Experiment set17IT042 for Pseudomonas putida KT2440

Compare to:

M9 minimal media_noCarbon with Trisodium citrate dihydrate 10 mM; 30C; then outgrowth in LB

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +4.2 37.8 Sensor protein GacS compare
PP_4099 +4.1 28.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1656 +2.3 14.4 ATP:GTP 3'-pyrophosphotransferase compare
PP_1655 +2.1 10.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4171 +2.1 16.5 conserved exported protein of unknown function compare
PP_2889 +1.5 6.9 putative Transmembrane regulator PrtR compare
PP_4173 +1.3 10.1 Sensor histidine kinase/response regulator compare
PP_5053 +1.2 8.3 Protein-export protein SecB compare
PP_1113 +1.1 9.7 Pyridoxal-phosphate dependent enzyme family protein compare
PP_4172 +1.1 7.0 conserved exported protein of unknown function compare
PP_2387 +1.1 5.5 conserved protein of unknown function compare
PP_2880 +0.8 2.4 Transcriptional regulator, TetR family compare
PP_4799 +0.7 0.5 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2390 +0.7 5.4 Transcriptional regulator, LysR family compare
PP_5248 +0.7 2.1 putative hydrolase compare
PP_1774 +0.7 2.2 conserved exported protein of unknown function compare
PP_0630 +0.7 1.6 DNA gyrase inhibitor YacG compare
PP_2899 +0.7 2.4 conserved exported protein of unknown function compare
PP_4296 +0.7 2.3 conserved exported protein of unknown function compare
PP_4100 +0.7 3.1 Transcriptional regulator, Cro/CI family compare
PP_4217 +0.6 6.2 outer membrane ferripyoverdine receptor FpvA, TonB-dependent compare
PP_3926 +0.6 1.4 short-chain dehydrogenase compare
PP_3821 +0.6 5.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4340 +0.6 3.4 response regulator for chemotactic signal transduction compare
PP_1112 +0.6 4.0 conserved membrane protein of unknown function compare
PP_4424 +0.6 2.2 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_3831 +0.6 2.8 conserved protein of unknown function compare
PP_4940 +0.6 4.3 Putative glycosyltransferase compare
PP_3840 +0.6 1.6 conserved protein of unknown function compare
PP_4999 +0.6 0.4 dihydroorotase-like protein compare
PP_3037 +0.6 2.8 C4-type zinc finger protein, DksA/TraR family compare
PP_4336 +0.5 3.9 flagellar motor rotation protein compare
PP_4789 +0.5 2.8 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_2087 +0.5 2.4 CmpX protein compare
PP_2389 +0.5 4.0 conserved protein of unknown function compare
PP_4338 +0.5 3.6 Chemotaxis histidine kinase CheA compare
PP_1761 +0.5 4.3 diguanylate cyclase with phosphodiesterase domain compare
PP_3043 +0.5 2.4 conserved protein of unknown function compare
PP_5223 +0.5 2.6 regulator of nucleotide diphosphokinase compare
PP_4073 +0.5 1.9 conserved exported protein of unknown function compare
PP_4329 +0.5 2.0 FlhB domain protein compare
PP_5701 +0.5 0.8 conserved protein of unknown function compare
PP_2547 +0.5 2.6 Transcriptional regulator, LysR family compare
PP_4199 +0.5 1.1 putative Lipoprotein compare
PP_1697 +0.5 2.3 transcriptional regulator, GntR family compare
PP_0945 +0.5 1.8 conserved protein of unknown function compare
PP_4364 +0.5 2.9 putative Anti-sigma F factor antagonist compare
PP_2442 +0.5 1.9 conserved protein of unknown function, DUF480 family compare
PP_2274 +0.5 2.3 conserved protein of unknown function compare
PP_5471 +0.5 1.6 putative response regulator receiver protein compare
PP_4734 +0.4 3.4 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_5621 +0.4 1.8 protein of unknown function compare
PP_0367 +0.4 1.9 conserved protein of unknown function compare
PP_4335 +0.4 3.6 flagellar motor protein compare
PP_4393 +0.4 3.0 putative chemotaxis protein compare
PP_4392 +0.4 3.0 chemotaxis protein methyltransferase compare
PP_2107 +0.4 1.3 conserved protein of unknown function compare
PP_1536 +0.4 2.3 conserved protein of unknown function compare
PP_5008 +0.4 1.1 Poly granule-associated protein compare
PP_2504 +0.4 2.1 putative tautomerase K2 compare
PP_0185 +0.4 3.3 Positive alginate biosynthesis regulatory protein compare
PP_5110 +0.4 1.8 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4339 +0.4 2.7 Protein phosphatase CheZ compare
PP_0306 +0.4 1.9 conserved protein of unknown function compare
PP_0972 +0.4 2.3 UPF0213 protein PP_0972 compare
PP_4133 +0.4 1.2 Transcriptional regulator-related protein compare
PP_1397 +0.4 2.1 conserved protein of unknown function compare
PP_3052 +0.4 1.1 conserved protein of unknown function compare
PP_2525 +0.4 2.0 conserved protein of unknown function compare
PP_0762 +0.4 2.5 Glycerate dehydrogenase compare
PP_4373 +0.4 3.4 Transcriptional regulator FleQ compare
PP_1147 +0.4 2.4 conserved protein of unknown function compare
PP_5675 +0.4 2.0 conserved protein of unknown function compare
PP_5505 +0.4 1.0 conserved transmembrane protein of unknown function compare
PP_2847 +0.4 1.4 Urease accessory protein UreJ compare
PP_4997 +0.4 1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4521 +0.4 3.3 putative aerotaxis receptor compare
PP_4861 +0.4 2.3 conserved protein of unknown function compare
PP_4808 +0.4 1.5 23S rRNA m3psi1915 methyltransferase compare
PP_5575 +0.4 1.3 conserved protein of unknown function compare
PP_5247 +0.4 2.2 conserved protein of unknown function compare
PP_1137 +0.4 3.0 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_2458 +0.4 3.2 ribokinase compare
PP_5359 +0.4 1.0 CobW/P47K family protein compare
PP_1140 +0.4 3.1 branched chain amino acid transporter - permease subunit compare
PP_5051 +0.4 1.2 conserved protein of unknown function compare
PP_0919 +0.4 1.9 conserved protein of unknown function compare
PP_0122 +0.4 0.9 conserved exported protein of unknown function compare
PP_1803 +0.4 3.3 UDP-sugar epimerase compare
PP_2883 +0.4 1.2 conserved protein of unknown function compare
PP_1453 +0.4 2.9 putative NUDIX hydrolase with low 3-phosphohydroxypyruvate phosphatase activity compare
PP_1375 +0.4 2.9 transcription regulatory protein (pca regulon) compare
PP_1048 +0.4 1.5 putative protein secretion protein for export compare
PP_1451 +0.4 2.2 conserved exported protein of unknown function compare
PP_2305 +0.4 2.2 conserved protein of unknown function compare
PP_1139 +0.4 3.1 branched chain amino acid transporter - permease subunit compare
PP_4689 +0.4 2.0 Heme/hemin ABC transporter, periplasmic heme/hemin-binding protein compare
PP_1554 +0.4 1.6 conserved protein of unknown function compare
PP_4778 +0.3 2.0 23S rRNA pseudouridine 2457 synthase compare
PP_0946 +0.3 2.2 superoxide dismutase (Mn) compare
PP_0022 +0.3 0.7 hypothetical protein compare
PP_2361 +0.3 2.3 putative chaperone protein compare
PP_5190 +0.3 1.9 Type II secretion system protein compare
PP_5673 +0.3 2.3 putative D-alanine--D-alanine ligase compare
PP_0698 +0.3 2.3 Transcriptional regulator, LysR family compare
PP_1935 +0.3 1.5 Transcriptional regulator, Cro/CI family compare
PP_0673 +0.3 0.6 conserved protein of unknown function compare
PP_0398 +0.3 0.8 Thiosulfate sulfurtransferase GlpE compare
PP_4246 +0.3 2.7 Periplasmic binding protein compare
PP_1523 +0.3 1.9 conserved protein of unknown function compare
PP_2231 +0.3 0.6 putative permease of the drug/metabolite transporter (DMT) superfamily compare
PP_2362 +0.3 2.9 putative usher protein compare
PP_5520 +0.3 2.0 conserved protein of unknown function compare
PP_3326 +0.3 2.0 conserved exported protein of unknown function compare
PP_5469 +0.3 1.4 putative SAM-dependent methyltransferase compare
PP_3634 +0.3 1.8 putative acetyltransferase, GNAT family compare
PP_4534 +0.3 1.9 conserved protein of unknown function compare
PP_5598 +0.3 1.1 conserved protein of unknown function compare
PP_2320 +0.3 2.8 conserved exported protein of unknown function compare
PP_5324 +0.3 1.2 Response regulator compare
PP_3198 +0.3 1.3 Ferredoxin, 2Fe-2S compare
PP_4108 +0.3 2.0 2-aminoadipate transaminase (EC 2.6.1.39) (from data) compare
PP_5238 +0.3 2.0 conserved protein of unknown function compare
PP_4334 +0.3 2.7 ParA family protein compare
PP_4084 +0.3 1.9 conserved protein of unknown function compare
PP_5339 +0.3 1.3 transcriptional regulator, ornithine utilization compare
PP_3358 +0.3 2.1 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_2990 +0.3 2.0 Transcriptional regulator, MerR family compare
PP_3714 +0.3 2.1 Muconolactone Delta-isomerase compare
PP_3760 +0.3 2.3 putative methyltransferase compare
PP_0802 +0.3 1.9 putative chemotaxis protein compare
PP_2900 +0.3 1.0 conserved protein of unknown function compare
PP_3864 +0.3 2.0 putative Phage FluMu DNA circulation protein compare
PP_3519 +0.3 0.7 putative Lipoprotein compare
PP_0923 +0.3 1.9 Acyltransferase compare
PP_1999 +0.3 1.1 membrane protein required for colicin V production compare
PP_0653 +0.3 0.8 conserved protein of unknown function compare
PP_5278 +0.3 1.9 4-guanidinobutyraldehyde dehydrogenase compare
PP_2359 +0.3 2.1 putative Type 1 pili subunit CsuA/B protein compare
PP_1404 +0.3 0.6 conserved protein of unknown function compare
PP_2426 +0.3 1.1 coniferyl alcohol dehydrogenase compare
PP_1844 +0.3 1.5 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
PP_2082 +0.3 2.4 phosphoenolpyruvate synthetase compare
PP_4218 +0.3 1.8 Lipase/esterase family protein compare
PP_3473 +0.3 1.7 curli secretion and assembly outer membrane associated component compare
PP_5699 +0.3 1.3 putative iron uptake protein compare
PP_5486 +0.3 1.0 conserved protein of unknown function compare
PP_2357 +0.3 2.1 putative Type 1 pili protein CsuB compare
PP_1300 +0.3 1.6 putative amino acid ABC transporter - ATP-binding subunit compare
PP_0674 +0.3 2.3 ADP/ATP ratio sensor and inhibitor of translation compare
PP_1510 +0.3 2.0 putative Carboxyvinyl-carboxyphosphonate phosphorylmutase compare
PP_1142 +0.3 0.5 conserved protein of unknown function compare
PP_2337 +0.3 0.8 aconitate isomerase compare
PP_2280 +0.3 0.9 conserved protein of unknown function compare
PP_2737 +0.3 0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4051 +0.3 2.1 malto-oligosyltrehalose trehalohydrolase compare
PP_1141 +0.3 2.1 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_1004 +0.3 1.3 conserved protein of unknown function compare
PP_2409 +0.3 1.2 cobalt-zinc-cadmium resistance protein compare
PP_0803 +0.3 2.2 Protein secretion ABC efflux system, membrane fusion protein compare
PP_4631 +0.3 1.3 conserved protein of unknown function compare
PP_1236 +0.3 1.7 putative Glycine cleavage system transcriptional repressor compare
PP_4290 +0.3 1.9 uric acid permease compare
PP_4707 +0.3 1.3 OsmY-related protein compare
PP_2717 +0.3 1.6 arsenite/antimonite transporter compare
PP_2947 +0.3 1.8 putative Transcriptional regulator MvaT, P16 subunit compare
PP_1066 +0.3 1.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_4531 +0.3 1.3 conserved exported protein of unknown function compare
PP_2365 +0.3 1.6 Transcriptional regulator, AraC family compare
PP_4208 +0.3 2.0 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0163 +0.3 2.1 putative transcriptional regulator compare
PP_2724 +0.3 1.7 conserved protein of unknown function compare
PP_3512 +0.3 1.4 conserved membrane protein of unknown function compare
PP_2622 +0.3 1.0 conserved protein of unknown function compare
PP_4226 +0.3 1.5 conserved protein of unknown function compare
PP_2575 +0.3 1.1 conserved exported protein of unknown function compare
PP_3307 +0.3 1.1 conserved protein of unknown function compare
PP_1739 +0.3 0.9 conserved membrane protein of unknown function compare
PP_5669 +0.3 1.6 ABC transporter related compare
PP_3899 +0.3 1.1 conserved protein of unknown function, hicB family compare
PP_0947 +0.3 1.6 conserved membrane protein of unknown function compare
PP_5533 +0.3 0.8 conserved protein of unknown function compare
PP_4490 +0.3 1.7 phenylalanine-4-hydroxylase compare
PP_5038 +0.3 1.3 conserved lipoprotein of unknown function compare
PP_5395 +0.3 2.1 conserved protein of unknown function compare
PP_0899 +0.3 1.8 putative Ferredoxin reductase compare
PP_4301 +0.3 1.2 Pyruvate kinase compare
PP_5361 +0.3 2.1 47 kDa protein compare
PP_0294 +0.3 1.0 Choline / carnitine / glycine betaine ABC transporter, ATPase component (from data) compare
PP_1164 +0.3 1.1 Transcriptional regulator, LysR family compare
PP_3904 +0.3 1.0 conserved protein of unknown function compare
PP_2437 +0.3 1.9 putative Acyl-CoA dehydrogenase compare
PP_1799 +0.3 2.1 GDP-mannose 4,6-dehydratase compare
PP_2229 +0.3 1.1 putative K(+)/H(+) antiporter subunit C compare
PP_4038 +0.3 1.5 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PP_1068 +0.3 1.3 glutamate / aspartate ABC transporter - ATP binding subunit compare
PP_5548 +0.3 0.9 protein of unknown function compare
PP_0703 +0.3 1.1 putative Transmembrane sensor compare
PP_1544 +0.3 1.0 conserved protein of unknown function compare
PP_4913 +0.3 1.2 conserved protein of unknown function compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For carbon source Trisodium citrate dihydrate across organisms