Experiment set17IT038 for Pseudomonas putida KT2440

Compare to:

M9 minimal media_noCarbon with Trisodium citrate dihydrate 10 mM; 30C

200 most important genes:

  gene name fitness t score description  
PP_0290 -5.8 -11.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0083 -5.6 -7.7 tryptophan synthase beta chain compare
PP_0082 -5.6 -7.6 tryptophan synthase alpha chain compare
PP_4058 -5.5 -12.8 1,4-alpha-glucan branching enzyme compare
PP_4680 -5.3 -17.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -5.3 -11.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5014 -5.3 -3.6 Phosphoribosyl-AMP cyclohydrolase compare
PP_1988 -5.2 -11.7 3-isopropylmalate dehydrogenase compare
PP_4678 -5.1 -18.5 Ketol-acid reductoisomerase compare
PP_0967 -5.1 -13.3 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0293 -5.1 -4.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -5.1 -10.2 Branched-chain-amino-acid aminotransferase compare
PP_0184 -5.0 -10.7 Argininosuccinate lyase compare
PP_4909 -5.0 -8.4 phosphoserine phosphatase compare
PP_1088 -5.0 -16.6 Argininosuccinate synthase compare
PP_5289 -5.0 -6.6 Acetylglutamate kinase compare
PP_0966 -4.9 -13.6 Histidinol dehydrogenase compare
PP_5185 -4.9 -9.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4679 -4.9 -8.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5155 -4.8 -7.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4696 -4.7 -6.5 Nitrogen regulation protein NR(I) compare
PP_0417 -4.6 -20.4 Anthranilate synthase component 1 compare
PP_4890 -4.3 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_1418 -4.2 -11.5 putative Tricarboxylate transport protein TctC conserved
PP_1985 -4.1 -7.8 3-isopropylmalate dehydratase large subunit compare
PP_1079 -4.1 -7.5 Ornithine carbamoyltransferase compare
PP_0289 -4.0 -8.6 Imidazoleglycerol-phosphate dehydratase compare
PP_0292 -4.0 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1420 -4.0 -11.4 Transcriptional regulatory protein tctD conserved
PP_0965 -3.8 -8.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0422 -3.6 -6.7 Indole-3-glycerol phosphate synthase compare
PP_1421 -3.5 -11.6 putative Sensor histidine kinase TctE conserved
PP_2371 -3.4 -8.4 Sulphite reductase hemoprotein, beta subunit compare
PP_3999 -3.4 -9.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1986 -3.4 -5.1 3-isopropylmalate dehydratase small subunit compare
PP_0421 -3.3 -7.9 Anthranilate phosphoribosyltransferase compare
PP_5097 -3.3 -13.8 homoserine O-acetyltransferase compare
PP_1231 -3.2 -9.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2001 -3.2 -10.0 O-succinylhomoserine sulfhydrylase compare
PP_5128 -3.2 -8.5 Dihydroxy-acid dehydratase compare
PP_0787 -3.2 -4.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2370 -3.1 -5.3 conserved protein of unknown function compare
PP_0420 -2.9 -10.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5098 -2.8 -6.9 methionine biosynthesis protein MetW compare
PP_2327 -2.7 -7.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5015 -2.7 -4.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1025 -2.7 -9.6 2-isopropylmalate synthase compare
PP_4695 -2.6 -11.0 Sensory box histidine kinase compare
PP_0393 -2.4 -3.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5095 -2.3 -2.2 pyrroline-5-carboxylate reductase compare
PP_2433 -2.0 -4.9 conserved protein of unknown function compare
PP_0291 -2.0 -1.9 conserved protein of unknown function compare
PP_1778 -2.0 -7.8 Lipopolysaccharide ABC export system, permease protein compare
PP_4902 -1.9 -3.3 Oligoribonuclease compare
PP_0339 -1.7 -1.7 Pyruvate dehydrogenase E1 component compare
PP_4213 -1.7 -4.5 putative dipeptidase compare
PP_4724 -1.7 -1.1 Carbamoyl-phosphate synthase small chain compare
PP_0691 -1.6 -1.1 Glutamate 5-kinase compare
PP_0001 -1.6 -2.5 probable chromosome-partitioning protein compare
PP_1664 -1.6 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_0261 -1.5 -6.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0913 -1.5 -7.2 conserved exported protein of unknown function compare
PP_4060 -1.5 -10.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_2328 -1.4 -5.6 Phosphoadenosine phosphosulfate reductase compare
PP_4008 -1.4 -6.4 ATP-dependent serine protease compare
PP_4126 -1.4 -2.1 NADH-quinone oxidoreductase subunit I compare
PP_5303 -1.4 -4.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1779 -1.3 -6.3 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1034 -1.3 -9.6 multicopper oxidase conserved
PP_4265 -1.3 -0.9 DNA-binding transcriptional dual regulator compare
PP_2088 -1.3 -3.6 RNA polymerase sigma factor SigX compare
PP_1734 -1.3 -4.5 Probable septum site-determining protein MinC compare
PP_4700 -1.3 -2.8 pantothenate synthetase compare
PP_0910 -1.2 -5.8 conserved exported protein of unknown function compare
PP_t10 -1.2 -2.8 tRNA-Pro compare
PP_4723 -1.2 -0.8 Carbamoyl-phosphate synthase large chain compare
PP_2217 -1.2 -3.1 enoyl-CoA hydratase compare
PP_5104 -1.2 -7.5 thiazole synthase compare
PP_0833 -1.2 -1.9 queuine tRNA-ribosyltransferase compare
PP_4122 -1.1 -2.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1233 -1.1 -3.9 sulfurtransferase compare
PP_4214 -1.1 -2.4 pyoverdine biosynthesis related protein compare
PP_0164 -1.1 -6.1 conserved protein of unknown function compare
PP_4121 -1.1 -4.3 NADH-quinone oxidoreductase subunit C/D compare
PP_0949 -1.1 -4.7 putative ATP-binding protein UPF0042 compare
PP_4613 -1.1 -8.1 outer membrane ferric citrate porin conserved
PP_4782 -1.1 -5.0 Phosphomethylpyrimidine kinase compare
PP_4253 -1.1 -3.0 cytochrome c oxidase subunit, cbb3-type compare
PP_2302 -1.1 -5.2 DNA-binding, ATP-dependent protease compare
PP_5216 -1.0 -2.2 exopolyphosphatase compare
PP_0908 -1.0 -6.3 conserved exported protein of unknown function conserved
PP_1416 -1.0 -5.7 putative Tricarboxylate transport protein TctA conserved
PP_4611 -1.0 -6.0 RNA polymerase sigma-70 factor, ECF subfamily conserved
PP_1598 -1.0 -3.8 regulatory intramembrane protein RIP zinc protease compare
PP_1237 -0.9 -1.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1733 -0.9 -2.9 membrane ATPase of the MinC-MinD-MinE system compare
PP_0065 -0.9 -3.4 NAD-binding component of TrK potassium transporter compare
PP_0063 -0.9 -4.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_4917 -0.9 -3.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2152 -0.9 -2.4 glycerophosphoryl diester phosphodiesterase compare
PP_3790 -0.8 -5.7 diaminopimelate epimerase compare
PP_0909 -0.8 -5.7 conserved exported protein of unknown function compare
PP_4874 -0.8 -1.5 50S ribosomal protein L9 compare
PP_2899 -0.8 -2.0 conserved exported protein of unknown function compare
PP_5329 -0.8 -2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1417 -0.8 -3.8 putative Tricarboxylate transport protein TctB conserved
PP_1303 -0.8 -5.0 Sulfate adenylyltransferase subunit 2 compare
PP_0119 -0.8 -3.4 putative zinc uptake regulation protein ZUR compare
PP_1110 -0.8 -2.9 serine acetyltransferase compare
PP_0653 -0.8 -1.6 conserved protein of unknown function compare
PP_1176 -0.8 -1.2 conserved protein of unknown function compare
PP_0022 -0.8 -1.2 hypothetical protein compare
PP_1353 -0.8 -1.8 conserved membrane protein of unknown function compare
PP_1304 -0.8 -5.3 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2345 -0.8 -1.5 conserved exported protein of unknown function compare
PP_4828 -0.8 -1.2 Precorrin-8X methylmutase compare
PP_4387 -0.8 -2.0 conserved exported protein of unknown function compare
PP_4271 -0.7 -1.3 conserved protein of unknown function compare
PP_5217 -0.7 -6.0 Polyphosphate kinase compare
PP_1729 -0.7 -2.1 conserved protein of unknown function compare
PP_5328 -0.7 -1.8 putative phosphate transport system permease protein compare
PP_3505 -0.7 -1.5 conserved protein of unknown function compare
PP_4964 -0.7 -2.0 D-erythrose 4-phosphate dehydrogenase compare
PP_1021 -0.7 -3.9 DNA-binding transcriptional regulator compare
PP_0502 -0.7 -3.2 conserved protein of unknown function compare
PP_5035 -0.7 -4.3 Histidine utilization repressor compare
PP_4891 -0.7 -2.4 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4362 -0.7 -3.0 conserved protein of unknown function compare
PP_4532 -0.7 -1.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5610 -0.7 -1.3 protein of unknown function compare
PP_0147 -0.7 -5.8 Citrate transporter conserved
PP_3590 -0.7 -4.0 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0627 -0.7 -2.0 conserved protein of unknown function compare
PP_4804 -0.7 -1.5 RlpA-like lipoprotein compare
PP_5090 -0.7 -2.3 putative cell division protein compare
PP_5114 -0.7 -1.6 putative adenine methyltransferase compare
PP_1419 -0.7 -2.3 tricarboxylate-specific outer membrane porin conserved
PP_4342 -0.6 -2.4 flagellar synthesis regulator, putative ATPase compare
PP_3508 -0.6 -2.5 Protein CobW compare
PP_0362 -0.6 -5.0 Biotin synthase compare
PP_4895 -0.6 -1.6 tRNA dimethylallyltransferase compare
PP_4922 -0.6 -4.7 Phosphomethylpyrimidine synthase compare
PP_0232 -0.6 -1.3 ATP-binding taurine transporter subunit compare
PP_4130 -0.6 -2.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2196 -0.6 -2.1 agmatinase compare
PP_4143 -0.6 -2.5 conserved protein of unknown function compare
PP_4098 -0.6 -1.9 UvrABC system protein C compare
PP_2348 -0.6 -3.5 Sensor histidine kinase compare
PP_4642 -0.6 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_2153 -0.6 -2.2 conserved protein of unknown function compare
PP_4247 -0.6 -1.5 Exonuclease compare
PP_4471 -0.6 -2.6 Magnesium transporter compare
PP_0117 -0.6 -3.3 Zn(2+) ABC transporter - permease subunit compare
PP_5483 -0.6 -1.7 conserved protein of unknown function compare
PP_5508 -0.6 -1.1 conserved protein of unknown function compare
PP_4892 -0.6 -2.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5198 -0.6 -1.9 conserved protein of unknown function compare
PP_4124 -0.6 -2.0 NADH-quinone oxidoreductase subunit G compare
PP_0834 -0.6 -1.9 Sec translocation complex subunit YajC compare
PP_3789 -0.6 -3.8 putative Efflux transporter compare
PP_1364 -0.6 -4.5 conserved exported protein of unknown function compare
PP_2253 -0.6 -1.9 Transcriptional regulator, GntR family compare
PP_4693 -0.6 -1.9 RNA polymerase-binding transcription factor DksA compare
PP_2497 -0.6 -1.6 conserved protein of unknown function compare
PP_4129 -0.6 -1.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0395 -0.6 -4.6 putative type IV piliation protein compare
PP_1826 -0.6 -1.8 Hydrolase, isochorismatase family compare
PP_1078 -0.6 -3.9 putative ABC transporter, ATP-binding protein compare
PP_1216 -0.6 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3480 -0.5 -2.2 conserved protein of unknown function compare
PP_0397 -0.5 -4.6 protein kinase compare
PP_5027 -0.5 -1.8 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_0841 -0.5 -1.5 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_1493 -0.5 -1.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4792 -0.5 -1.4 conserved exported protein of unknown function compare
PP_4860 -0.5 -4.3 putative Mannose-6-phosphate isomerase compare
PP_3314 -0.5 -2.3 Heat shock protein, HSP20 family compare
PP_2929 -0.5 -3.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5227 -0.5 -2.6 diaminopimelate decarboxylase compare
PP_0703 -0.5 -1.4 putative Transmembrane sensor compare
PP_5571 -0.5 -1.3 conserved protein of unknown function compare
PP_1860 -0.5 -2.8 Organic hydroperoxide resistance transcriptional regulator compare
PP_2768 -0.5 -2.3 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3649 -0.5 -2.5 Transcriptional regulator, GntR family compare
PP_4480 -0.5 -3.2 arginine N-succinyltransferase, subunit alpha compare
PP_5139 -0.5 -2.3 cadmium translocating P-type ATPase compare
PP_0640 -0.5 -2.0 conserved protein of unknown function compare
PP_1317 -0.5 -2.1 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1319 -0.5 -2.4 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1987 -0.5 -1.5 Methlytransferase, UbiE/COQ5 family compare
PP_4879 -0.5 -2.4 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_0881 -0.5 -2.4 dipeptide ABC transporter - putative membrane subunit compare
PP_4942 -0.5 -1.6 conserved protein of unknown function compare
PP_0972 -0.5 -1.9 UPF0213 protein PP_0972 compare
PP_4482 -0.5 -1.7 Transcriptional regulator, AraC family compare
PP_2077 -0.5 -3.2 diaminopimelate decarboxylase compare
PP_4261 -0.5 -2.3 cation-transporting P-type ATPase compare
PP_2326 -0.5 -2.8 Universal stress protein compare
PP_1198 -0.5 -2.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1000 -0.5 -1.8 ornithine carbamoyltransferase, catabolic compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Trisodium citrate dihydrate in Pseudomonas putida KT2440

For carbon source Trisodium citrate dihydrate across organisms