Experiment set17IT039 for Pseudomonas putida KT2440

Compare to:

Soil Extract with Trisodium citrate dihydrate 10 mM; 30C

200 most important genes:

  gene name fitness t score description  
PP_2088 -4.9 -5.9 RNA polymerase sigma factor SigX compare
PP_0293 -4.7 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4058 -4.3 -16.2 1,4-alpha-glucan branching enzyme compare
PP_1988 -3.2 -10.8 3-isopropylmalate dehydrogenase compare
PP_5047 -3.2 -7.8 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4909 -3.2 -9.2 phosphoserine phosphatase compare
PP_1986 -3.1 -5.6 3-isopropylmalate dehydratase small subunit compare
PP_0735 -3.1 -3.1 molybdopterin-synthase adenylyltransferase compare
PP_1995 -3.1 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0083 -3.0 -8.6 tryptophan synthase beta chain compare
PP_5155 -3.0 -5.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0292 -2.9 -3.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0184 -2.8 -8.9 Argininosuccinate lyase compare
PP_2370 -2.8 -5.0 conserved protein of unknown function compare
PP_3511 -2.8 -11.2 Branched-chain-amino-acid aminotransferase compare
PP_5098 -2.8 -8.7 methionine biosynthesis protein MetW compare
PP_4890 -2.8 -9.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_4680 -2.7 -14.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -2.7 -12.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5076 -2.7 -18.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_1985 -2.7 -6.3 3-isopropylmalate dehydratase large subunit compare
PP_5048 -2.7 -5.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0082 -2.7 -6.8 tryptophan synthase alpha chain compare
PP_5289 -2.7 -5.7 Acetylglutamate kinase compare
PP_0289 -2.7 -7.3 Imidazoleglycerol-phosphate dehydratase compare
PP_4696 -2.6 -7.1 Nitrogen regulation protein NR(I) compare
PP_5095 -2.6 -2.5 pyrroline-5-carboxylate reductase compare
PP_4678 -2.5 -13.9 Ketol-acid reductoisomerase compare
PP_0422 -2.5 -5.9 Indole-3-glycerol phosphate synthase compare
PP_0290 -2.5 -7.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4700 -2.5 -4.1 pantothenate synthetase compare
PP_0417 -2.5 -17.3 Anthranilate synthase component 1 compare
PP_2371 -2.5 -8.3 Sulphite reductase hemoprotein, beta subunit compare
PP_1420 -2.5 -12.9 Transcriptional regulatory protein tctD conserved
PP_5075 -2.5 -14.1 glutamate synthase (NADPH) beta subunit compare
PP_1079 -2.4 -6.9 Ornithine carbamoyltransferase compare
PP_0421 -2.4 -8.2 Anthranilate phosphoribosyltransferase compare
PP_2001 -2.4 -11.5 O-succinylhomoserine sulfhydrylase compare
PP_3999 -2.4 -8.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1589 -2.4 -10.8 uridylyltransferase compare
PP_5128 -2.3 -9.5 Dihydroxy-acid dehydratase compare
PP_0965 -2.3 -10.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1088 -2.3 -12.2 Argininosuccinate synthase compare
PP_5097 -2.3 -14.4 homoserine O-acetyltransferase compare
PP_0966 -2.3 -13.0 Histidinol dehydrogenase compare
PP_0420 -2.3 -10.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5185 -2.3 -7.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5014 -2.3 -4.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_4008 -2.2 -8.5 ATP-dependent serine protease compare
PP_4902 -2.2 -4.2 Oligoribonuclease compare
PP_5015 -2.2 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1421 -2.2 -10.9 putative Sensor histidine kinase TctE conserved
PP_4695 -2.1 -12.1 Sensory box histidine kinase compare
PP_4895 -2.0 -3.8 tRNA dimethylallyltransferase compare
PP_4679 -2.0 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1224 -2.0 -6.2 periplasmic subunit of the TolQRA transport system compare
PP_1779 -2.0 -9.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_2092 -2.0 -10.6 Nitrate transporter compare
PP_0691 -2.0 -1.3 Glutamate 5-kinase compare
PP_1703 -2.0 -14.4 assimilatory nitrate reductase/sulfite reductase compare
PP_2123 -1.9 -10.3 molybdenum::molybdopterin ligase compare
PP_1705 -1.9 -11.4 nitrite reductase [NAD(P)H] large subunit compare
PP_4098 -1.9 -2.4 UvrABC system protein C compare
PP_1215 -1.9 -2.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1025 -1.9 -11.8 2-isopropylmalate synthase compare
PP_1294 -1.9 -5.5 molybdopterin synthase large subunit compare
PP_1293 -1.9 -3.1 molybdopterin synthase small subunit compare
PP_0339 -1.8 -2.7 Pyruvate dehydrogenase E1 component compare
PP_1233 -1.8 -4.2 sulfurtransferase compare
PP_1292 -1.8 -9.3 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_1778 -1.8 -8.5 Lipopolysaccharide ABC export system, permease protein compare
PP_1418 -1.7 -9.4 putative Tricarboxylate transport protein TctC conserved
PP_3828 -1.7 -8.8 Molybdate-binding periplasmic protein compare
PP_4724 -1.7 -1.6 Carbamoyl-phosphate synthase small chain compare
PP_4804 -1.7 -2.9 RlpA-like lipoprotein compare
PP_2093 -1.6 -9.8 NasT compare
PP_4723 -1.6 -1.1 Carbamoyl-phosphate synthase large chain compare
PP_0164 -1.5 -8.1 conserved protein of unknown function compare
PP_1216 -1.5 -4.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1706 -1.4 -6.0 Nitrite reductase compare
PP_3829 -1.4 -6.4 Molybdenum transport system permease protein ModB compare
PP_4693 -1.4 -3.9 RNA polymerase-binding transcription factor DksA compare
PP_2302 -1.3 -5.6 DNA-binding, ATP-dependent protease compare
PP_2402 -1.3 -2.6 putative Sensor histidine kinase compare
PP_2328 -1.3 -5.0 Phosphoadenosine phosphosulfate reductase compare
PP_0949 -1.3 -6.6 putative ATP-binding protein UPF0042 compare
PP_2145 -1.3 -3.9 beta-N-acetylglucosaminidase compare
PP_1654 -1.3 -2.5 cysteine synthase B compare
PP_4262 -1.2 -2.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2122 -1.2 -4.9 molybdenum cofactor biosynthesis protein B compare
PP_0435 -1.2 -6.4 Peptidase, M23/M37 family compare
PP_4060 -1.2 -9.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4613 -1.2 -8.8 outer membrane ferric citrate porin conserved
PP_2094 -1.2 -4.5 putative Nitrate-binding protein NasS compare
PP_0833 -1.2 -2.0 queuine tRNA-ribosyltransferase compare
PP_2217 -1.1 -2.1 enoyl-CoA hydratase compare
PP_2327 -1.1 -4.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1364 -1.1 -7.7 conserved exported protein of unknown function compare
PP_1428 -1.1 -1.9 Sigma factor AlgU negative regulatory protein compare
PP_0001 -1.1 -1.7 probable chromosome-partitioning protein compare
PP_0291 -1.1 -2.8 conserved protein of unknown function compare
PP_4505 -1.1 -5.8 Sensor histidine kinase compare
PP_0274 -1.1 -2.7 putative transcriptional regulator containing HTH domain compare
PP_1493 -1.1 -4.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4143 -1.0 -4.0 conserved protein of unknown function compare
PP_0787 -1.0 -3.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0396 -1.0 -7.8 conserved protein of unknown function compare
PP_4785 -1.0 -4.1 conserved exported protein of unknown function compare
PP_4342 -1.0 -3.9 flagellar synthesis regulator, putative ATPase compare
PP_3830 -1.0 -6.5 Molybdenum import ATP-binding protein ModC compare
PP_1231 -1.0 -4.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1764 -1.0 -3.2 Phosphoglycolate phosphatase 2 compare
PP_5202 -1.0 -1.8 putative cell division protein compare
PP_1198 -1.0 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1054 -1.0 -2.8 Type II secretion pathway protein XcpZ compare
PP_2322 -1.0 -4.1 Major outer membrane lipoprotein compare
PP_0395 -1.0 -7.9 putative type IV piliation protein compare
PP_4611 -1.0 -6.1 RNA polymerase sigma-70 factor, ECF subfamily conserved
PP_5217 -0.9 -7.7 Polyphosphate kinase compare
PP_1217 -0.9 -3.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0397 -0.9 -7.7 protein kinase compare
PP_0959 -0.9 -2.4 phospholipid ABC transporter compare
PP_4597 -0.9 -3.2 Cyclic pyranopterin monophosphate synthase compare
PP_0393 -0.9 -1.9 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1366 -0.9 -1.9 Transcriptional regulator MvaT, P16 subunit compare
PP_4268 -0.9 -2.1 nucleoid-associated broad specificity regulator compare
PP_4265 -0.9 -1.2 DNA-binding transcriptional dual regulator compare
PP_2433 -0.9 -2.1 conserved protein of unknown function compare
PP_4004 -0.9 -3.5 DNA translocase FtsK compare
PP_1734 -0.9 -3.2 Probable septum site-determining protein MinC compare
PP_1938 -0.8 -2.4 conserved protein of unknown function compare
PP_2324 -0.8 -4.9 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5505 -0.8 -2.0 conserved transmembrane protein of unknown function compare
PP_0147 -0.8 -6.6 Citrate transporter conserved
PP_5610 -0.8 -2.0 protein of unknown function compare
PP_1353 -0.8 -1.9 conserved membrane protein of unknown function compare
PP_0962 -0.8 -1.9 toluene-tolerance protein compare
PP_4261 -0.8 -3.3 cation-transporting P-type ATPase compare
PP_5329 -0.8 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4126 -0.8 -1.5 NADH-quinone oxidoreductase subunit I compare
PP_4952 -0.8 -1.2 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_4364 -0.8 -2.8 putative Anti-sigma F factor antagonist compare
PP_2345 -0.8 -1.6 conserved exported protein of unknown function compare
PP_1780 -0.8 -6.8 putative mannosyltransferase compare
PP_4699 -0.8 -3.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0406 -0.8 -1.7 Nucleotidyltransferase family protein compare
PP_2378 -0.8 -2.0 Fe/S biogenesis protein NfuA compare
PP_4124 -0.7 -2.8 NADH-quinone oxidoreductase subunit G compare
PP_4271 -0.7 -1.3 conserved protein of unknown function compare
PP_t12 -0.7 -1.1 tRNA-Thr compare
PP_2764 -0.7 -2.8 FMN reductase (NADPH) compare
PP_4362 -0.7 -2.2 conserved protein of unknown function compare
PP_1319 -0.7 -3.2 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_2330 -0.7 -3.4 conserved protein of unknown function compare
PP_0914 -0.7 -5.3 GGDEF domain protein compare
PP_1800 -0.7 -5.5 Oxidoreductase Rmd compare
PP_4782 -0.7 -3.3 Phosphomethylpyrimidine kinase compare
PP_4204 -0.7 -2.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1824 -0.7 -1.5 Smr domain protein compare
PP_5303 -0.7 -3.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4798 -0.7 -3.7 putative Membrane-bound lytic murein transglycosylase compare
PP_1269 -0.7 -1.2 Universal stress protein family compare
PP_4130 -0.7 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4009 -0.7 -2.7 ATP-dependent Clp protease adapter protein ClpS compare
PP_3411 -0.7 -1.6 conserved protein of unknown function compare
PP_2118 -0.7 -1.2 conserved protein of unknown function compare
PP_1208 -0.7 -1.7 conserved protein of unknown function, SlyX family compare
PP_3726 -0.7 -1.4 Enoyl-CoA hydratase/isomerase family protein compare
PP_1021 -0.6 -3.9 DNA-binding transcriptional regulator compare
PP_2720 -0.6 -1.4 conserved protein of unknown function compare
PP_2152 -0.6 -2.6 glycerophosphoryl diester phosphodiesterase compare
PP_1802 -0.6 -5.4 glycosyl transferase compare
PP_5233 -0.6 -3.8 ammonium transporter AmtB compare
PP_2320 -0.6 -4.5 conserved exported protein of unknown function compare
PP_3312 -0.6 -1.1 putative Heat shock protein compare
PP_5652 -0.6 -1.2 conserved protein of unknown function, phage origin compare
PP_1801 -0.6 -4.9 Glycosyl transferase WbpY compare
PP_0960 -0.6 -3.2 phospholipid ABC transporter binding protein compare
PP_t29 -0.6 -1.9 tRNA-Ala compare
PP_2087 -0.6 -1.2 CmpX protein compare
PP_0753 -0.6 -3.6 putative Lipoprotein compare
PP_2163 -0.6 -3.8 VacJ lipoprotein compare
PP_1804 -0.6 -3.9 Glycosyl transferase WbpL compare
PP_4943 -0.6 -1.5 putative Glycosyl transferase compare
PP_2414 -0.6 -1.4 conserved exported protein of unknown function compare
PP_1000 -0.6 -2.6 ornithine carbamoyltransferase, catabolic compare
PP_1430 -0.6 -3.6 putative periplasmic serine endoprotease DegP-like compare
PP_4471 -0.6 -2.1 Magnesium transporter compare
PP_5232 -0.6 -1.7 conserved protein of unknown function compare
PP_2307 -0.6 -2.2 conserved protein of unknown function compare
PP_2677 -0.6 -2.3 conserved exported protein of unknown function compare
PP_3590 -0.6 -3.3 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1318 -0.6 -2.7 Cytochrome b compare
PP_2793 -0.6 -1.1 Acyl-CoA dehydrogenase family protein compare
PP_1733 -0.6 -1.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_5035 -0.6 -3.2 Histidine utilization repressor compare
PP_1303 -0.6 -3.5 Sulfate adenylyltransferase subunit 2 compare
PP_t10 -0.6 -1.4 tRNA-Pro compare
PP_5320 -0.5 -3.8 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_0725 -0.5 -2.4 conserved hypothetical TPR repeat protein compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For carbon source Trisodium citrate dihydrate across organisms