Experiment set17IT035 for Pseudomonas putida KT2440

Compare to:

Soil Extract with D-Glucose 10 mM; 15C

200 most important genes:

  gene name fitness t score description  
PP_0082 -4.1 -9.0 tryptophan synthase alpha chain compare
PP_5095 -4.0 -2.8 pyrroline-5-carboxylate reductase compare
PP_4058 -4.0 -15.9 1,4-alpha-glucan branching enzyme compare
PP_1986 -3.6 -4.1 3-isopropylmalate dehydratase small subunit compare
PP_0293 -3.6 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4696 -3.6 -8.3 Nitrogen regulation protein NR(I) compare
PP_0083 -3.4 -8.4 tryptophan synthase beta chain compare
PP_2168 -3.4 -11.2 Transaldolase compare
PP_1778 -3.3 -10.5 Lipopolysaccharide ABC export system, permease protein compare
PP_5015 -3.2 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5014 -3.1 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_4909 -3.0 -9.2 phosphoserine phosphatase compare
PP_0184 -2.9 -8.9 Argininosuccinate lyase compare
PP_0289 -2.9 -8.4 Imidazoleglycerol-phosphate dehydratase compare
PP_5128 -2.9 -7.4 Dihydroxy-acid dehydratase compare
PP_1988 -2.8 -8.0 3-isopropylmalate dehydrogenase compare
PP_3999 -2.8 -10.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0290 -2.8 -11.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5048 -2.8 -7.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1198 -2.7 -4.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4679 -2.7 -7.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -2.7 -16.1 Ketol-acid reductoisomerase compare
PP_5075 -2.7 -14.2 glutamate synthase (NADPH) beta subunit compare
PP_0292 -2.7 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0967 -2.7 -11.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4890 -2.7 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_5076 -2.6 -18.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_5097 -2.6 -14.0 homoserine O-acetyltransferase compare
PP_0420 -2.6 -11.7 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0417 -2.6 -16.2 Anthranilate synthase component 1 compare
PP_0422 -2.5 -7.0 Indole-3-glycerol phosphate synthase compare
PP_1995 -2.5 -8.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1985 -2.5 -7.6 3-isopropylmalate dehydratase large subunit compare
PP_3511 -2.5 -7.9 Branched-chain-amino-acid aminotransferase compare
PP_5047 -2.5 -8.8 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0421 -2.4 -7.8 Anthranilate phosphoribosyltransferase compare
PP_2001 -2.4 -11.1 O-succinylhomoserine sulfhydrylase compare
PP_4680 -2.4 -12.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1589 -2.4 -10.0 uridylyltransferase compare
PP_5098 -2.4 -9.0 methionine biosynthesis protein MetW compare
PP_1705 -2.4 -10.5 nitrite reductase [NAD(P)H] large subunit compare
PP_5289 -2.4 -5.4 Acetylglutamate kinase compare
PP_2093 -2.4 -8.3 NasT compare
PP_1088 -2.3 -11.8 Argininosuccinate synthase compare
PP_0966 -2.2 -9.5 Histidinol dehydrogenase compare
PP_4724 -2.1 -1.5 Carbamoyl-phosphate synthase small chain compare
PP_2370 -2.1 -2.3 conserved protein of unknown function compare
PP_1293 -2.1 -3.9 molybdopterin synthase small subunit compare
PP_4700 -2.1 -3.7 pantothenate synthetase compare
PP_0965 -2.0 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5185 -2.0 -6.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1079 -2.0 -6.0 Ornithine carbamoyltransferase compare
PP_1779 -2.0 -7.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1012 -2.0 -6.5 DNA-binding response regulator compare
PP_4642 -2.0 -2.6 Cyclic diguanosine monophosphate-binding protein compare
PP_0339 -2.0 -2.7 Pyruvate dehydrogenase E1 component compare
PP_2328 -2.0 -6.4 Phosphoadenosine phosphosulfate reductase compare
PP_0719 -2.0 -2.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1706 -2.0 -7.1 Nitrite reductase compare
PP_2371 -2.0 -6.2 Sulphite reductase hemoprotein, beta subunit compare
PP_2092 -2.0 -9.8 Nitrate transporter compare
PP_4902 -1.9 -2.9 Oligoribonuclease compare
PP_5216 -1.9 -3.3 exopolyphosphatase compare
PP_4785 -1.8 -5.3 conserved exported protein of unknown function compare
PP_0691 -1.8 -1.7 Glutamate 5-kinase compare
PP_1018 -1.8 -9.3 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_0164 -1.8 -8.5 conserved protein of unknown function compare
PP_1022 -1.7 -6.9 glucose 6-phosphate-1-dehydrogenase compare
PP_1017 -1.7 -6.8 mannose/glucose ABC transporter, permease protein conserved
PP_1015 -1.7 -8.8 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_0395 -1.7 -12.4 putative type IV piliation protein compare
PP_5347 -1.7 -8.9 pyruvate carboxylase subunit A compare
PP_4695 -1.7 -10.2 Sensory box histidine kinase compare
PP_4723 -1.7 -1.6 Carbamoyl-phosphate synthase large chain compare
PP_4008 -1.7 -6.7 ATP-dependent serine protease compare
PP_0396 -1.6 -11.5 conserved protein of unknown function compare
PP_2433 -1.6 -2.5 conserved protein of unknown function compare
PP_0397 -1.6 -12.3 protein kinase compare
PP_0291 -1.6 -2.3 conserved protein of unknown function compare
PP_5348 -1.6 -9.3 Transcriptional regulator, LysR family compare
PP_0274 -1.6 -3.0 putative transcriptional regulator containing HTH domain compare
PP_4265 -1.6 -1.5 DNA-binding transcriptional dual regulator compare
PP_2122 -1.5 -2.9 molybdenum cofactor biosynthesis protein B compare
PP_5155 -1.5 -3.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_t29 -1.5 -3.5 tRNA-Ala compare
PP_1016 -1.5 -8.7 mannose/glucose ABC transporter, permease protein conserved
PP_1013 -1.5 -6.4 Sensor histidine kinase compare
PP_4098 -1.5 -2.3 UvrABC system protein C compare
PP_4009 -1.5 -5.7 ATP-dependent Clp protease adapter protein ClpS compare
PP_5346 -1.4 -6.7 pyruvate carboxylase subunit B compare
PP_1623 -1.4 -10.3 RNA polymerase, sigma S (sigma 38) factor compare
PP_4804 -1.4 -2.7 RlpA-like lipoprotein compare
PP_1215 -1.4 -3.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_0630 -1.4 -1.9 DNA gyrase inhibitor YacG compare
PP_0949 -1.4 -5.7 putative ATP-binding protein UPF0042 compare
PP_1011 -1.4 -9.1 glucokinase compare
PP_1703 -1.4 -11.0 assimilatory nitrate reductase/sulfite reductase compare
PP_1025 -1.4 -5.9 2-isopropylmalate synthase compare
PP_2123 -1.3 -8.8 molybdenum::molybdopterin ligase compare
PP_1224 -1.3 -6.7 periplasmic subunit of the TolQRA transport system compare
PP_1294 -1.3 -5.4 molybdopterin synthase large subunit compare
PP_0937 -1.3 -5.2 endoribonuclease G (RNAse G) compare
PP_5217 -1.3 -10.3 Polyphosphate kinase compare
PP_2378 -1.3 -3.4 Fe/S biogenesis protein NfuA compare
PP_2302 -1.3 -6.2 DNA-binding, ATP-dependent protease compare
PP_1292 -1.3 -5.1 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_1654 -1.3 -2.5 cysteine synthase B compare
PP_1664 -1.2 -3.2 phosphoribosylglycinamide formyltransferase 1 compare
PP_3649 -1.2 -5.4 Transcriptional regulator, GntR family compare
PP_2094 -1.2 -5.2 putative Nitrate-binding protein NasS compare
PP_4143 -1.2 -4.4 conserved protein of unknown function compare
PP_4060 -1.2 -9.1 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1216 -1.1 -3.5 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1493 -1.1 -2.9 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1233 -1.1 -3.9 sulfurtransferase compare
PP_4126 -1.0 -1.8 NADH-quinone oxidoreductase subunit I compare
PP_1217 -1.0 -3.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1898 -1.0 -2.4 MotA/TolQ/ExbB proton channel family protein compare
PP_4943 -1.0 -1.6 putative Glycosyl transferase compare
PP_5313 -1.0 -2.1 DNA-binding protein HU-alpha compare
PP_3376 -1.0 -5.0 putative phosphonate dehydrogenase compare
PP_4693 -1.0 -3.3 RNA polymerase-binding transcription factor DksA compare
PP_0948 -1.0 -2.0 Phosphocarrier protein HPr compare
PP_5055 -1.0 -3.3 Sulfurtransferase compare
PP_5507 -0.9 -1.9 protein of unknown function compare
PP_3603 -0.9 -4.8 Transcriptional regulator, GntR family compare
PP_4942 -0.9 -2.6 conserved protein of unknown function compare
PP_4726 -0.9 -2.2 Chaperone protein DnaJ compare
PP_3098 -0.9 -1.6 conserved protein of unknown function compare
PP_4895 -0.9 -2.2 tRNA dimethylallyltransferase compare
PP_2000 -0.9 -1.2 amidophosphoribosyl transferase compare
PP_0202 -0.9 -4.6 CBS domain-containing protein compare
PP_0406 -0.9 -2.7 Nucleotidyltransferase family protein compare
PP_4482 -0.9 -3.2 Transcriptional regulator, AraC family compare
PP_3417 -0.9 -4.1 D-gluconate transporter compare
PP_0593 -0.9 -1.3 putative ribosome-binding factor compare
PP_2336 -0.8 -2.8 aconitate hydratase 1 compare
PP_2088 -0.8 -2.4 RNA polymerase sigma factor SigX compare
PP_4264 -0.8 -5.4 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_2327 -0.8 -3.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5145 -0.8 -7.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_5303 -0.8 -3.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0846 -0.8 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_0962 -0.8 -2.2 toluene-tolerance protein compare
PP_4480 -0.8 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_4964 -0.8 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_4874 -0.8 -1.1 50S ribosomal protein L9 compare
PP_1041 -0.8 -1.3 twin arginine protein export complex subunit compare
PP_3828 -0.8 -5.3 Molybdate-binding periplasmic protein compare
PP_5233 -0.8 -4.2 ammonium transporter AmtB compare
PP_3539 -0.8 -1.9 putative Transcriptional regulator compare
PP_0378 -0.8 -5.2 Pyrroloquinoline-quinone synthase compare
PP_1269 -0.8 -1.4 Universal stress protein family compare
PP_4597 -0.8 -4.1 Cyclic pyranopterin monophosphate synthase compare
PP_0001 -0.8 -1.3 probable chromosome-partitioning protein compare
PP_1860 -0.7 -3.5 Organic hydroperoxide resistance transcriptional regulator compare
PP_5201 -0.7 -2.4 conserved protein of unknown function, UPF0149 family compare
PP_1208 -0.7 -2.0 conserved protein of unknown function, SlyX family compare
PP_0910 -0.7 -3.7 conserved exported protein of unknown function compare
PP_0362 -0.7 -5.6 Biotin synthase compare
PP_1304 -0.7 -4.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2285 -0.7 -2.8 conserved exported protein of unknown function compare
PP_2217 -0.7 -2.0 enoyl-CoA hydratase compare
PP_1444 -0.7 -5.9 quinoprotein glucose dehydrogenase compare
PP_4994 -0.7 -2.0 conserved protein of unknown function compare
PP_5514 -0.7 -2.4 conserved protein of unknown function compare
PP_0872 -0.7 -3.7 Peptide chain release factor 3 compare
PP_4880 -0.7 -4.5 exoribonuclease R compare
PP_1777 -0.7 -4.9 phosphomannomutase compare
PP_4560 -0.7 -2.0 putative Ribonuclease BN compare
PP_4268 -0.7 -1.7 nucleoid-associated broad specificity regulator compare
PP_3903 -0.7 -1.6 conserved protein of unknown function compare
PP_0978 -0.7 -2.1 conserved protein of unknown function compare
PP_0393 -0.7 -1.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1353 -0.7 -2.0 conserved membrane protein of unknown function compare
PP_0735 -0.6 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_1734 -0.6 -2.3 Probable septum site-determining protein MinC compare
PP_3829 -0.6 -2.4 Molybdenum transport system permease protein ModB compare
PP_4044 -0.6 -2.3 conserved protein of unknown function compare
PP_3726 -0.6 -0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_5582 -0.6 -1.4 conserved protein of unknown function compare
PP_4824 -0.6 -3.4 Sensor histidine kinase/response regulator compare
PP_5232 -0.6 -1.1 conserved protein of unknown function compare
PP_0127 -0.6 -2.3 Thiol:disulfide interchange protein compare
PP_1605 -0.6 -1.4 Ribonuclease HII compare
PP_4984 -0.6 -4.5 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5717 -0.6 -2.0 conserved protein of unknown function compare
PP_1000 -0.6 -2.2 ornithine carbamoyltransferase, catabolic compare
PP_1428 -0.6 -0.9 Sigma factor AlgU negative regulatory protein compare
PP_0376 -0.6 -4.0 Coenzyme PQQ synthesis protein E compare
PP_0377 -0.6 -1.8 coenzyme PQQ synthesis protein D compare
PP_3830 -0.6 -4.2 Molybdenum import ATP-binding protein ModC compare
PP_5035 -0.6 -3.6 Histidine utilization repressor compare
PP_5110 -0.6 -1.9 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_4356 -0.6 -2.0 Flagellar protein FliO compare
PP_2806 -0.6 -2.4 Transcriptional regulator, TetR family compare
PP_5253 -0.6 -2.1 Arylesterase compare
PP_2429 -0.6 -1.8 putative Membrane protein compare
PP_1800 -0.6 -4.4 Oxidoreductase Rmd compare
PP_0365 -0.6 -3.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms