Experiment set17IT043 for Pseudomonas putida KT2440

Compare to:

M9 minimal media_noCarbon with D-Glucose 10 mM; 30C; then outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.3 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0967 -6.1 -8.4 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4890 -5.9 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_1995 -5.7 -6.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1986 -5.6 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_4678 -5.5 -13.8 Ketol-acid reductoisomerase compare
PP_0966 -5.5 -9.2 Histidinol dehydrogenase compare
PP_0422 -5.4 -6.4 Indole-3-glycerol phosphate synthase compare
PP_1088 -5.4 -11.0 Argininosuccinate synthase compare
PP_4058 -5.3 -6.4 1,4-alpha-glucan branching enzyme compare
PP_0184 -5.3 -6.3 Argininosuccinate lyase compare
PP_0290 -5.3 -8.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5185 -5.2 -6.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4680 -5.1 -13.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1079 -5.1 -7.0 Ornithine carbamoyltransferase compare
PP_0083 -5.1 -5.0 tryptophan synthase beta chain compare
PP_0417 -5.0 -18.3 Anthranilate synthase component 1 compare
PP_2168 -4.9 -11.5 Transaldolase compare
PP_0082 -4.9 -5.8 tryptophan synthase alpha chain compare
PP_0292 -4.7 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1988 -4.7 -9.3 3-isopropylmalate dehydrogenase compare
PP_4909 -4.7 -5.6 phosphoserine phosphatase compare
PP_4679 -4.6 -7.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3511 -4.6 -9.3 Branched-chain-amino-acid aminotransferase compare
PP_0965 -4.4 -9.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4902 -4.4 -3.0 Oligoribonuclease compare
PP_0421 -4.3 -8.7 Anthranilate phosphoribosyltransferase compare
PP_5128 -4.3 -9.6 Dihydroxy-acid dehydratase compare
PP_5155 -4.2 -6.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1985 -4.1 -6.7 3-isopropylmalate dehydratase large subunit compare
PP_0289 -4.0 -8.2 Imidazoleglycerol-phosphate dehydratase compare
PP_5289 -3.8 -6.3 Acetylglutamate kinase compare
PP_5014 -3.7 -3.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_2327 -3.6 -6.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5015 -3.3 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1231 -3.2 -6.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4696 -3.1 -6.0 Nitrogen regulation protein NR(I) compare
PP_4008 -3.0 -8.3 ATP-dependent serine protease compare
PP_5097 -3.0 -14.5 homoserine O-acetyltransferase compare
PP_3999 -2.9 -7.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2371 -2.9 -6.9 Sulphite reductase hemoprotein, beta subunit compare
PP_5098 -2.7 -8.6 methionine biosynthesis protein MetW compare
PP_0420 -2.7 -7.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2378 -2.6 -3.5 Fe/S biogenesis protein NfuA compare
PP_5095 -2.6 -1.8 pyrroline-5-carboxylate reductase compare
PP_2402 -2.6 -3.0 putative Sensor histidine kinase compare
PP_0261 -2.6 -6.3 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_2001 -2.5 -7.5 O-succinylhomoserine sulfhydrylase compare
PP_2348 -2.3 -6.1 Sensor histidine kinase compare
PP_1022 -2.3 -6.0 glucose 6-phosphate-1-dehydrogenase compare
PP_1353 -2.2 -3.3 conserved membrane protein of unknown function compare
PP_0001 -2.2 -3.0 probable chromosome-partitioning protein compare
PP_0065 -2.1 -4.7 NAD-binding component of TrK potassium transporter compare
PP_0787 -2.1 -5.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4700 -1.9 -2.3 pantothenate synthetase compare
PP_5346 -1.9 -7.7 pyruvate carboxylase subunit B compare
PP_5303 -1.9 -4.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5347 -1.9 -8.3 pyruvate carboxylase subunit A compare
PP_1025 -1.9 -7.6 2-isopropylmalate synthase compare
PP_4120 -1.8 -3.0 NADH-quinone oxidoreductase subunit B compare
PP_1110 -1.8 -2.8 serine acetyltransferase compare
PP_1198 -1.8 -2.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1778 -1.7 -6.7 Lipopolysaccharide ABC export system, permease protein compare
PP_2328 -1.7 -4.7 Phosphoadenosine phosphosulfate reductase compare
PP_4253 -1.7 -3.5 cytochrome c oxidase subunit, cbb3-type compare
PP_4342 -1.7 -4.4 flagellar synthesis regulator, putative ATPase compare
PP_0393 -1.7 -2.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4060 -1.6 -11.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1109 -1.6 -9.9 Transcriptional regulator, GntR family compare
PP_2370 -1.6 -3.3 conserved protein of unknown function compare
PP_5348 -1.6 -7.6 Transcriptional regulator, LysR family compare
PP_1734 -1.5 -3.6 Probable septum site-determining protein MinC compare
PP_4124 -1.4 -3.7 NADH-quinone oxidoreductase subunit G compare
PP_4122 -1.4 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2302 -1.4 -5.0 DNA-binding, ATP-dependent protease compare
PP_0362 -1.4 -8.1 Biotin synthase compare
PP_4129 -1.4 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4917 -1.4 -4.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2433 -1.4 -2.3 conserved protein of unknown function compare
PP_0833 -1.4 -1.3 queuine tRNA-ribosyltransferase compare
PP_0291 -1.4 -1.7 conserved protein of unknown function compare
PP_0888 -1.3 -2.1 Photosynthetic apparatus regulatory protein RegA compare
PP_1733 -1.3 -3.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_4098 -1.3 -2.8 UvrABC system protein C compare
PP_0834 -1.3 -2.4 Sec translocation complex subunit YajC compare
PP_4642 -1.2 -1.7 Cyclic diguanosine monophosphate-binding protein compare
PP_4984 -1.2 -6.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4268 -1.2 -2.1 nucleoid-associated broad specificity regulator compare
PP_1111 -1.2 -5.4 putative Synthetase compare
PP_0366 -1.2 -5.4 dethiobiotin synthetase compare
PP_4261 -1.1 -3.8 cation-transporting P-type ATPase compare
PP_0949 -1.1 -3.6 putative ATP-binding protein UPF0042 compare
PP_1001 -1.1 -2.2 arginine deiminase compare
PP_5582 -1.0 -1.8 conserved protein of unknown function compare
PP_1912 -1.0 -3.7 Phosphate acyltransferase compare
PP_5486 -1.0 -2.2 conserved protein of unknown function compare
PP_0376 -1.0 -6.4 Coenzyme PQQ synthesis protein E compare
PP_0365 -1.0 -6.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4874 -1.0 -1.4 50S ribosomal protein L9 compare
PP_1233 -1.0 -3.1 sulfurtransferase compare
PP_5327 -1.0 -2.8 putative phosphate ABC transporter, permease subunit compare
PP_4829 -1.0 -2.1 putative precorrin-3B synthase compare
PP_1362 -1.0 -3.3 pyruvate kinase II compare
PP_4263 -1.0 -2.3 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_2132 -1.0 -3.5 Universal stress protein compare
PP_1994 -1.0 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_1824 -1.0 -2.1 Smr domain protein compare
PP_4993 -1.0 -3.7 Glutathione synthetase compare
PP_0378 -1.0 -5.0 Pyrroloquinoline-quinone synthase compare
PP_1128 -0.9 -3.1 OmpA family protein compare
PP_t10 -0.9 -2.0 tRNA-Pro compare
PP_1404 -0.9 -2.4 conserved protein of unknown function compare
PP_4130 -0.9 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4699 -0.9 -3.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3417 -0.9 -3.7 D-gluconate transporter compare
PP_4121 -0.9 -2.9 NADH-quinone oxidoreductase subunit C/D compare
PP_0841 -0.9 -3.1 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_4684 -0.9 -4.6 conserved protein of unknown function with kinase-like domain compare
PP_2118 -0.9 -1.9 conserved protein of unknown function compare
PP_5328 -0.9 -1.7 putative phosphate transport system permease protein compare
PP_2929 -0.9 -5.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_1317 -0.9 -2.2 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2145 -0.9 -2.2 beta-N-acetylglucosaminidase compare
PP_2144 -0.8 -2.6 Transcriptional regulator, TetR family compare
PP_5017 -0.8 -1.1 Sec-independent protein translocase protein TatB compare
PP_0406 -0.8 -1.9 Nucleotidyltransferase family protein compare
PP_0363 -0.8 -5.3 8-amino-7-oxononanoate synthase compare
PP_0364 -0.8 -4.8 pimeloyl-[acp] methyl ester esterase compare
PP_4136 -0.8 -1.4 Transcriptional regulator, LuxR family compare
PP_5028 -0.8 -2.7 proline iminopeptidase compare
PP_4208 -0.8 -4.2 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0232 -0.8 -1.4 ATP-binding taurine transporter subunit compare
PP_3539 -0.8 -2.6 putative Transcriptional regulator compare
PP_1503 -0.8 -2.4 conserved protein of unknown function compare
PP_1664 -0.8 -1.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_1011 -0.8 -4.6 glucokinase compare
PP_1304 -0.8 -4.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0377 -0.8 -1.6 coenzyme PQQ synthesis protein D compare
PP_2137 -0.8 -2.5 beta-ketoadipyl CoA thiolase, beta component compare
PP_4066 -0.8 -2.1 methylglutaconyl-CoA hydratase compare
PP_0381 -0.8 -4.5 Coenzyme PQQ synthesis protein F compare
PP_5232 -0.8 -1.0 conserved protein of unknown function compare
PP_4722 -0.8 -2.9 Transcription elongation factor GreA compare
PP_0125 -0.8 -2.3 putative cytochrome c-type protein compare
PP_1017 -0.8 -3.6 mannose/glucose ABC transporter, permease protein conserved
PP_4952 -0.8 -1.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0127 -0.8 -2.6 Thiol:disulfide interchange protein compare
PP_5707 -0.8 -3.3 conserved protein of unknown function compare
PP_2345 -0.7 -1.9 conserved exported protein of unknown function compare
PP_4480 -0.7 -4.2 arginine N-succinyltransferase, subunit alpha compare
PP_4793 -0.7 -1.1 conserved protein of unknown function compare
PP_4009 -0.7 -2.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_1016 -0.7 -4.9 mannose/glucose ABC transporter, permease protein conserved
PP_1716 -0.7 -1.8 Transcriptional regulator, Cro/CI family compare
PP_2336 -0.7 -1.9 aconitate hydratase 1 compare
PP_3726 -0.7 -1.3 Enoyl-CoA hydratase/isomerase family protein compare
PP_1589 -0.7 -4.5 uridylyltransferase compare
PP_5035 -0.7 -3.6 Histidine utilization repressor compare
PP_0978 -0.7 -1.8 conserved protein of unknown function compare
PP_3649 -0.7 -2.1 Transcriptional regulator, GntR family compare
PP_3891 -0.7 -2.5 conserved protein of unknown function compare
PP_1216 -0.7 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4937 -0.7 -2.4 toluene tolerance protein compare
PP_5350 -0.7 -2.1 Transcriptional regulator, RpiR family compare
PP_2820 -0.7 -1.9 HTH-type transcriptional regulator nfxB compare
PP_1015 -0.7 -3.9 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_1034 -0.7 -4.9 multicopper oxidase compare
PP_1217 -0.7 -2.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0339 -0.7 -0.8 Pyruvate dehydrogenase E1 component compare
PP_4507 -0.7 -4.3 potassium transporter compare
PP_4214 -0.7 -2.1 pyoverdine biosynthesis related protein compare
PP_3241 -0.7 -1.2 conserved exported protein of unknown function compare
PP_5456 -0.7 -1.2 conserved protein of unknown function compare
PP_5104 -0.7 -3.4 thiazole synthase compare
PP_5422 -0.7 -2.4 hypothetical protein compare
PP_4251 -0.7 -1.5 cytochrome c oxidase subunit, cbb3-type compare
PP_0345 -0.7 -2.5 putative Heptose kinase WapP compare
PP_5229 -0.7 -2.4 conserved protein of unknown function compare
PP_3110 -0.7 -1.6 protein of unknown function compare
PP_1678 -0.7 -1.9 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4895 -0.7 -1.4 tRNA dimethylallyltransferase compare
PP_0910 -0.7 -3.3 conserved exported protein of unknown function compare
PP_1513 -0.7 -2.0 Ribosomal RNA small subunit methyltransferase J compare
PP_2595 -0.7 -2.8 putative ABC transporter, permease/ATP-binding protein compare
PP_1779 -0.7 -2.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3833 -0.7 -2.8 Response regulator compare
PP_5007 -0.7 -1.7 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0951 -0.7 -3.5 Ribosome hibernation promoting factor compare
PP_1444 -0.7 -5.1 quinoprotein glucose dehydrogenase compare
PP_3506 -0.6 -2.2 Magnesium chelatase, subunit ChII compare
PP_5310 -0.6 -3.0 junction-specific ATP-dependent DNA helicase compare
PP_3935 -0.6 -2.5 conserved protein of unknown function compare
PP_1013 -0.6 -3.5 Sensor histidine kinase compare
PP_1662 -0.6 -2.8 conserved protein of unknown function compare
PP_0909 -0.6 -3.9 conserved exported protein of unknown function compare
PP_1560 -0.6 -2.2 conserved protein of unknown function compare
PP_2714 -0.6 -2.3 Sensor histidine kinase compare
PP_1387 -0.6 -2.5 Probable HTH-type transcriptional regulator TtgR compare
PP_5652 -0.6 -1.9 conserved protein of unknown function, phage origin compare
PP_2497 -0.6 -1.4 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms