Experiment set17IT042 for Pseudomonas putida KT2440

Compare to:

M9 minimal media_noCarbon with Trisodium citrate dihydrate 10 mM; 30C; then outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PP_0422 -6.9 -6.8 Indole-3-glycerol phosphate synthase compare
PP_4890 -6.7 -6.5 ATP phosphoribosyltransferase regulatory subunit compare
PP_1088 -6.4 -12.4 Argininosuccinate synthase compare
PP_0184 -6.4 -6.2 Argininosuccinate lyase compare
PP_4058 -6.3 -6.1 1,4-alpha-glucan branching enzyme compare
PP_0290 -6.2 -10.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -5.9 -15.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5185 -5.8 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1995 -5.7 -10.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0967 -5.7 -12.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5015 -5.7 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4678 -5.7 -18.2 Ketol-acid reductoisomerase compare
PP_0417 -5.4 -21.3 Anthranilate synthase component 1 compare
PP_4902 -5.3 -3.6 Oligoribonuclease compare
PP_3511 -5.3 -11.0 Branched-chain-amino-acid aminotransferase compare
PP_0966 -5.2 -13.1 Histidinol dehydrogenase compare
PP_5014 -5.2 -3.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_0289 -5.1 -10.7 Imidazoleglycerol-phosphate dehydratase compare
PP_1988 -5.1 -10.5 3-isopropylmalate dehydrogenase compare
PP_0965 -5.1 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0083 -5.1 -9.1 tryptophan synthase beta chain compare
PP_5289 -5.0 -6.9 Acetylglutamate kinase compare
PP_0293 -5.0 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -4.9 -4.8 3-isopropylmalate dehydratase small subunit compare
PP_4679 -4.8 -8.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0082 -4.7 -8.5 tryptophan synthase alpha chain compare
PP_4696 -4.6 -6.3 Nitrogen regulation protein NR(I) compare
PP_4909 -4.6 -8.8 phosphoserine phosphatase compare
PP_1420 -4.5 -10.0 Transcriptional regulatory protein tctD conserved
PP_0421 -4.4 -9.1 Anthranilate phosphoribosyltransferase compare
PP_3999 -4.4 -7.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2327 -4.4 -8.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1079 -4.2 -7.7 Ornithine carbamoyltransferase compare
PP_5128 -4.2 -8.7 Dihydroxy-acid dehydratase compare
PP_5155 -4.1 -6.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2371 -4.1 -8.7 Sulphite reductase hemoprotein, beta subunit compare
PP_1231 -3.8 -8.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1985 -3.8 -4.5 3-isopropylmalate dehydratase large subunit compare
PP_2370 -3.7 -5.2 conserved protein of unknown function compare
PP_2433 -3.7 -5.0 conserved protein of unknown function compare
PP_4126 -3.6 -2.5 NADH-quinone oxidoreductase subunit I compare
PP_1418 -3.5 -9.8 putative Tricarboxylate transport protein TctC conserved
PP_0787 -3.5 -6.4 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5095 -3.5 -2.4 pyrroline-5-carboxylate reductase compare
PP_1623 -3.5 -19.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_2378 -3.4 -4.6 Fe/S biogenesis protein NfuA compare
PP_2001 -3.4 -10.2 O-succinylhomoserine sulfhydrylase compare
PP_0420 -3.2 -9.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0292 -3.1 -2.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4008 -3.1 -10.3 ATP-dependent serine protease compare
PP_4695 -3.1 -11.4 Sensory box histidine kinase compare
PP_5098 -3.0 -9.4 methionine biosynthesis protein MetW compare
PP_1421 -3.0 -8.4 putative Sensor histidine kinase TctE conserved
PP_5328 -3.0 -3.5 putative phosphate transport system permease protein compare
PP_2402 -3.0 -4.0 putative Sensor histidine kinase compare
PP_5097 -3.0 -14.7 homoserine O-acetyltransferase compare
PP_4700 -2.9 -3.4 pantothenate synthetase compare
PP_1025 -2.7 -9.5 2-isopropylmalate synthase compare
PP_0291 -2.7 -2.2 conserved protein of unknown function compare
PP_1778 -2.4 -7.5 Lipopolysaccharide ABC export system, permease protein compare
PP_4262 -2.3 -3.3 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2328 -2.3 -5.9 Phosphoadenosine phosphosulfate reductase compare
PP_0362 -2.2 -11.5 Biotin synthase compare
PP_5303 -2.2 -4.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0719 -2.0 -1.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4895 -2.0 -3.0 tRNA dimethylallyltransferase compare
PP_4129 -2.0 -4.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0910 -1.9 -7.6 conserved exported protein of unknown function compare
PP_1110 -1.9 -4.6 serine acetyltransferase compare
PP_4122 -1.9 -2.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4131 -1.9 -6.4 NADH-quinone oxidoreductase subunit N compare
PP_1664 -1.9 -4.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_0949 -1.9 -7.4 putative ATP-binding protein UPF0042 compare
PP_4213 -1.8 -4.2 putative dipeptidase compare
PP_0339 -1.8 -1.3 Pyruvate dehydrogenase E1 component compare
PP_2088 -1.7 -3.3 RNA polymerase sigma factor SigX compare
PP_0261 -1.7 -6.4 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1428 -1.7 -2.8 Sigma factor AlgU negative regulatory protein compare
PP_5327 -1.7 -4.0 putative phosphate ABC transporter, permease subunit compare
PP_4121 -1.7 -5.7 NADH-quinone oxidoreductase subunit C/D compare
PP_1034 -1.7 -10.3 multicopper oxidase conserved
PP_4342 -1.6 -4.3 flagellar synthesis regulator, putative ATPase compare
PP_5329 -1.6 -2.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4130 -1.6 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1598 -1.6 -4.9 regulatory intramembrane protein RIP zinc protease compare
PP_1317 -1.6 -4.7 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4891 -1.6 -4.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4964 -1.6 -3.4 D-erythrose 4-phosphate dehydrogenase compare
PP_4724 -1.6 -1.1 Carbamoyl-phosphate synthase small chain compare
PP_1733 -1.5 -3.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_4124 -1.5 -4.7 NADH-quinone oxidoreductase subunit G compare
PP_0691 -1.5 -1.0 Glutamate 5-kinase compare
PP_0393 -1.5 -2.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0913 -1.5 -5.9 conserved exported protein of unknown function compare
PP_4684 -1.5 -7.3 conserved protein of unknown function with kinase-like domain compare
PP_1779 -1.4 -5.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2217 -1.4 -3.7 enoyl-CoA hydratase compare
PP_2302 -1.3 -5.4 DNA-binding, ATP-dependent protease compare
PP_4263 -1.3 -3.7 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0063 -1.3 -5.8 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4120 -1.3 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_4098 -1.3 -2.6 UvrABC system protein C compare
PP_1109 -1.3 -7.8 Transcriptional regulator, GntR family compare
PP_4060 -1.3 -9.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1318 -1.3 -5.4 Cytochrome b compare
PP_4892 -1.2 -5.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1111 -1.2 -6.2 putative Synthetase compare
PP_4917 -1.2 -4.3 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1233 -1.2 -4.3 sulfurtransferase compare
PP_4004 -1.2 -4.4 DNA translocase FtsK compare
PP_1416 -1.2 -8.3 putative Tricarboxylate transport protein TctA conserved
PP_4620 -1.2 -6.2 Fumarylacetoacetase compare
PP_4265 -1.2 -0.8 DNA-binding transcriptional dual regulator compare
PP_4782 -1.2 -3.8 Phosphomethylpyrimidine kinase compare
PP_2348 -1.1 -5.5 Sensor histidine kinase compare
PP_4613 -1.1 -8.7 outer membrane ferric citrate porin conserved
PP_5748 -1.1 -1.8 cytochrome c heme lyase subunit compare
PP_4261 -1.1 -3.5 cation-transporting P-type ATPase compare
PP_3946 -1.1 -2.2 HTH-type transcriptional repressor NicR compare
PP_1304 -1.1 -7.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4215 -1.1 -4.0 pyoverdine biosynthesis related protein compare
PP_4723 -1.1 -0.7 Carbamoyl-phosphate synthase large chain compare
PP_4251 -1.1 -3.4 cytochrome c oxidase subunit, cbb3-type compare
PP_2336 -1.1 -2.9 aconitate hydratase 1 compare
PP_1303 -1.1 -6.1 Sulfate adenylyltransferase subunit 2 compare
PP_5104 -1.1 -6.9 thiazole synthase compare
PP_4611 -1.1 -6.1 RNA polymerase sigma-70 factor, ECF subfamily conserved
PP_5652 -1.0 -3.4 conserved protein of unknown function, phage origin compare
PP_3790 -1.0 -6.5 diaminopimelate epimerase compare
PP_1319 -1.0 -3.6 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1763 -1.0 -2.8 putative oxidoreductase compare
PP_2720 -1.0 -1.9 conserved protein of unknown function compare
PP_0909 -1.0 -5.7 conserved exported protein of unknown function compare
PP_4699 -1.0 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5146 -1.0 -5.7 RNA pyrophosphohydrolase compare
PP_0951 -1.0 -6.0 Ribosome hibernation promoting factor compare
PP_0908 -1.0 -4.7 conserved exported protein of unknown function conserved
PP_0841 -0.9 -2.5 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_1198 -0.9 -1.6 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4204 -0.9 -3.2 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_3411 -0.9 -2.5 conserved protein of unknown function compare
PP_0065 -0.9 -2.6 NAD-binding component of TrK potassium transporter compare
PP_4546 -0.9 -3.0 ATP-dependent helicase HrpA compare
PP_0888 -0.9 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_1364 -0.9 -6.1 conserved exported protein of unknown function compare
PP_1217 -0.9 -3.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4214 -0.9 -2.0 pyoverdine biosynthesis related protein compare
PP_0484 -0.9 -3.9 transporter of an unknown substrate compare
PP_1237 -0.9 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4804 -0.9 -1.9 RlpA-like lipoprotein compare
PP_0834 -0.9 -2.3 Sec translocation complex subunit YajC compare
PP_0001 -0.8 -1.5 probable chromosome-partitioning protein compare
PP_5337 -0.8 -4.5 LysR family transcriptional regulator compare
PP_3365 -0.8 -1.5 Acetolactate synthase compare
PP_0395 -0.8 -6.5 putative type IV piliation protein compare
PP_3590 -0.8 -4.9 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4897 -0.8 -2.7 N-acetylmuramoyl-L-alanine amidase compare
PP_2475 -0.8 -4.1 Transcriptional regulator, TetR family compare
PP_3903 -0.8 -2.3 conserved protein of unknown function compare
PP_3649 -0.8 -4.0 Transcriptional regulator, GntR family compare
PP_1906 -0.8 -2.8 ribosomal large subunit pseudouridine synthase C compare
PP_0593 -0.8 -1.2 putative ribosome-binding factor compare
PP_5582 -0.8 -1.7 conserved protein of unknown function compare
PP_1678 -0.8 -3.3 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_4396 -0.8 -3.2 conserved protein of unknown function compare
PP_0396 -0.8 -6.0 conserved protein of unknown function compare
PP_4066 -0.8 -2.1 methylglutaconyl-CoA hydratase compare
PP_2820 -0.8 -2.2 HTH-type transcriptional regulator nfxB compare
PP_3603 -0.8 -4.6 Transcriptional regulator, GntR family compare
PP_0846 -0.8 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_0397 -0.8 -6.3 protein kinase compare
PP_2214 -0.8 -2.3 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_1826 -0.8 -2.2 Hydrolase, isochorismatase family compare
PP_5007 -0.7 -1.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5035 -0.7 -4.4 Histidine utilization repressor compare
PP_4343 -0.7 -2.9 Flagellar biosynthesis protein FlhF compare
PP_1348 -0.7 -4.4 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_3789 -0.7 -4.5 putative Efflux transporter compare
PP_4471 -0.7 -3.3 Magnesium transporter compare
PP_0164 -0.7 -3.8 conserved protein of unknown function compare
PP_5000 -0.7 -1.7 peptidase component of the ATP-dependent HslVU protease compare
PP_0345 -0.7 -3.2 putative Heptose kinase WapP compare
PP_2379 -0.7 -3.8 putative cytochrome oxidase biogenesis protein compare
PP_4880 -0.7 -4.9 exoribonuclease R compare
PP_0147 -0.7 -5.7 Citrate transporter conserved
PP_2152 -0.7 -1.6 glycerophosphoryl diester phosphodiesterase compare
PP_2144 -0.7 -2.4 Transcriptional regulator, TetR family compare
PP_0735 -0.7 -1.2 molybdopterin-synthase adenylyltransferase compare
PP_1078 -0.7 -4.9 putative ABC transporter, ATP-binding protein compare
PP_0406 -0.7 -1.4 Nucleotidyltransferase family protein compare
PP_0832 -0.7 -2.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5217 -0.7 -5.8 Polyphosphate kinase compare
PP_t10 -0.7 -1.8 tRNA-Pro compare
PP_2804 -0.7 -3.0 Hydrolase, alpha/beta fold family compare
PP_1783 -0.7 -1.4 dTDP-glucose pyrophosphorylase compare
PP_4320 -0.7 -2.5 cytochrome c-type biogenesis protein compare
PP_1419 -0.7 -2.5 tricarboxylate-specific outer membrane porin conserved
PP_4264 -0.7 -3.9 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_3833 -0.7 -3.2 Response regulator compare
PP_4394 -0.7 -3.7 flagella basal body P-ring formation protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For carbon source Trisodium citrate dihydrate across organisms