Experiment set17IT032 for Pseudomonas putida KT2440

Compare to:

M9 minimal media_noCarbon with D-Glucose 10 mM; 15C

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.8 -5.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4679 -6.2 -9.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1985 -6.0 -7.0 3-isopropylmalate dehydratase large subunit compare
PP_0082 -5.2 -9.9 tryptophan synthase alpha chain compare
PP_1988 -5.0 -10.3 3-isopropylmalate dehydrogenase compare
PP_0083 -5.0 -10.6 tryptophan synthase beta chain compare
PP_0290 -4.9 -11.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -4.8 -10.3 phosphoserine phosphatase compare
PP_1778 -4.5 -9.3 Lipopolysaccharide ABC export system, permease protein compare
PP_1986 -4.4 -5.2 3-isopropylmalate dehydratase small subunit compare
PP_0289 -4.4 -9.0 Imidazoleglycerol-phosphate dehydratase compare
PP_5098 -4.3 -10.3 methionine biosynthesis protein MetW compare
PP_5097 -4.2 -16.2 homoserine O-acetyltransferase compare
PP_5095 -4.2 -2.9 pyrroline-5-carboxylate reductase compare
PP_2168 -4.2 -12.0 Transaldolase compare
PP_4058 -4.1 -15.2 1,4-alpha-glucan branching enzyme compare
PP_4678 -4.0 -15.8 Ketol-acid reductoisomerase compare
PP_5185 -4.0 -10.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0967 -3.9 -12.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_3999 -3.9 -10.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4696 -3.8 -8.4 Nitrogen regulation protein NR(I) compare
PP_0422 -3.8 -6.9 Indole-3-glycerol phosphate synthase compare
PP_0966 -3.7 -12.0 Histidinol dehydrogenase compare
PP_4680 -3.7 -14.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5128 -3.6 -9.1 Dihydroxy-acid dehydratase compare
PP_2388 -3.6 -5.7 Transporter, LysE family compare
PP_1088 -3.6 -14.7 Argininosuccinate synthase compare
PP_5014 -3.6 -5.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_5289 -3.5 -6.3 Acetylglutamate kinase compare
PP_3511 -3.5 -8.7 Branched-chain-amino-acid aminotransferase compare
PP_0417 -3.4 -17.7 Anthranilate synthase component 1 compare
PP_0184 -3.4 -7.9 Argininosuccinate lyase compare
PP_5015 -3.4 -4.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4890 -3.3 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_0421 -3.3 -8.0 Anthranilate phosphoribosyltransferase compare
PP_2001 -3.2 -11.1 O-succinylhomoserine sulfhydrylase compare
PP_0292 -3.1 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0420 -3.1 -11.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3376 -3.0 -9.2 putative phosphonate dehydrogenase compare
PP_2371 -3.0 -6.8 Sulphite reductase hemoprotein, beta subunit compare
PP_1779 -3.0 -7.5 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5155 -3.0 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0965 -2.9 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5347 -2.9 -11.6 pyruvate carboxylase subunit A compare
PP_5348 -2.9 -10.9 Transcriptional regulator, LysR family compare
PP_1995 -2.8 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5346 -2.7 -9.7 pyruvate carboxylase subunit B compare
PP_5145 -2.6 -20.8 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_1022 -2.5 -7.7 glucose 6-phosphate-1-dehydrogenase compare
PP_1079 -2.5 -9.0 Ornithine carbamoyltransferase compare
PP_1237 -2.4 -2.7 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2328 -2.3 -5.9 Phosphoadenosine phosphosulfate reductase compare
PP_2402 -2.1 -3.1 putative Sensor histidine kinase compare
PP_5303 -2.1 -6.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4874 -2.1 -3.1 50S ribosomal protein L9 compare
PP_0339 -2.1 -2.8 Pyruvate dehydrogenase E1 component compare
PP_0691 -2.1 -1.4 Glutamate 5-kinase compare
PP_0393 -2.0 -3.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2327 -1.9 -5.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4804 -1.9 -3.4 RlpA-like lipoprotein compare
PP_4008 -1.9 -8.0 ATP-dependent serine protease compare
PP_1664 -1.9 -4.3 phosphoribosylglycinamide formyltransferase 1 compare
PP_4724 -1.9 -1.8 Carbamoyl-phosphate synthase small chain compare
PP_2390 -1.8 -7.1 Transcriptional regulator, LysR family compare
PP_1912 -1.8 -4.9 Phosphate acyltransferase compare
PP_4723 -1.8 -1.2 Carbamoyl-phosphate synthase large chain compare
PP_1025 -1.7 -6.1 2-isopropylmalate synthase compare
PP_1198 -1.6 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4902 -1.6 -2.7 Oligoribonuclease compare
PP_5328 -1.6 -3.2 putative phosphate transport system permease protein compare
PP_1017 -1.6 -8.6 mannose/glucose ABC transporter, permease protein conserved
PP_4060 -1.6 -10.4 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_5035 -1.5 -8.1 Histidine utilization repressor compare
PP_0948 -1.5 -2.5 Phosphocarrier protein HPr compare
PP_4695 -1.5 -9.0 Sensory box histidine kinase compare
PP_0362 -1.5 -10.9 Biotin synthase compare
PP_1013 -1.4 -7.0 Sensor histidine kinase compare
PP_1012 -1.4 -6.9 DNA-binding response regulator compare
PP_1016 -1.4 -8.6 mannose/glucose ABC transporter, permease protein conserved
PP_2370 -1.4 -2.2 conserved protein of unknown function compare
PP_1231 -1.4 -4.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0291 -1.4 -2.1 conserved protein of unknown function compare
PP_0787 -1.4 -4.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4984 -1.4 -8.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1015 -1.4 -7.6 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_0758 -1.4 -5.9 conserved protein of unknown function compare
PP_0366 -1.4 -7.6 dethiobiotin synthetase compare
PP_0164 -1.3 -7.8 conserved protein of unknown function compare
PP_2433 -1.3 -2.1 conserved protein of unknown function compare
PP_1018 -1.3 -5.9 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_5546 -1.3 -2.6 conserved protein of unknown function compare
PP_5216 -1.3 -2.6 exopolyphosphatase compare
PP_0872 -1.2 -5.7 Peptide chain release factor 3 compare
PP_4895 -1.2 -2.9 tRNA dimethylallyltransferase compare
PP_4726 -1.2 -3.0 Chaperone protein DnaJ compare
PP_4693 -1.2 -4.3 RNA polymerase-binding transcription factor DksA compare
PP_4009 -1.2 -4.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_4265 -1.2 -1.1 DNA-binding transcriptional dual regulator compare
PP_0401 -1.2 -2.7 Ribosomal RNA small subunit methyltransferase A compare
PP_3417 -1.2 -5.4 D-gluconate transporter compare
PP_0363 -1.1 -8.1 8-amino-7-oxononanoate synthase compare
PP_1303 -1.1 -5.4 Sulfate adenylyltransferase subunit 2 compare
PP_0364 -1.1 -6.5 pimeloyl-[acp] methyl ester esterase compare
PP_0914 -1.1 -6.5 GGDEF domain protein compare
PP_1493 -1.1 -2.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2581 -1.1 -1.6 conserved protein of unknown function compare
PP_4880 -1.0 -6.1 exoribonuclease R compare
PP_2302 -1.0 -3.9 DNA-binding, ATP-dependent protease compare
PP_0913 -1.0 -5.6 conserved exported protein of unknown function compare
PP_1428 -1.0 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_2226 -1.0 -4.8 putative K(+)/H(+) antiporter subunit F compare
PP_0949 -1.0 -4.4 putative ATP-binding protein UPF0042 compare
PP_1034 -1.0 -7.2 multicopper oxidase compare
PP_4204 -1.0 -3.1 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4379 -1.0 -2.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4126 -1.0 -1.7 NADH-quinone oxidoreductase subunit I compare
PP_0065 -1.0 -3.9 NAD-binding component of TrK potassium transporter compare
PP_1304 -1.0 -5.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1011 -1.0 -5.7 glucokinase compare
PP_4006 -1.0 -5.6 Putative arginyl-tRNA--protein transferase compare
PP_4700 -1.0 -2.6 pantothenate synthetase compare
PP_3649 -1.0 -4.7 Transcriptional regulator, GntR family compare
PP_4964 -1.0 -2.7 D-erythrose 4-phosphate dehydrogenase compare
PP_0396 -1.0 -7.2 conserved protein of unknown function compare
PP_1362 -1.0 -3.2 pyruvate kinase II compare
PP_1322 -0.9 -1.6 putative Lipoprotein compare
PP_0395 -0.9 -7.1 putative type IV piliation protein compare
PP_0376 -0.9 -6.8 Coenzyme PQQ synthesis protein E compare
PP_0127 -0.9 -3.7 Thiol:disulfide interchange protein compare
PP_0365 -0.9 -5.6 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_2121 -0.9 -1.9 putative Lipoprotein compare
PP_5000 -0.9 -2.0 peptidase component of the ATP-dependent HslVU protease compare
PP_2000 -0.9 -1.1 amidophosphoribosyl transferase compare
PP_0397 -0.9 -7.5 protein kinase compare
PP_0910 -0.9 -4.8 conserved exported protein of unknown function compare
PP_1654 -0.9 -1.9 cysteine synthase B compare
PP_3539 -0.9 -2.8 putative Transcriptional regulator compare
PP_4471 -0.9 -2.4 Magnesium transporter compare
PP_0378 -0.9 -5.1 Pyrroloquinoline-quinone synthase compare
PP_5217 -0.9 -7.1 Polyphosphate kinase compare
PP_4860 -0.9 -7.0 putative Mannose-6-phosphate isomerase compare
PP_2378 -0.9 -2.1 Fe/S biogenesis protein NfuA compare
PP_1444 -0.9 -6.1 quinoprotein glucose dehydrogenase compare
PP_4994 -0.8 -3.4 conserved protein of unknown function compare
PP_5329 -0.8 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0909 -0.8 -5.6 conserved exported protein of unknown function compare
PP_2225 -0.8 -4.0 putative Multicomponent potassium-proton antiporter, subunit G compare
PP_1623 -0.8 -5.8 RNA polymerase, sigma S (sigma 38) factor compare
PP_1783 -0.8 -1.7 dTDP-glucose pyrophosphorylase compare
PP_2345 -0.8 -2.7 conserved exported protein of unknown function compare
PP_1319 -0.8 -3.4 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_5393 -0.8 -1.6 putative metal-binding chaperone compare
PP_0908 -0.8 -4.2 conserved exported protein of unknown function compare
PP_4364 -0.8 -3.2 putative Anti-sigma F factor antagonist compare
PP_0084 -0.8 -4.1 HTH-type transcriptional regulator TrpI compare
PP_4560 -0.8 -2.0 putative Ribonuclease BN compare
PP_1589 -0.8 -4.9 uridylyltransferase compare
PP_2820 -0.8 -2.5 HTH-type transcriptional regulator nfxB compare
PP_1353 -0.8 -1.9 conserved membrane protein of unknown function compare
PP_2337 -0.8 -1.9 aconitate isomerase compare
PP_5008 -0.8 -1.9 Poly granule-associated protein compare
PP_5104 -0.8 -4.9 thiazole synthase compare
PP_0801 -0.8 -1.2 conserved exported protein of unknown function compare
PP_0888 -0.7 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_4136 -0.7 -1.3 Transcriptional regulator, LuxR family compare
PP_1734 -0.7 -2.4 Probable septum site-determining protein MinC compare
PP_4253 -0.7 -1.5 cytochrome c oxidase subunit, cbb3-type compare
PP_2414 -0.7 -1.3 conserved exported protein of unknown function compare
PP_4004 -0.7 -2.3 DNA translocase FtsK compare
PP_4766 -0.7 -4.1 ATP-dependent RNA helicase compare
PP_0719 -0.7 -0.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5028 -0.7 -3.1 proline iminopeptidase compare
PP_4699 -0.7 -2.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0063 -0.7 -3.7 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0879 -0.7 -3.4 dipeptide ABC transporter - putative ATP binding subunit compare
PP_1898 -0.7 -1.3 MotA/TolQ/ExbB proton channel family protein compare
PP_5055 -0.7 -3.1 Sulfurtransferase compare
PP_2883 -0.7 -1.8 conserved protein of unknown function compare
PP_5514 -0.7 -2.4 conserved protein of unknown function compare
PP_0379 -0.7 -4.6 Coenzyme PQQ synthesis protein B compare
PP_0980 -0.7 -4.0 Probable cytosol aminopeptidase compare
PP_2475 -0.7 -2.7 Transcriptional regulator, TetR family compare
PP_4782 -0.7 -2.5 Phosphomethylpyrimidine kinase compare
PP_3411 -0.7 -1.2 conserved protein of unknown function compare
PP_5583 -0.7 -1.4 conserved protein of unknown function compare
PP_2568 -0.7 -1.3 Ring-cleaving dioxygenase compare
PP_0880 -0.7 -3.1 dipeptide ABC transporter - putative membrane subunit compare
PP_3930 -0.7 -2.3 conserved exported protein of unknown function compare
PP_4620 -0.7 -4.2 Fumarylacetoacetase compare
PP_5400 -0.7 -4.9 conserved protein of unknown function compare
PP_2285 -0.7 -2.1 conserved exported protein of unknown function compare
PP_5093 -0.7 -1.1 twitching motility protein compare
PP_2878 -0.7 -1.2 conserved protein of unknown function compare
PP_1206 -0.7 -3.8 basic-amino-acid specific porin OprD compare
PP_4268 -0.7 -1.0 nucleoid-associated broad specificity regulator compare
PP_1938 -0.7 -1.9 conserved protein of unknown function compare
PP_2326 -0.7 -4.7 Universal stress protein compare
PP_5146 -0.7 -3.9 RNA pyrophosphohydrolase compare
PP_1054 -0.7 -1.7 Type II secretion pathway protein XcpZ compare
PP_1055 -0.7 -1.3 Type II secretion pathway protein GspN compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms