Experiment set17IT033 for Pseudomonas putida KT2440

Compare to:

Soil Extract with D-Glucose 10 mM; 30C

200 most important genes:

  gene name fitness t score description  
PP_4058 -5.2 -14.7 1,4-alpha-glucan branching enzyme compare
PP_0082 -4.2 -8.7 tryptophan synthase alpha chain compare
PP_5095 -3.9 -2.7 pyrroline-5-carboxylate reductase compare
PP_5047 -3.6 -9.1 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_2168 -3.5 -11.0 Transaldolase compare
PP_0293 -3.5 -2.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5048 -3.4 -9.8 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0290 -3.4 -9.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1985 -3.3 -8.2 3-isopropylmalate dehydratase large subunit compare
PP_2088 -3.3 -5.8 RNA polymerase sigma factor SigX compare
PP_1293 -3.2 -3.5 molybdopterin synthase small subunit compare
PP_4909 -3.0 -8.9 phosphoserine phosphatase compare
PP_1589 -3.0 -12.5 uridylyltransferase compare
PP_1706 -3.0 -6.5 Nitrite reductase compare
PP_0184 -3.0 -8.3 Argininosuccinate lyase compare
PP_4696 -3.0 -7.6 Nitrogen regulation protein NR(I) compare
PP_0083 -3.0 -8.4 tryptophan synthase beta chain compare
PP_3511 -2.9 -9.9 Branched-chain-amino-acid aminotransferase compare
PP_5076 -2.8 -16.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_5075 -2.8 -12.8 glutamate synthase (NADPH) beta subunit compare
PP_0422 -2.7 -8.5 Indole-3-glycerol phosphate synthase compare
PP_1995 -2.7 -10.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0967 -2.7 -12.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4680 -2.7 -16.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -2.7 -14.7 Ketol-acid reductoisomerase compare
PP_1705 -2.6 -12.9 nitrite reductase [NAD(P)H] large subunit compare
PP_1079 -2.6 -8.1 Ornithine carbamoyltransferase compare
PP_1778 -2.6 -9.1 Lipopolysaccharide ABC export system, permease protein compare
PP_0420 -2.6 -12.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1988 -2.6 -9.5 3-isopropylmalate dehydrogenase compare
PP_0417 -2.6 -17.3 Anthranilate synthase component 1 compare
PP_0292 -2.5 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0289 -2.5 -7.8 Imidazoleglycerol-phosphate dehydratase compare
PP_1233 -2.5 -6.2 sulfurtransferase compare
PP_1986 -2.5 -5.2 3-isopropylmalate dehydratase small subunit compare
PP_5014 -2.5 -5.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0421 -2.4 -7.7 Anthranilate phosphoribosyltransferase compare
PP_5097 -2.3 -12.1 homoserine O-acetyltransferase compare
PP_2093 -2.3 -11.4 NasT compare
PP_5098 -2.3 -8.9 methionine biosynthesis protein MetW compare
PP_1088 -2.3 -12.2 Argininosuccinate synthase compare
PP_0965 -2.3 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5155 -2.2 -4.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0966 -2.2 -11.3 Histidinol dehydrogenase compare
PP_4890 -2.2 -8.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_5289 -2.2 -6.7 Acetylglutamate kinase compare
PP_2001 -2.2 -11.3 O-succinylhomoserine sulfhydrylase compare
PP_2370 -2.1 -2.4 conserved protein of unknown function compare
PP_2092 -2.1 -11.9 Nitrate transporter compare
PP_3999 -2.1 -6.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4724 -2.1 -1.4 Carbamoyl-phosphate synthase small chain compare
PP_0949 -2.0 -8.5 putative ATP-binding protein UPF0042 compare
PP_5185 -2.0 -8.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5128 -2.0 -8.2 Dihydroxy-acid dehydratase compare
PP_4679 -2.0 -7.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4902 -2.0 -3.2 Oligoribonuclease compare
PP_1654 -2.0 -3.0 cysteine synthase B compare
PP_2328 -2.0 -6.7 Phosphoadenosine phosphosulfate reductase compare
PP_1779 -2.0 -7.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1025 -1.9 -9.2 2-isopropylmalate synthase compare
PP_0164 -1.9 -7.7 conserved protein of unknown function compare
PP_5015 -1.9 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1224 -1.9 -8.1 periplasmic subunit of the TolQRA transport system compare
PP_2122 -1.8 -4.5 molybdenum cofactor biosynthesis protein B compare
PP_4008 -1.8 -8.0 ATP-dependent serine protease compare
PP_4060 -1.8 -12.2 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4804 -1.8 -3.1 RlpA-like lipoprotein compare
PP_3829 -1.7 -6.5 Molybdenum transport system permease protein ModB compare
PP_1703 -1.7 -12.1 assimilatory nitrate reductase/sulfite reductase compare
PP_2123 -1.7 -9.0 molybdenum::molybdopterin ligase compare
PP_0691 -1.7 -1.9 Glutamate 5-kinase compare
PP_4785 -1.7 -5.0 conserved exported protein of unknown function compare
PP_0339 -1.6 -2.9 Pyruvate dehydrogenase E1 component compare
PP_2371 -1.6 -6.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4723 -1.6 -1.1 Carbamoyl-phosphate synthase large chain compare
PP_2402 -1.6 -3.0 putative Sensor histidine kinase compare
PP_4695 -1.5 -9.5 Sensory box histidine kinase compare
PP_0291 -1.5 -3.2 conserved protein of unknown function compare
PP_1012 -1.5 -6.3 DNA-binding response regulator compare
PP_0914 -1.5 -8.1 GGDEF domain protein compare
PP_1294 -1.5 -6.1 molybdopterin synthase large subunit compare
PP_1022 -1.5 -5.2 glucose 6-phosphate-1-dehydrogenase compare
PP_0274 -1.5 -2.8 putative transcriptional regulator containing HTH domain compare
PP_2336 -1.5 -4.1 aconitate hydratase 1 compare
PP_1110 -1.5 -5.9 serine acetyltransferase compare
PP_1017 -1.5 -6.5 mannose/glucose ABC transporter, permease protein conserved
PP_1011 -1.4 -9.1 glucokinase compare
PP_1493 -1.4 -3.7 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1292 -1.4 -5.5 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_5347 -1.4 -8.8 pyruvate carboxylase subunit A compare
PP_1734 -1.3 -3.9 Probable septum site-determining protein MinC compare
PP_3828 -1.3 -7.8 Molybdate-binding periplasmic protein compare
PP_1623 -1.3 -9.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_0513 -1.3 -3.0 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_2322 -1.3 -3.9 Major outer membrane lipoprotein compare
PP_1664 -1.3 -2.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_2145 -1.3 -3.1 beta-N-acetylglucosaminidase compare
PP_5217 -1.3 -9.2 Polyphosphate kinase compare
PP_5348 -1.3 -6.5 Transcriptional regulator, LysR family compare
PP_0396 -1.3 -9.9 conserved protein of unknown function compare
PP_2094 -1.3 -4.9 putative Nitrate-binding protein NasS compare
PP_4597 -1.3 -5.9 Cyclic pyranopterin monophosphate synthase compare
PP_2302 -1.2 -4.8 DNA-binding, ATP-dependent protease compare
PP_1018 -1.2 -7.3 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_1015 -1.2 -7.5 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_0406 -1.2 -3.4 Nucleotidyltransferase family protein compare
PP_5346 -1.2 -5.6 pyruvate carboxylase subunit B compare
PP_1217 -1.2 -3.8 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3830 -1.2 -7.8 Molybdenum import ATP-binding protein ModC compare
PP_5303 -1.2 -5.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1198 -1.2 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0395 -1.2 -8.8 putative type IV piliation protein compare
PP_1202 -1.2 -9.3 putative enzyme involved in modification of phospholipids compare
PP_5233 -1.1 -6.0 ammonium transporter AmtB compare
PP_1016 -1.0 -5.6 mannose/glucose ABC transporter, permease protein conserved
PP_0735 -1.0 -2.2 molybdopterin-synthase adenylyltransferase compare
PP_1362 -1.0 -3.3 pyruvate kinase II compare
PP_0397 -1.0 -8.6 protein kinase compare
PP_2320 -1.0 -7.7 conserved exported protein of unknown function compare
PP_2820 -1.0 -4.0 HTH-type transcriptional regulator nfxB compare
PP_1201 -1.0 -4.9 conserved exported protein of unknown function compare
PP_0127 -1.0 -4.3 Thiol:disulfide interchange protein compare
PP_4009 -1.0 -3.9 ATP-dependent Clp protease adapter protein ClpS compare
PP_4004 -1.0 -3.9 DNA translocase FtsK compare
PP_1764 -1.0 -2.0 Phosphoglycolate phosphatase 2 compare
PP_1111 -1.0 -4.5 putative Synthetase compare
PP_1013 -1.0 -4.6 Sensor histidine kinase compare
PP_2327 -1.0 -4.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4994 -1.0 -3.5 conserved protein of unknown function compare
PP_4098 -0.9 -1.8 UvrABC system protein C compare
PP_1304 -0.9 -5.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1999 -0.9 -1.8 membrane protein required for colicin V production compare
PP_1366 -0.9 -1.8 Transcriptional regulator MvaT, P16 subunit compare
PP_4265 -0.9 -1.1 DNA-binding transcriptional dual regulator compare
PP_2217 -0.9 -2.8 enoyl-CoA hydratase compare
PP_2000 -0.9 -1.2 amidophosphoribosyl transferase compare
PP_0846 -0.9 -1.0 DnaK-like molecular chaperone specific for IscU compare
PP_2414 -0.8 -1.0 conserved exported protein of unknown function compare
PP_4693 -0.8 -3.0 RNA polymerase-binding transcription factor DksA compare
PP_3649 -0.8 -4.0 Transcriptional regulator, GntR family compare
PP_5028 -0.8 -3.3 proline iminopeptidase compare
PP_0753 -0.8 -4.6 putative Lipoprotein compare
PP_1444 -0.8 -6.4 quinoprotein glucose dehydrogenase compare
PP_0683 -0.8 -3.3 conserved protein of unknown function compare
PP_5652 -0.8 -1.8 conserved protein of unknown function, phage origin compare
PP_0377 -0.8 -1.4 coenzyme PQQ synthesis protein D compare
PP_1663 -0.8 -4.9 conserved exported protein of unknown function compare
PP_1109 -0.8 -5.5 Transcriptional regulator, GntR family compare
PP_0848 -0.8 -2.0 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0378 -0.8 -4.7 Pyrroloquinoline-quinone synthase compare
PP_0937 -0.7 -3.2 endoribonuclease G (RNAse G) compare
PP_2090 -0.7 -3.3 Uroporphyrinogen-III C-methyltransferase compare
PP_4532 -0.7 -1.6 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_3318 -0.7 -1.9 conserved protein of unknown function compare
PP_0362 -0.7 -5.6 Biotin synthase compare
PP_4369 -0.7 -4.4 Flagellar M-ring protein compare
PP_4126 -0.7 -1.3 NADH-quinone oxidoreductase subunit I compare
PP_2793 -0.7 -1.4 Acyl-CoA dehydrogenase family protein compare
PP_0261 -0.7 -2.9 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4471 -0.7 -3.3 Magnesium transporter compare
PP_1780 -0.7 -6.4 putative mannosyltransferase compare
PP_1468 -0.7 -1.6 Tyrosine recombinase XerD compare
PP_3637 -0.7 -1.4 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_3880 -0.7 -1.5 conserved exported protein of unknown function compare
PP_4829 -0.7 -2.3 putative precorrin-3B synthase compare
PP_4793 -0.7 -1.1 conserved protein of unknown function compare
PP_2433 -0.7 -1.4 conserved protein of unknown function compare
PP_4988 -0.7 -3.8 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4368 -0.7 -2.8 flagellar motor switch protein compare
PP_5000 -0.7 -1.8 peptidase component of the ATP-dependent HslVU protease compare
PP_0380 -0.7 -3.2 Coenzyme PQQ synthesis protein A compare
PP_3241 -0.7 -1.3 conserved exported protein of unknown function compare
PP_0833 -0.7 -1.1 queuine tRNA-ribosyltransferase compare
PP_5084 -0.7 -4.7 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5093 -0.7 -1.5 twitching motility protein compare
PP_5619 -0.7 -3.1 protein of unknown function compare
PP_4700 -0.6 -1.7 pantothenate synthetase compare
PP_0787 -0.6 -3.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_2307 -0.6 -1.8 conserved protein of unknown function compare
PP_1801 -0.6 -4.6 Glycosyl transferase WbpY compare
PP_1802 -0.6 -5.6 glycosyl transferase compare
PP_4984 -0.6 -4.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_2378 -0.6 -1.7 Fe/S biogenesis protein NfuA compare
PP_1215 -0.6 -1.6 Crossover junction endodeoxyribonuclease RuvC compare
PP_1649 -0.6 -2.1 D-lactate dehydrogenase compare
PP_0839 -0.6 -2.1 tRNA Cm32/Um32 methyltransferase compare
PP_3824 -0.6 -1.7 conserved exported protein of unknown function compare
PP_0775 -0.6 -1.2 conserved protein of unknown function compare
PP_4264 -0.6 -3.9 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_2152 -0.6 -2.3 glycerophosphoryl diester phosphodiesterase compare
PP_0376 -0.6 -4.5 Coenzyme PQQ synthesis protein E compare
PP_1002 -0.6 -2.8 arginine/ornithine antiporter compare
PP_2592 -0.6 -2.8 Ferric siderophore ABC transporter, ATP-binding protein compare
PP_5328 -0.6 -1.6 putative phosphate transport system permease protein compare
PP_1325 -0.6 -3.8 putative lipoprotein compare
PP_1231 -0.6 -3.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_3312 -0.6 -1.3 putative Heat shock protein compare
PP_0856 -0.6 -1.2 conserved lipoprotein of unknown function compare
PP_3307 -0.6 -1.4 conserved protein of unknown function compare
PP_1041 -0.6 -1.3 twin arginine protein export complex subunit compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms