Experiment set17IT034 for Pseudomonas putida KT2440

Compare to:

Soil Extract with D-Glucose 10 mM; 30C

200 most important genes:

  gene name fitness t score description  
PP_4058 -5.9 -11.9 1,4-alpha-glucan branching enzyme compare
PP_0293 -4.5 -3.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2168 -4.1 -11.3 Transaldolase compare
PP_5014 -3.8 -5.2 Phosphoribosyl-AMP cyclohydrolase compare
PP_0083 -3.7 -10.1 tryptophan synthase beta chain compare
PP_1995 -3.5 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1988 -3.5 -8.4 3-isopropylmalate dehydrogenase compare
PP_0184 -3.3 -9.5 Argininosuccinate lyase compare
PP_0082 -3.3 -8.1 tryptophan synthase alpha chain compare
PP_0290 -3.3 -9.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2088 -3.2 -4.6 RNA polymerase sigma factor SigX compare
PP_1986 -3.2 -5.7 3-isopropylmalate dehydratase small subunit compare
PP_5155 -3.2 -4.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5047 -3.1 -10.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1589 -3.1 -11.4 uridylyltransferase compare
PP_1985 -3.0 -4.8 3-isopropylmalate dehydratase large subunit compare
PP_5048 -3.0 -7.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4909 -3.0 -9.8 phosphoserine phosphatase compare
PP_5185 -2.9 -8.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0735 -2.9 -3.3 molybdopterin-synthase adenylyltransferase compare
PP_3511 -2.8 -7.7 Branched-chain-amino-acid aminotransferase compare
PP_5075 -2.8 -14.8 glutamate synthase (NADPH) beta subunit compare
PP_4890 -2.8 -5.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_5076 -2.7 -17.0 L-glutamate synthase(NADPH) alpha subunit compare
PP_1778 -2.7 -10.1 Lipopolysaccharide ABC export system, permease protein compare
PP_4696 -2.7 -7.7 Nitrogen regulation protein NR(I) compare
PP_4902 -2.7 -4.8 Oligoribonuclease compare
PP_4678 -2.7 -15.4 Ketol-acid reductoisomerase compare
PP_1088 -2.6 -11.8 Argininosuccinate synthase compare
PP_0274 -2.6 -3.2 putative transcriptional regulator containing HTH domain compare
PP_4679 -2.6 -9.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -2.6 -16.1 Anthranilate synthase component 1 compare
PP_1898 -2.5 -3.8 MotA/TolQ/ExbB proton channel family protein compare
PP_0967 -2.4 -11.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -2.4 -12.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0289 -2.4 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_2328 -2.4 -7.1 Phosphoadenosine phosphosulfate reductase compare
PP_1779 -2.4 -8.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0421 -2.4 -8.6 Anthranilate phosphoribosyltransferase compare
PP_0422 -2.3 -7.9 Indole-3-glycerol phosphate synthase compare
PP_2092 -2.3 -12.3 Nitrate transporter compare
PP_0965 -2.3 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2001 -2.3 -10.8 O-succinylhomoserine sulfhydrylase compare
PP_5097 -2.3 -12.3 homoserine O-acetyltransferase compare
PP_1293 -2.2 -4.0 molybdopterin synthase small subunit compare
PP_5289 -2.2 -6.3 Acetylglutamate kinase compare
PP_0420 -2.2 -10.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0966 -2.2 -11.6 Histidinol dehydrogenase compare
PP_5128 -2.2 -7.2 Dihydroxy-acid dehydratase compare
PP_1224 -2.2 -8.6 periplasmic subunit of the TolQRA transport system compare
PP_0292 -2.2 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1705 -2.1 -9.4 nitrite reductase [NAD(P)H] large subunit compare
PP_1079 -2.1 -5.3 Ornithine carbamoyltransferase compare
PP_4804 -2.1 -3.1 RlpA-like lipoprotein compare
PP_5098 -2.1 -6.9 methionine biosynthesis protein MetW compare
PP_1022 -2.0 -6.9 glucose 6-phosphate-1-dehydrogenase compare
PP_3999 -2.0 -7.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0691 -2.0 -1.4 Glutamate 5-kinase compare
PP_0846 -1.9 -1.6 DnaK-like molecular chaperone specific for IscU compare
PP_2402 -1.9 -3.5 putative Sensor histidine kinase compare
PP_4060 -1.9 -12.8 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1706 -1.8 -6.8 Nitrite reductase compare
PP_0406 -1.8 -3.5 Nucleotidyltransferase family protein compare
PP_2371 -1.8 -5.6 Sulphite reductase hemoprotein, beta subunit compare
PP_1233 -1.8 -4.7 sulfurtransferase compare
PP_4724 -1.8 -1.7 Carbamoyl-phosphate synthase small chain compare
PP_4895 -1.8 -3.5 tRNA dimethylallyltransferase compare
PP_2122 -1.8 -4.5 molybdenum cofactor biosynthesis protein B compare
PP_2093 -1.8 -9.2 NasT compare
PP_1025 -1.8 -9.5 2-isopropylmalate synthase compare
PP_4008 -1.7 -7.8 ATP-dependent serine protease compare
PP_1198 -1.7 -3.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3829 -1.7 -5.3 Molybdenum transport system permease protein ModB compare
PP_1734 -1.7 -4.6 Probable septum site-determining protein MinC compare
PP_1703 -1.7 -12.3 assimilatory nitrate reductase/sulfite reductase compare
PP_4785 -1.7 -6.3 conserved exported protein of unknown function compare
PP_1654 -1.7 -2.7 cysteine synthase B compare
PP_2370 -1.6 -4.3 conserved protein of unknown function compare
PP_5348 -1.6 -8.1 Transcriptional regulator, LysR family compare
PP_0719 -1.6 -2.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0339 -1.6 -3.0 Pyruvate dehydrogenase E1 component compare
PP_4723 -1.6 -1.1 Carbamoyl-phosphate synthase large chain compare
PP_0164 -1.6 -7.6 conserved protein of unknown function compare
PP_0393 -1.6 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1292 -1.5 -7.4 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_3828 -1.5 -9.0 Molybdate-binding periplasmic protein compare
PP_4695 -1.5 -10.3 Sensory box histidine kinase compare
PP_2217 -1.5 -4.0 enoyl-CoA hydratase compare
PP_0949 -1.5 -5.7 putative ATP-binding protein UPF0042 compare
PP_2123 -1.5 -8.4 molybdenum::molybdopterin ligase compare
PP_5015 -1.4 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1110 -1.4 -5.4 serine acetyltransferase compare
PP_2094 -1.3 -4.9 putative Nitrate-binding protein NasS compare
PP_1012 -1.3 -6.0 DNA-binding response regulator compare
PP_1217 -1.3 -4.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5095 -1.3 -1.4 pyrroline-5-carboxylate reductase compare
PP_5346 -1.3 -6.6 pyruvate carboxylase subunit B compare
PP_4597 -1.3 -4.8 Cyclic pyranopterin monophosphate synthase compare
PP_2322 -1.3 -5.2 Major outer membrane lipoprotein compare
PP_1011 -1.3 -6.3 glucokinase compare
PP_0914 -1.3 -8.3 GGDEF domain protein compare
PP_1013 -1.3 -7.0 Sensor histidine kinase compare
PP_5217 -1.2 -8.9 Polyphosphate kinase compare
PP_5233 -1.2 -7.4 ammonium transporter AmtB compare
PP_0397 -1.2 -9.7 protein kinase compare
PP_0291 -1.2 -3.1 conserved protein of unknown function compare
PP_1015 -1.2 -7.6 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_1202 -1.2 -9.2 putative enzyme involved in modification of phospholipids compare
PP_3830 -1.2 -8.0 Molybdenum import ATP-binding protein ModC compare
PP_1623 -1.2 -8.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_1493 -1.2 -2.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0396 -1.2 -9.1 conserved protein of unknown function compare
PP_1237 -1.1 -2.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1294 -1.1 -3.0 molybdopterin synthase large subunit compare
PP_5303 -1.1 -4.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4364 -1.1 -3.8 putative Anti-sigma F factor antagonist compare
PP_1201 -1.1 -4.7 conserved exported protein of unknown function compare
PP_1018 -1.1 -6.5 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_4874 -1.1 -1.5 50S ribosomal protein L9 compare
PP_0395 -1.1 -8.6 putative type IV piliation protein compare
PP_2999 -1.1 -2.2 Glyoxalase family protein compare
PP_5347 -1.1 -6.8 pyruvate carboxylase subunit A compare
PP_1017 -1.0 -5.1 mannose/glucose ABC transporter, permease protein conserved
PP_1304 -1.0 -6.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5328 -1.0 -2.1 putative phosphate transport system permease protein compare
PP_4271 -1.0 -1.7 conserved protein of unknown function compare
PP_4700 -1.0 -2.4 pantothenate synthetase compare
PP_1664 -1.0 -2.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_1109 -1.0 -6.7 Transcriptional regulator, GntR family compare
PP_1016 -0.9 -6.7 mannose/glucose ABC transporter, permease protein conserved
PP_2320 -0.9 -6.5 conserved exported protein of unknown function compare
PP_0377 -0.9 -2.1 coenzyme PQQ synthesis protein D compare
PP_1362 -0.9 -3.9 pyruvate kinase II compare
PP_4265 -0.9 -1.1 DNA-binding transcriptional dual regulator compare
PP_1325 -0.9 -5.2 putative lipoprotein compare
PP_3484 -0.9 -4.4 Response regulator receiver protein compare
PP_2414 -0.9 -0.9 conserved exported protein of unknown function compare
PP_2000 -0.8 -1.1 amidophosphoribosyl transferase compare
PP_0127 -0.8 -3.0 Thiol:disulfide interchange protein compare
PP_2144 -0.8 -3.2 Transcriptional regulator, TetR family compare
PP_1733 -0.8 -2.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_0787 -0.8 -3.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5084 -0.8 -5.7 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_1764 -0.8 -2.3 Phosphoglycolate phosphatase 2 compare
PP_2302 -0.8 -4.2 DNA-binding, ATP-dependent protease compare
PP_1801 -0.8 -5.9 Glycosyl transferase WbpY compare
PP_0937 -0.8 -2.8 endoribonuclease G (RNAse G) compare
PP_0376 -0.8 -5.0 Coenzyme PQQ synthesis protein E compare
PP_1780 -0.8 -6.8 putative mannosyltransferase compare
PP_0362 -0.8 -5.6 Biotin synthase compare
PP_2433 -0.7 -1.2 conserved protein of unknown function compare
PP_2820 -0.7 -2.2 HTH-type transcriptional regulator nfxB compare
PP_1353 -0.7 -2.1 conserved membrane protein of unknown function compare
PP_2327 -0.7 -2.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5350 -0.7 -2.2 Transcriptional regulator, RpiR family compare
PP_1776 -0.7 -5.8 Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyltransferase compare
PP_4268 -0.7 -1.7 nucleoid-associated broad specificity regulator compare
PP_4880 -0.7 -4.7 exoribonuclease R compare
PP_4009 -0.7 -3.0 ATP-dependent Clp protease adapter protein ClpS compare
PP_2700 -0.7 -1.9 AhpC/TSA family protein compare
PP_4098 -0.7 -2.3 UvrABC system protein C compare
PP_1231 -0.7 -3.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1444 -0.7 -5.7 quinoprotein glucose dehydrogenase compare
PP_5054 -0.7 -1.5 glutaredoxin 3 compare
PP_3417 -0.7 -3.6 D-gluconate transporter compare
PP_2499 -0.7 -1.8 conserved protein of unknown function compare
PP_1111 -0.7 -3.7 putative Synthetase compare
PP_5329 -0.7 -1.7 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2087 -0.7 -1.4 CmpX protein compare
PP_1663 -0.7 -4.8 conserved exported protein of unknown function compare
PP_0381 -0.7 -4.1 Coenzyme PQQ synthesis protein F compare
PP_4693 -0.7 -2.4 RNA polymerase-binding transcription factor DksA compare
PP_1824 -0.7 -2.0 Smr domain protein compare
PP_0364 -0.7 -4.4 pimeloyl-[acp] methyl ester esterase compare
PP_2883 -0.7 -1.9 conserved protein of unknown function compare
PP_3946 -0.7 -0.9 HTH-type transcriptional repressor NicR compare
PP_1802 -0.7 -5.7 glycosyl transferase compare
PP_1303 -0.7 -3.6 Sulfate adenylyltransferase subunit 2 compare
PP_2341 -0.7 -1.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_2615 -0.7 -2.3 hemolysin-coregulated protein compare
PP_4560 -0.7 -1.9 putative Ribonuclease BN compare
PP_2145 -0.7 -2.1 beta-N-acetylglucosaminidase compare
PP_3730 -0.7 -2.0 Transcriptional regulatory protein AruR compare
PP_0834 -0.7 -2.1 Sec translocation complex subunit YajC compare
PP_1216 -0.7 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1804 -0.6 -4.2 Glycosyl transferase WbpL compare
PP_3833 -0.6 -2.5 Response regulator compare
PP_4004 -0.6 -2.8 DNA translocase FtsK compare
PP_4940 -0.6 -4.4 Putative glycosyltransferase compare
PP_0363 -0.6 -5.0 8-amino-7-oxononanoate synthase compare
PP_3098 -0.6 -1.3 conserved protein of unknown function compare
PP_1215 -0.6 -0.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_1805 -0.6 -5.5 Polysaccharide biosynthesis protein compare
PP_0957 -0.6 -1.7 D-arabinose 5-phosphate isomerase compare
PP_1099 -0.6 -2.0 Cold shock protein CapB compare
PP_4143 -0.6 -2.3 conserved protein of unknown function compare
PP_1364 -0.6 -4.2 conserved exported protein of unknown function compare
PP_1020 -0.6 -1.8 putative glucose-6-phosphate 1-epimerase compare
PP_3332 -0.6 -2.5 putative cytochrome c-type protein compare
PP_4471 -0.6 -1.9 Magnesium transporter compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms