Experiment set17IT041 for Pseudomonas putida KT2440

Compare to:

M9 minimal media_noCarbon with Trisodium citrate dihydrate 10 mM; 30C; then outgrowth in LB

200 most important genes:

  gene name fitness t score description  
PP_4890 -7.2 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_1985 -7.0 -4.8 3-isopropylmalate dehydratase large subunit compare
PP_0967 -7.0 -8.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0422 -6.7 -6.5 Indole-3-glycerol phosphate synthase compare
PP_5289 -6.6 -4.6 Acetylglutamate kinase compare
PP_1088 -6.4 -10.8 Argininosuccinate synthase compare
PP_5185 -6.3 -6.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -6.0 -10.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1995 -6.0 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4058 -5.9 -8.1 1,4-alpha-glucan branching enzyme compare
PP_0082 -5.8 -5.7 tryptophan synthase alpha chain compare
PP_4678 -5.6 -16.5 Ketol-acid reductoisomerase compare
PP_0966 -5.5 -11.8 Histidinol dehydrogenase compare
PP_4680 -5.5 -15.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -5.5 -20.5 Anthranilate synthase component 1 compare
PP_4909 -5.3 -6.4 phosphoserine phosphatase compare
PP_0292 -5.3 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1079 -5.2 -8.6 Ornithine carbamoyltransferase compare
PP_0184 -5.2 -9.3 Argininosuccinate lyase compare
PP_1988 -5.1 -9.9 3-isopropylmalate dehydrogenase compare
PP_0083 -5.0 -7.7 tryptophan synthase beta chain compare
PP_0965 -4.9 -11.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5155 -4.9 -7.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0293 -4.9 -4.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2371 -4.8 -7.9 Sulphite reductase hemoprotein, beta subunit compare
PP_4679 -4.7 -8.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0787 -4.7 -5.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0421 -4.6 -8.3 Anthranilate phosphoribosyltransferase compare
PP_4902 -4.4 -4.3 Oligoribonuclease compare
PP_0289 -4.3 -9.2 Imidazoleglycerol-phosphate dehydratase compare
PP_4008 -4.3 -9.6 ATP-dependent serine protease compare
PP_3511 -4.3 -9.2 Branched-chain-amino-acid aminotransferase compare
PP_1231 -4.3 -8.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1986 -4.2 -4.9 3-isopropylmalate dehydratase small subunit compare
PP_4696 -4.0 -6.7 Nitrogen regulation protein NR(I) compare
PP_5128 -3.9 -9.5 Dihydroxy-acid dehydratase compare
PP_3999 -3.8 -8.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1421 -3.8 -9.7 putative Sensor histidine kinase TctE conserved
PP_5014 -3.7 -4.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_2402 -3.6 -3.5 putative Sensor histidine kinase compare
PP_1418 -3.6 -12.2 putative Tricarboxylate transport protein TctC conserved
PP_2370 -3.6 -3.9 conserved protein of unknown function compare
PP_5095 -3.4 -2.3 pyrroline-5-carboxylate reductase compare
PP_1623 -3.3 -17.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_0735 -3.2 -3.1 molybdopterin-synthase adenylyltransferase compare
PP_0420 -3.2 -9.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5097 -3.1 -13.8 homoserine O-acetyltransferase compare
PP_1420 -3.1 -8.5 Transcriptional regulatory protein tctD conserved
PP_5015 -2.9 -3.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1025 -2.9 -10.2 2-isopropylmalate synthase compare
PP_2001 -2.8 -11.5 O-succinylhomoserine sulfhydrylase compare
PP_4695 -2.8 -9.9 Sensory box histidine kinase compare
PP_5098 -2.8 -9.1 methionine biosynthesis protein MetW compare
PP_2433 -2.8 -2.3 conserved protein of unknown function compare
PP_1778 -2.8 -9.0 Lipopolysaccharide ABC export system, permease protein compare
PP_2327 -2.7 -6.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4131 -2.7 -6.0 NADH-quinone oxidoreductase subunit N compare
PP_4342 -2.6 -5.9 flagellar synthesis regulator, putative ATPase compare
PP_4126 -2.6 -2.5 NADH-quinone oxidoreductase subunit I compare
PP_4129 -2.5 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4122 -2.5 -2.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0719 -2.4 -1.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1110 -2.4 -6.3 serine acetyltransferase compare
PP_0261 -2.4 -5.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4120 -2.3 -3.9 NADH-quinone oxidoreductase subunit B compare
PP_0291 -2.3 -3.4 conserved protein of unknown function compare
PP_4268 -2.3 -2.3 nucleoid-associated broad specificity regulator compare
PP_4124 -2.2 -5.2 NADH-quinone oxidoreductase subunit G compare
PP_1215 -2.1 -1.8 Crossover junction endodeoxyribonuclease RuvC compare
PP_1198 -2.1 -4.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_5303 -2.1 -6.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2378 -2.1 -3.1 Fe/S biogenesis protein NfuA compare
PP_4892 -2.0 -7.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1319 -2.0 -6.1 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0362 -2.0 -11.6 Biotin synthase compare
PP_0393 -1.9 -3.1 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2302 -1.9 -6.4 DNA-binding, ATP-dependent protease compare
PP_1237 -1.8 -2.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1034 -1.8 -10.8 multicopper oxidase conserved
PP_2328 -1.8 -5.7 Phosphoadenosine phosphosulfate reductase compare
PP_4895 -1.7 -2.8 tRNA dimethylallyltransferase compare
PP_4804 -1.7 -2.3 RlpA-like lipoprotein compare
PP_1779 -1.7 -6.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0913 -1.7 -6.3 conserved exported protein of unknown function compare
PP_4964 -1.6 -3.3 D-erythrose 4-phosphate dehydrogenase compare
PP_0406 -1.6 -3.3 Nucleotidyltransferase family protein compare
PP_2337 -1.6 -3.0 aconitate isomerase compare
PP_0910 -1.6 -6.5 conserved exported protein of unknown function compare
PP_1734 -1.6 -4.0 Probable septum site-determining protein MinC compare
PP_4782 -1.5 -4.5 Phosphomethylpyrimidine kinase compare
PP_1598 -1.5 -4.4 regulatory intramembrane protein RIP zinc protease compare
PP_1664 -1.5 -3.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_0339 -1.5 -1.4 Pyruvate dehydrogenase E1 component compare
PP_1318 -1.4 -5.8 Cytochrome b compare
PP_2348 -1.4 -4.9 Sensor histidine kinase compare
PP_4700 -1.4 -2.7 pantothenate synthetase compare
PP_0834 -1.4 -2.3 Sec translocation complex subunit YajC compare
PP_0164 -1.4 -7.1 conserved protein of unknown function compare
PP_5327 -1.4 -3.7 putative phosphate ABC transporter, permease subunit compare
PP_4471 -1.4 -4.2 Magnesium transporter compare
PP_4724 -1.4 -1.0 Carbamoyl-phosphate synthase small chain compare
PP_1111 -1.4 -6.9 putative Synthetase compare
PP_t29 -1.4 -2.9 tRNA-Ala compare
PP_4684 -1.4 -5.7 conserved protein of unknown function with kinase-like domain compare
PP_4917 -1.4 -4.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0691 -1.4 -0.9 Glutamate 5-kinase compare
PP_1763 -1.4 -2.9 putative oxidoreductase compare
PP_1428 -1.4 -1.9 Sigma factor AlgU negative regulatory protein compare
PP_4004 -1.3 -4.3 DNA translocase FtsK compare
PP_0908 -1.3 -7.1 conserved exported protein of unknown function conserved
PP_4891 -1.3 -4.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4060 -1.3 -9.5 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1317 -1.3 -4.0 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4611 -1.3 -5.4 RNA polymerase sigma-70 factor, ECF subfamily conserved
PP_3730 -1.3 -3.5 Transcriptional regulatory protein AruR compare
PP_4066 -1.3 -2.8 methylglutaconyl-CoA hydratase compare
PP_4613 -1.3 -8.6 outer membrane ferric citrate porin conserved
PP_0401 -1.3 -2.5 Ribosomal RNA small subunit methyltransferase A compare
PP_0951 -1.2 -5.2 Ribosome hibernation promoting factor compare
PP_1417 -1.2 -5.3 putative Tricarboxylate transport protein TctB conserved
PP_5028 -1.2 -3.8 proline iminopeptidase compare
PP_2088 -1.2 -3.2 RNA polymerase sigma factor SigX compare
PP_4121 -1.2 -4.1 NADH-quinone oxidoreductase subunit C/D compare
PP_1109 -1.2 -7.0 Transcriptional regulator, GntR family compare
PP_0909 -1.2 -7.1 conserved exported protein of unknown function compare
PP_4482 -1.1 -2.7 Transcriptional regulator, AraC family compare
PP_4726 -1.1 -2.8 Chaperone protein DnaJ compare
PP_3603 -1.1 -6.1 Transcriptional regulator, GntR family compare
PP_4642 -1.1 -1.7 Cyclic diguanosine monophosphate-binding protein compare
PP_1364 -1.1 -6.8 conserved exported protein of unknown function compare
PP_1733 -1.1 -2.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_4263 -1.1 -2.6 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_0949 -1.1 -4.6 putative ATP-binding protein UPF0042 compare
PP_4620 -1.1 -5.6 Fumarylacetoacetase compare
PP_1654 -1.0 -1.7 cysteine synthase B compare
PP_2214 -1.0 -2.8 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0126 -1.0 -3.1 Cytochrome c4 compare
PP_0152 -1.0 -2.7 conserved exported protein of unknown function compare
PP_5329 -1.0 -2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3649 -1.0 -3.5 Transcriptional regulator, GntR family compare
PP_5328 -1.0 -2.0 putative phosphate transport system permease protein compare
PP_4130 -1.0 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4937 -1.0 -3.3 toluene tolerance protein compare
PP_0484 -1.0 -4.2 transporter of an unknown substrate compare
PP_4560 -1.0 -2.1 putative Ribonuclease BN compare
PP_4723 -1.0 -0.7 Carbamoyl-phosphate synthase large chain compare
PP_0397 -0.9 -7.7 protein kinase compare
PP_2475 -0.9 -3.9 Transcriptional regulator, TetR family compare
PP_1416 -0.9 -6.0 putative Tricarboxylate transport protein TctA conserved
PP_4693 -0.9 -2.3 RNA polymerase-binding transcription factor DksA compare
PP_4204 -0.9 -3.1 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4847 -0.9 -2.5 chaperone modulatory of CbpA co-chaperone protein compare
PP_0396 -0.9 -6.7 conserved protein of unknown function compare
PP_2215 -0.9 -3.4 acetyl-CoA acetyltransferase compare
PP_1994 -0.9 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_1397 -0.9 -2.8 conserved protein of unknown function compare
PP_0395 -0.9 -6.3 putative type IV piliation protein compare
PP_5146 -0.9 -4.8 RNA pyrophosphohydrolase compare
PP_4379 -0.9 -2.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4356 -0.9 -2.7 Flagellar protein FliO compare
PP_0809 -0.9 -5.5 disulfide bond formation protein B compare
PP_2152 -0.9 -1.7 glycerophosphoryl diester phosphodiesterase compare
PP_2820 -0.9 -2.6 HTH-type transcriptional regulator nfxB compare
PP_5027 -0.8 -2.0 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4993 -0.8 -3.8 Glutathione synthetase compare
PP_2794 -0.8 -2.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3519 -0.8 -1.3 putative Lipoprotein compare
PP_5216 -0.8 -1.7 exopolyphosphatase compare
PP_4528 -0.8 -2.2 conserved protein of unknown function compare
PP_1303 -0.8 -3.7 Sulfate adenylyltransferase subunit 2 compare
PP_1304 -0.8 -4.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0888 -0.8 -2.0 Photosynthetic apparatus regulatory protein RegA compare
PP_2945 -0.8 -3.6 putative sensor histidine kinase/response regulator compare
PP_4386 -0.8 -3.7 flagellar basal-body rod protein FlgF compare
PP_1233 -0.8 -3.3 sulfurtransferase compare
PP_2336 -0.8 -2.2 aconitate hydratase 1 compare
PP_0001 -0.8 -0.9 probable chromosome-partitioning protein compare
PP_0345 -0.8 -2.5 putative Heptose kinase WapP compare
PP_4261 -0.8 -3.1 cation-transporting P-type ATPase compare
PP_0165 -0.8 -6.6 GGDEF domain protein compare
PP_4519 -0.8 -6.3 Agglutination protein compare
PP_1493 -0.8 -2.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2030 -0.8 -2.4 conserved protein of unknown function compare
PP_0260 -0.8 -2.9 ADP-sugar pyrophosphorylase compare
PP_4343 -0.8 -2.7 Flagellar biosynthesis protein FlhF compare
PP_1217 -0.7 -3.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5104 -0.7 -4.3 thiazole synthase compare
PP_5652 -0.7 -2.4 conserved protein of unknown function, phage origin compare
PP_4828 -0.7 -0.8 Precorrin-8X methylmutase compare
PP_0246 -0.7 -2.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_5227 -0.7 -3.4 diaminopimelate decarboxylase compare
PP_5202 -0.7 -1.8 putative cell division protein compare
PP_4394 -0.7 -3.3 flagella basal body P-ring formation protein compare
PP_2379 -0.7 -3.5 putative cytochrome oxidase biogenesis protein compare
PP_4575 -0.7 -2.5 Urea amidolyase-related protein compare
PP_0832 -0.7 -2.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4285 -0.7 -2.7 5-hydroxyisourate hydrolase compare
PP_4215 -0.7 -3.2 pyoverdine biosynthesis related protein compare
PP_0167 -0.7 -6.3 Toxin secretion ATP-binding protein compare
PP_4532 -0.7 -1.5 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For carbon source Trisodium citrate dihydrate across organisms