_4679 -4.2 -7.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5014 -4.2 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_0417 -4.2 -18.2 Anthranilate synthase component 1 compare
PP_0965 -4.1 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5155 -3.8 -5.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1079 -3.8 -7.9 Ornithine carbamoyltransferase compare
PP_1985 -3.8 -5.9 3-isopropylmalate dehydratase large subunit compare
PP_2001 -3.3 -8.6 O-succinylhomoserine sulfhydrylase compare
PP_5097 -3.2 -13.9 homoserine O-acetyltransferase compare
PP_4696 -3.2 -5.7 Nitrogen regulation protein NR(I) compare
PP_0846 -3.1 -2.1 DnaK-like molecular chaperone specific for IscU compare
PP_5098 -3.1 -7.4 methionine biosynthesis protein MetW compare
PP_4902 -3.0 -4.1 Oligoribonuclease compare
PP_2327 -2.9 -6.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1110 -2.9 -5.8 serine acetyltransferase compare
PP_1231 -2.8 -7.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2371 -2.8 -6.7 Sulphite reductase hemoprotein, beta subunit compare
PP_0420 -2.7 -8.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2370 -2.7 -4.2 conserved protein of unknown function compare
PP_2348 -2.6 -7.7 Sensor histidine kinase compare
PP_5095 -2.5 -1.7 pyrroline-5-carboxylate reductase compare
PP_3999 -2.5 -7.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1022 -2.4 -6.2 glucose 6-phosphate-1-dehydrogenase compare
PP_0787 -2.4 -5.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4008 -2.3 -7.6 ATP-dependent serine protease compare
PP_0393 -2.3 -2.2 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0888 -2.2 -3.3 Photosynthetic apparatus regulatory protein RegA compare
PP_5346 -2.1 -6.5 pyruvate carboxylase subunit B compare
PP_5347 -2.1 -9.6 pyruvate carboxylase subunit A compare
PP_0065 -2.1 -4.1 NAD-binding component of TrK potassium transporter compare
PP_5348 -2.1 -7.9 Transcriptional regulator, LysR family compare
PP_1025 -2.0 -8.8 2-isopropylmalate synthase compare
PP_0291 -2.0 -2.0 conserved protein of unknown function compare
PP_1109 -1.9 -11.0 Transcriptional regulator, GntR family compare
PP_1778 -1.8 -6.3 Lipopolysaccharide ABC export system, permease protein compare
PP_2378 -1.8 -2.7 Fe/S biogenesis protein NfuA compare
PP_4120 -1.8 -2.9 NADH-quinone oxidoreductase subunit B compare
PP_4004 -1.7 -4.2 DNA translocase FtsK compare
PP_2328 -1.7 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_0261 -1.7 -4.1 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2302 -1.7 -5.9 DNA-binding, ATP-dependent protease compare
PP_4060 -1.7 -10.9 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1912 -1.7 -4.4 Phosphate acyltransferase compare
PP_4700 -1.6 -2.2 pantothenate synthetase compare
PP_1198 -1.6 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2402 -1.6 -2.4 putative Sensor histidine kinase compare
PP_0949 -1.6 -5.6 putative ATP-binding protein UPF0042 compare
PP_5303 -1.6 -5.0 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5328 -1.5 -2.3 putative phosphate transport system permease protein compare
PP_0362 -1.5 -7.8 Biotin synthase compare
PP_1654 -1.4 -1.7 cysteine synthase B compare
PP_1734 -1.4 -3.6 Probable septum site-determining protein MinC compare
PP_5327 -1.4 -3.4 putative phosphate ABC transporter, permease subunit compare
PP_3924 -1.4 -2.3 conserved protein of unknown function compare
PP_2433 -1.3 -2.4 conserved protein of unknown function compare
PP_1111 -1.3 -5.1 putative Synthetase compare
PP_0127 -1.3 -4.2 Thiol:disulfide interchange protein compare
PP_2615 -1.3 -2.9 hemolysin-coregulated protein compare
PP_5533 -1.3 -2.0 conserved protein of unknown function compare
PP_4126 -1.2 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_0366 -1.2 -5.6 dethiobiotin synthetase compare
PP_1217 -1.2 -3.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2345 -1.2 -2.4 conserved exported protein of unknown function compare
PP_4984 -1.2 -6.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0232 -1.1 -1.7 ATP-binding taurine transporter subunit compare
PP_1216 -1.1 -2.2 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_2337 -1.1 -2.2 aconitate isomerase compare
PP_0364 -1.1 -5.8 pimeloyl-[acp] methyl ester esterase compare
PP_3417 -1.1 -4.5 D-gluconate transporter compare
PP_1493 -1.1 -2.1 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0406 -1.1 -2.0 Nucleotidyltransferase family protein compare
PP_4131 -1.1 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_5610 -1.1 -2.2 protein of unknown function compare
PP_5028 -1.1 -2.5 proline iminopeptidase compare
PP_0363 -1.1 -6.2 8-amino-7-oxononanoate synthase compare
PP_0164 -1.0 -5.0 conserved protein of unknown function compare
PP_4066 -1.0 -2.5 methylglutaconyl-CoA hydratase compare
PP_5114 -1.0 -1.9 putative adenine methyltransferase compare
PP_5329 -1.0 -1.6 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1764 -1.0 -2.4 Phosphoglycolate phosphatase 2 compare
PP_5597 -1.0 -2.1 conserved protein of unknown function compare
PP_4009 -1.0 -2.8 ATP-dependent Clp protease adapter protein ClpS compare
PP_5000 -1.0 -2.0 peptidase component of the ATP-dependent HslVU protease compare
PP_5453 -1.0 -1.6 conserved protein of unknown function compare
PP_2145 -1.0 -2.2 beta-N-acetylglucosaminidase compare
PP_4121 -1.0 -3.1 NADH-quinone oxidoreductase subunit C/D compare
PP_0719 -1.0 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1562 -1.0 -2.3 putative Phage terminase, small subunit compare
PP_4129 -1.0 -2.3 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1054 -1.0 -2.1 Type II secretion pathway protein XcpZ compare
PP_0365 -0.9 -5.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4342 -0.9 -2.9 flagellar synthesis regulator, putative ATPase compare
PP_5652 -0.9 -2.5 conserved protein of unknown function, phage origin compare
PP_4122 -0.9 -1.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4917 -0.9 -2.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_5104 -0.9 -5.4 thiazole synthase compare
PP_4130 -0.9 -2.8 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4828 -0.9 -1.4 Precorrin-8X methylmutase compare
PP_4695 -0.9 -4.9 Sensory box histidine kinase compare
PP_1013 -0.9 -4.5 Sensor histidine kinase compare
PP_0260 -0.9 -3.5 ADP-sugar pyrophosphorylase compare
PP_0378 -0.9 -5.0 Pyrroloquinoline-quinone synthase compare
PP_2107 -0.9 -1.4 conserved protein of unknown function compare
PP_4254 -0.9 -2.0 conserved protein of unknown function compare
PP_0833 -0.9 -1.0 queuine tRNA-ribosyltransferase compare
PP_1716 -0.9 -1.9 Transcriptional regulator, Cro/CI family compare
PP_4356 -0.8 -2.6 Flagellar protein FliO compare
PP_3790 -0.8 -5.0 diaminopimelate epimerase compare
PP_1317 -0.8 -2.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_5230 -0.8 -2.5 Tyrosine recombinase XerC compare
PP_4262 -0.8 -1.5 Cytochrome oxidase maturation protein, cbb3-type compare
PP_3899 -0.8 -1.7 conserved protein of unknown function, hicB family compare
PP_1926 -0.8 -2.3 putative phosphotyrosine-protein phosphatase compare
PP_1468 -0.8 -1.7 Tyrosine recombinase XerD compare
PP_1233 -0.8 -3.1 sulfurtransferase compare
PP_5198 -0.8 -2.1 conserved protein of unknown function compare
PP_5035 -0.8 -3.8 Histidine utilization repressor compare
PP_0376 -0.8 -4.6 Coenzyme PQQ synthesis protein E compare
PP_1353 -0.8 -1.7 conserved membrane protein of unknown function compare
PP_0910 -0.8 -3.0 conserved exported protein of unknown function compare
PP_0848 -0.8 -1.6 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1319 -0.8 -2.8 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_3903 -0.8 -1.6 conserved protein of unknown function compare
PP_5350 -0.8 -2.5 Transcriptional regulator, RpiR family compare
PP_4642 -0.8 -1.2 Cyclic diguanosine monophosphate-binding protein compare
PP_2714 -0.8 -3.0 Sensor histidine kinase compare
PP_4793 -0.8 -1.4 conserved protein of unknown function compare
PP_2152 -0.8 -2.0 glycerophosphoryl diester phosphodiesterase compare
PP_0379 -0.8 -4.2 Coenzyme PQQ synthesis protein B compare
PP_1906 -0.8 -2.6 ribosomal large subunit pseudouridine synthase C compare
PP_0339 -0.8 -0.5 Pyruvate dehydrogenase E1 component compare
PP_4471 -0.8 -2.4 Magnesium transporter compare
PP_1034 -0.8 -5.2 multicopper oxidase compare
PP_3411 -0.8 -1.1 conserved protein of unknown function compare
PP_1779 -0.8 -2.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0380 -0.8 -3.2 Coenzyme PQQ synthesis protein A compare
PP_0566 -0.8 -0.9 translation-related factor compare
PP_4782 -0.7 -3.2 Phosphomethylpyrimidine kinase compare
PP_0951 -0.7 -4.5 Ribosome hibernation promoting factor compare
PP_1011 -0.7 -4.1 glucokinase compare
PP_4482 -0.7 -1.9 Transcriptional regulator, AraC family compare
PP_3398 -0.7 -2.1 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4684 -0.7 -3.7 conserved protein of unknown function with kinase-like domain compare
PP_4880 -0.7 -4.4 exoribonuclease R compare
PP_2510 -0.7 -1.4 conserved protein of unknown function compare
PP_4213 -0.7 -2.1 putative dipeptidase compare
PP_5331 -0.7 -2.4 Long-chain acyl-CoA thioester hydrolase compare
PP_0909 -0.7 -4.2 conserved exported protein of unknown function compare
PP_1017 -0.7 -3.4 mannose/glucose ABC transporter, permease protein conserved
PP_3241 -0.7 -1.2 conserved exported protein of unknown function compare
PP_3365 -0.7 -1.2 Acetolactate synthase compare
PP_0913 -0.7 -3.6 conserved exported protein of unknown function compare
PP_1015 -0.7 -4.0 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_1428 -0.7 -1.3 Sigma factor AlgU negative regulatory protein compare
PP_3286 -0.7 -3.7 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_2304 -0.7 -3.6 putative Peptidyl-prolyl cis-trans isomerase D compare
PP_0789 -0.7 -2.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2280 -0.7 -1.4 conserved protein of unknown function compare
PP_4937 -0.7 -2.4 toluene tolerance protein compare
PP_3110 -0.7 -1.7 protein of unknown function compare
PP_2857 -0.7 -1.9 conserved exported protein of unknown function compare
PP_1589 -0.7 -3.9 uridylyltransferase compare
PP_4124 -0.7 -2.1 NADH-quinone oxidoreductase subunit G compare
PP_3265 -0.7 -2.2 putative phosphohydrolase of unknown function compare
PP_2820 -0.7 -2.1 HTH-type transcriptional regulator nfxB compare
PP_4406 -0.7 -1.4 conserved protein of unknown function compare
PP_1303 -0.7 -3.5 Sulfate adenylyltransferase subunit 2 compare
PP_1012 -0.7 -2.5 DNA-binding response regulator compare
PP_1548 -0.7 -1.8 conserved protein of unknown function compare
PP_4961 -0.6 -1.6 putative Lipoprotein compare
PP_0397 -0.6 -5.3 protein kinase compare
PP_5267 -0.6 -1.5 putative cytochrome c5 compare
PP_5274 -0.6 -1.7 conserved protein of unknown function compare
PP_4387 -0.6 -1.3 conserved exported protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms