Experiment set17IT036 for Pseudomonas putida KT2440

Compare to:

Soil Extract with D-Glucose 10 mM; 15C

200 most detrimental genes:

  gene name fitness t score description  
PP_1650 +1.6 14.8 Sensor protein GacS compare
PP_4099 +1.4 10.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4373 +1.2 10.6 Transcriptional regulator FleQ compare
PP_3926 +1.1 2.5 short-chain dehydrogenase compare
PP_0846 +1.0 1.4 DnaK-like molecular chaperone specific for IscU compare
PP_1055 +0.9 3.2 Type II secretion pathway protein GspN compare
PP_4171 +0.9 8.0 conserved exported protein of unknown function compare
PP_1008 +0.8 3.4 RNA polymerase subunit sigma-24 compare
PP_0166 +0.8 7.2 HlyD family secretion protein compare
PP_0168 +0.7 7.2 putative surface adhesion protein compare
PP_5393 +0.7 1.2 putative metal-binding chaperone compare
PP_4519 +0.7 6.4 Agglutination protein compare
PP_4390 +0.7 5.1 flagellar basal-body rod protein FlgC compare
PP_5295 +0.7 2.9 conserved protein of unknown function compare
PP_3239 +0.7 2.2 putative cointegrate resolution protein T Tn4652 compare
PP_0167 +0.7 6.0 Toxin secretion ATP-binding protein compare
PP_0185 +0.6 5.1 Positive alginate biosynthesis regulatory protein compare
PP_1935 +0.6 2.9 Transcriptional regulator, Cro/CI family compare
PP_4173 +0.6 5.5 Sensor histidine kinase/response regulator compare
PP_3110 +0.6 2.2 protein of unknown function compare
PP_0165 +0.6 5.3 GGDEF domain protein compare
PP_4342 +0.6 3.3 flagellar synthesis regulator, putative ATPase compare
PP_4406 +0.6 2.2 conserved protein of unknown function compare
PP_1097 +0.6 1.0 Methionine--tRNA ligase compare
PP_2387 +0.6 2.4 conserved protein of unknown function compare
PP_1404 +0.6 2.7 conserved protein of unknown function compare
PP_4172 +0.6 4.6 conserved exported protein of unknown function compare
PP_1609 +0.6 1.3 conserved protein of unknown function compare
PP_3037 +0.6 2.8 C4-type zinc finger protein, DksA/TraR family compare
PP_4424 +0.6 1.3 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_1742 +0.6 1.6 conserved inner membrane protein of unknown function compare
PP_5045 +0.5 2.5 tRNA sulfurtransferase compare
PP_1727 +0.5 3.6 Transcriptional regulator, GntR family compare
PP_2306 +0.5 2.2 conserved exported protein of unknown function compare
PP_3434 +0.5 2.0 conserved protein of unknown function compare
PP_2429 +0.5 1.6 putative Membrane protein compare
PP_0566 +0.5 1.1 translation-related factor compare
PP_4329 +0.5 2.1 FlhB domain protein compare
PP_4162 +0.5 1.8 conserved membrane protein of unknown function compare
PP_5221 +0.5 1.2 conserved protein of unknown function, UPF0178 family compare
PP_0627 +0.5 1.7 conserved protein of unknown function compare
PP_4120 +0.5 2.1 NADH-quinone oxidoreductase subunit B compare
PP_0007 +0.5 1.6 conserved hypothetical protein compare
PP_3415 +0.5 2.9 Transcriptional regulator, LacI family compare
PP_0919 +0.5 2.5 conserved protein of unknown function compare
PP_0610 +0.5 1.6 conserved exported protein of unknown function compare
PP_2403 +0.5 1.6 Chemotaxis protein CheY compare
PP_4094 +0.5 2.1 conserved protein of unknown function compare
PP_5505 +0.5 1.8 conserved transmembrane protein of unknown function compare
PP_0022 +0.5 1.1 hypothetical protein compare
PP_1096 +0.5 1.2 putative electron transport complex protein compare
PP_2581 +0.5 1.7 conserved protein of unknown function compare
PP_0482 +0.5 3.6 bacterioferritin compare
PP_5546 +0.5 0.9 conserved protein of unknown function compare
PP_4710 +0.5 3.6 tRNA pseudouridine 55 synthase compare
PP_t13 +0.5 1.8 tRNA-Lys compare
PP_4386 +0.5 3.3 flagellar basal-body rod protein FlgF compare
PP_2060 +0.5 1.2 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0794 +0.5 1.6 1-phosphofructokinase monomer compare
PP_2927 +0.5 2.4 conserved protein of unknown function compare
PP_5000 +0.5 1.7 peptidase component of the ATP-dependent HslVU protease compare
PP_4828 +0.5 1.3 Precorrin-8X methylmutase compare
PP_5381 +0.4 2.4 hypothetical protein compare
PP_3318 +0.4 1.9 conserved protein of unknown function compare
PP_3519 +0.4 1.0 putative Lipoprotein compare
PP_2274 +0.4 2.4 conserved protein of unknown function compare
PP_2747 +0.4 1.6 conserved protein of unknown function compare
PP_3947 +0.4 2.6 nicotinate dehydrogenase subunit A compare
PP_1544 +0.4 2.2 conserved protein of unknown function compare
PP_3821 +0.4 3.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3312 +0.4 1.2 putative Heat shock protein compare
PP_3199 +0.4 2.5 putative Monooxygenase compare
PP_4930 +0.4 1.6 putative small multidrug resistance protein compare
PP_2681 +0.4 1.1 coenzyme PQQ synthesis protein D compare
PP_2847 +0.4 1.4 Urease accessory protein UreJ compare
PP_4367 +0.4 1.8 Flagellar assembly protein FliH compare
PP_3761 +0.4 3.5 Sensor histidine kinase/response regulator compare
PP_0672 +0.4 3.5 Sensory box protein compare
PP_2526 +0.4 1.5 conserved membrane protein of unknown function compare
PP_1554 +0.4 1.7 conserved protein of unknown function compare
PP_5640 +0.4 2.0 conserved protein of unknown function compare
PP_5311 +0.4 2.9 putative signal transduction protein compare
PP_3048 +0.4 1.1 conserved protein of unknown function compare
PP_4159 +0.4 1.8 Potassium-transporting ATPase C chain compare
PP_2365 +0.4 2.5 Transcriptional regulator, AraC family compare
PP_0916 +0.4 1.2 Amino acid transporter LysE compare
PP_4997 +0.4 0.9 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_3407 +0.4 2.0 conserved protein of unknown function compare
PP_5324 +0.4 1.0 Response regulator compare
PP_4394 +0.4 2.6 flagella basal body P-ring formation protein compare
PP_5053 +0.4 2.5 Protein-export protein SecB compare
PP_4561 +0.4 0.7 stress response protein compare
PP_4835 +0.4 1.6 conserved exported protein of unknown function compare
PP_4769 +0.4 1.7 conserved protein of unknown function compare
PP_4385 +0.4 2.3 flagellar basal-body rod protein FlgG compare
PP_5157 +0.4 2.1 conserved exported protein of unknown function compare
PP_0235 +0.4 1.6 Peroxidase compare
PP_0105 +0.4 2.1 Cytochrome C oxidase assembly protein compare
PP_3064 +0.4 1.6 Phage tail protein compare
PP_2615 +0.4 1.7 hemolysin-coregulated protein compare
PP_4905 +0.4 2.0 Flagellar motor rotation protein compare
PP_1255 +0.4 2.0 putative cis-4-hydroxy-D-proline oxidase compare
PP_2070 +0.4 1.4 Transcriptional regulator, AraC family compare
PP_2547 +0.4 1.7 Transcriptional regulator, LysR family compare
PP_4391 +0.4 2.3 flagellar basal-body rod protein FlgB compare
PP_5429 +0.4 2.4 protein of unknown function compare
PP_3715 +0.3 1.5 Muconate cycloisomerase 1 compare
PP_2668 +0.3 1.1 ABC efflux transporter, ATP-binding protein compare
PP_4126 +0.3 0.8 NADH-quinone oxidoreductase subunit I compare
PP_3000 +0.3 2.0 MaoC domain protein compare
PP_3247 +0.3 2.0 Transporter, bile acid/Na+ symporter family compare
PP_2611 +0.3 1.9 membrane protein of unknown function compare
PP_2458 +0.3 2.5 ribokinase compare
PP_5274 +0.3 1.4 conserved protein of unknown function compare
PP_4904 +0.3 2.5 Flagellar motor rotation protein compare
PP_1049 +0.3 2.4 putative protein secretion protein for export compare
PP_4569 +0.3 1.6 conserved protein of unknown function compare
PP_4131 +0.3 1.8 NADH-quinone oxidoreductase subunit N compare
PP_1876 +0.3 1.5 putative ATP/GTP-binding protein of the AAA+ family compare
PP_4833 +0.3 1.5 SURF1 domain protein compare
PP_1066 +0.3 1.3 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_0153 +0.3 1.3 hypothetical protein compare
PP_4251 +0.3 1.6 cytochrome c oxidase subunit, cbb3-type compare
PP_3884 +0.3 1.7 Phage holin, lambda family compare
PP_4361 +0.3 2.5 Flagellar hook-length control protein FliK compare
PP_4914 +0.3 1.3 putative phytase-like protein compare
PP_1439 +0.3 0.9 conserved exported protein of unknown function compare
PP_1578 +0.3 2.0 conserved protein of unknown function compare
PP_4388 +0.3 2.8 Flagellar hook protein FlgE compare
PP_0258 +0.3 1.7 regulator of murein cross-linking compare
PP_5558 +0.3 1.9 putative transcriptional xre family of phage origin compare
PP_5475 +0.3 0.8 conserved protein of unknown function compare
PP_0355 +0.3 1.6 Response regulator compare
PP_2255 +0.3 2.1 C4-dicarboxylate transport protein compare
PP_3578 +0.3 2.4 phosphoglucomutase compare
PP_3232 +0.3 2.0 Acetyltransferase, GNAT family compare
PP_1702 +0.3 1.7 Recombination-associated protein RdgC compare
PP_3183 +0.3 2.4 SCO1/SenC family protein/cytochrome c compare
PP_0583 +0.3 2.2 Transcriptional regulator, AraC family compare
PP_4227 +0.3 1.1 conserved protein of unknown function compare
PP_1812 +0.3 1.3 conserved protein of unknown function compare
PP_1186 +0.3 0.6 two component system DNA-binding transcriptional dual regulator compare
PP_1744 +0.3 1.3 conserved exported protein of unknown function compare
PP_4288 +0.3 1.9 ureidoglycolate lyase compare
PP_2814 +0.3 1.7 conserved protein of unknown function compare
PP_0585 +0.3 1.5 putative metal-sensitive transcriptional regulator, MerR family compare
PP_3908 +0.3 1.1 conserved protein of unknown function compare
PP_2254 +0.3 1.7 Transcriptional regulator, GntR family compare
PP_1113 +0.3 2.3 Pyridoxal-phosphate dependent enzyme family protein compare
PP_5617 +0.3 1.7 conserved protein of unknown function compare
PP_2994 +0.3 1.9 Oxidoreductase, FMN-binding compare
PP_5487 +0.3 1.2 conserved protein of unknown function compare
PP_5480 +0.3 1.9 conserved exported protein of unknown function compare
PP_5183 +0.3 1.7 glutamylpolyamine synthetase compare
PP_4198 +0.3 1.8 OmpA family protein compare
PP_3758 +0.3 1.8 Response regulator/sensor histidine kinase compare
PP_1836 +0.3 1.5 putative metal transporter, ZIP family compare
PP_2349 +0.3 1.5 nitrite transporter, HPP family (from data) compare
PP_5708 +0.3 2.0 protein of unknown function compare
PP_2740 +0.3 1.0 Transcriptional regulator, MerR family compare
PP_0959 +0.3 0.7 phospholipid ABC transporter compare
PP_5495 +0.3 0.9 protein of unknown function compare
PP_0674 +0.3 2.4 ADP/ATP ratio sensor and inhibitor of translation compare
PP_4050 +0.3 2.6 glycogen synthase compare
PP_t49 +0.3 1.6 tRNA-Met compare
PP_2800 +0.3 1.5 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_2682 +0.3 1.9 Fe-containing alcohol dehydrogenase compare
PP_3444 +0.3 2.0 Glyoxalase family protein compare
PP_1021 +0.3 2.0 DNA-binding transcriptional regulator compare
PP_4384 +0.3 2.2 Flagellar L-ring protein compare
PP_4100 +0.3 1.9 Transcriptional regulator, Cro/CI family compare
PP_0819 +0.3 1.7 conserved ferredoxin-like protein of unknown function compare
PP_3888 +0.3 1.4 conserved protein of unknown function compare
PP_3201 +0.3 1.7 BNR domain protein compare
PP_1325 +0.3 1.8 putative lipoprotein compare
PP_2023 +0.3 1.2 Glutathione S-transferase family protein compare
PP_1490 +0.3 2.1 Probable biofilm formation methyltransferase WspC compare
PP_5535 +0.3 1.7 conserved membrane protein of unknown function compare
PP_0989 +0.3 1.3 glycine cleavage system H protein 1 compare
PP_4139 +0.3 1.8 conserved protein of unknown function compare
PP_2225 +0.3 1.5 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_4555 +0.3 1.1 conserved protein of unknown function compare
PP_0738 +0.3 0.9 conserved protein of unknown function compare
PP_5277 +0.3 1.9 Major facilitator family transporter compare
PP_3855 +0.3 1.8 conserved protein of unknown function compare
PP_5359 +0.3 1.1 CobW/P47K family protein compare
PP_2049 +0.3 1.8 Alcohol dehydrogenase, iron-containing compare
PP_1412 +0.3 1.7 3-hydroxyisobutyryl-CoA hydrolase compare
PP_4593 +0.3 0.5 conserved protein of unknown function compare
PP_5628 +0.3 1.3 conserved protein of unknown function compare
PP_1473 +0.3 1.2 conserved protein of unknown function compare
PP_3164 +0.3 1.4 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_1451 +0.3 1.1 conserved exported protein of unknown function compare
PP_0276 +0.3 0.6 Transcriptional regulator, Cro/CI family compare
PP_t11 +0.3 0.8 tRNA-Lys compare
PP_0666 +0.3 1.4 conserved protein of unknown function compare
PP_1930 +0.3 1.7 arsenic resistance transcriptional regulator compare
PP_5121 +0.3 1.1 conserved exported protein of unknown function compare
PP_3798 +0.3 1.6 conserved protein of unknown function compare
PP_2003 +0.3 1.2 conserved protein of unknown function compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms