Experiment set17IT032 for Pseudomonas putida KT2440

Compare to:

M9 minimal media_noCarbon with D-Glucose 10 mM; 15C

200 most detrimental genes:

  gene name fitness t score description  
PP_4099 +2.3 17.7 two-componenent system BarA/UvrY - regulatory subunit compare
PP_1650 +2.3 21.6 Sensor protein GacS compare
PP_4171 +1.2 9.8 conserved exported protein of unknown function compare
PP_2889 +1.0 5.3 putative Transmembrane regulator PrtR compare
PP_4943 +1.0 2.4 putative Glycosyl transferase compare
PP_3821 +0.9 6.8 UTP-glucose-1-phosphate uridylyltransferase compare
PP_3926 +0.9 2.3 short-chain dehydrogenase compare
PP_1142 +0.9 1.8 conserved protein of unknown function compare
PP_4199 +0.8 2.0 putative Lipoprotein compare
PP_4373 +0.8 7.6 Transcriptional regulator FleQ compare
PP_0566 +0.8 1.7 translation-related factor compare
PP_0185 +0.8 5.8 Positive alginate biosynthesis regulatory protein compare
PP_1410 +0.8 2.2 conserved protein of unknown function compare
PP_2387 +0.8 2.9 conserved protein of unknown function compare
PP_3447 +0.8 2.0 conserved membrane protein of unknown function compare
PP_2631 +0.8 2.2 putative cellulose biosynthesis, BcsF/YhjT compare
PP_0022 +0.7 1.7 hypothetical protein compare
PP_0276 +0.7 1.8 Transcriptional regulator, Cro/CI family compare
PP_5580 +0.7 2.9 protein of unknown function compare
PP_2203 +0.7 1.3 conserved protein of unknown function compare
PP_4342 +0.7 3.0 flagellar synthesis regulator, putative ATPase compare
PP_4940 +0.7 5.1 Putative glycosyltransferase compare
PP_4593 +0.6 2.5 conserved protein of unknown function compare
PP_0168 +0.6 6.0 putative surface adhesion protein compare
PP_4172 +0.6 4.0 conserved exported protein of unknown function compare
PP_4424 +0.6 1.7 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_2214 +0.6 2.7 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_0166 +0.6 5.4 HlyD family secretion protein compare
PP_4363 +0.6 5.2 Sensor histidine kinase/response regulator compare
PP_0846 +0.6 1.0 DnaK-like molecular chaperone specific for IscU compare
PP_0262 +0.6 3.3 conserved protein of unknown function compare
PP_3052 +0.6 1.4 conserved protein of unknown function compare
PP_4710 +0.6 4.3 tRNA pseudouridine 55 synthase compare
PP_3055 +0.6 3.3 Pyocin R2_PP, tail formation protein compare
PP_0167 +0.6 5.2 Toxin secretion ATP-binding protein compare
PP_0165 +0.6 5.0 GGDEF domain protein compare
PP_3002 +0.6 2.8 shikimate dehydrogenase-related enzyme compare
PP_3866 +0.6 2.0 conserved protein of unknown function compare
PP_4571 +0.5 3.2 cysteine synthase A compare
PP_5053 +0.5 3.9 Protein-export protein SecB compare
PP_3365 +0.5 1.3 Acetolactate synthase compare
PP_1176 +0.5 1.2 conserved protein of unknown function compare
PP_3761 +0.5 4.7 Sensor histidine kinase/response regulator compare
PP_1719 +0.5 4.0 Tail-specific protease prc compare
PP_3037 +0.5 1.0 C4-type zinc finger protein, DksA/TraR family compare
PP_2429 +0.5 1.4 putative Membrane protein compare
PP_4959 +0.5 4.4 diguanylate cyclase compare
PP_2970 +0.5 2.6 conserved exported protein of unknown function compare
PP_4050 +0.5 4.5 glycogen synthase compare
PP_4173 +0.5 4.1 Sensor histidine kinase/response regulator compare
PP_1568 +0.5 1.3 conserved protein of unknown function compare
PP_4519 +0.5 4.3 Agglutination protein compare
PP_0674 +0.5 4.0 ADP/ATP ratio sensor and inhibitor of translation compare
PP_4706 +0.5 2.5 conserved protein of unknown function compare
PP_4936 +0.5 3.1 O-antigen polymerase compare
PP_1508 +0.5 2.0 conserved protein of unknown function compare
PP_1021 +0.5 3.1 DNA-binding transcriptional regulator compare
PP_1544 +0.5 1.3 conserved protein of unknown function compare
PP_2633 +0.4 1.5 conserved protein of unknown function compare
PP_2458 +0.4 3.1 ribokinase compare
PP_2681 +0.4 1.5 coenzyme PQQ synthesis protein D compare
PP_4329 +0.4 1.7 FlhB domain protein compare
PP_2497 +0.4 1.0 conserved protein of unknown function compare
PP_2547 +0.4 2.2 Transcriptional regulator, LysR family compare
PP_1397 +0.4 1.8 conserved protein of unknown function compare
PP_3473 +0.4 1.5 curli secretion and assembly outer membrane associated component compare
PP_3760 +0.4 2.7 putative methyltransferase compare
PP_0319 +0.4 1.6 conserved protein of unknown function compare
PP_4162 +0.4 1.9 conserved membrane protein of unknown function compare
PP_5476 +0.4 3.0 conserved protein of unknown function compare
PP_0313 +0.4 1.2 putative electron transfer flavoprotein beta subunit compare
PP_2668 +0.4 1.6 ABC efflux transporter, ATP-binding protein compare
PP_5639 +0.4 2.8 conserved exported protein of unknown function compare
PP_1824 +0.4 1.5 Smr domain protein compare
PP_2309 +0.4 1.0 conserved protein of unknown function compare
PP_5469 +0.4 2.4 putative SAM-dependent methyltransferase compare
PP_1113 +0.4 3.2 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1008 +0.4 1.6 RNA polymerase subunit sigma-24 compare
PP_2455 +0.4 1.9 ribose ABC transporter - ATP-binding subunit compare
PP_4054 +0.4 1.7 conserved protein of unknown function compare
PP_5225 +0.4 1.1 frataxin compare
PP_t13 +0.4 1.6 tRNA-Lys compare
PP_4629 +0.4 1.7 Sensory box protein compare
PP_4938 +0.4 2.9 putative Glycosyl transferase compare
PP_3017 +0.4 1.4 O6-methylguanine-DNA methyltransferase compare
PP_2740 +0.4 1.4 Transcriptional regulator, MerR family compare
PP_0959 +0.4 0.9 phospholipid ABC transporter compare
PP_0556 +0.4 1.7 Acetoin catabolism protein compare
PP_1097 +0.4 0.5 Methionine--tRNA ligase compare
PP_3307 +0.4 0.8 conserved protein of unknown function compare
PP_0025 +0.4 1.0 hypothetical protein compare
PP_t11 +0.4 1.2 tRNA-Lys compare
PP_3831 +0.4 2.2 conserved protein of unknown function compare
PP_4787 +0.4 1.3 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1552 +0.4 1.7 putative Phage replication protein compare
PP_3871 +0.4 2.0 conserved protein of unknown function compare
PP_5320 +0.4 2.7 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_3415 +0.3 2.4 Transcriptional regulator, LacI family compare
PP_5508 +0.3 0.8 conserved protein of unknown function compare
PP_4628 +0.3 1.9 conserved protein of unknown function compare
PP_5017 +0.3 0.8 Sec-independent protein translocase protein TatB compare
PP_3773 +0.3 1.3 conserved protein of unknown function compare
PP_5359 +0.3 1.7 CobW/P47K family protein compare
PP_4100 +0.3 2.1 Transcriptional regulator, Cro/CI family compare
PP_1656 +0.3 2.6 ATP:GTP 3'-pyrophosphotransferase compare
PP_5223 +0.3 1.8 regulator of nucleotide diphosphokinase compare
PP_3089 +0.3 2.1 conserved protein of unknown function compare
PP_1979 +0.3 1.6 putative Hydrolase compare
PP_2357 +0.3 2.1 putative Type 1 pili protein CsuB compare
PP_0642 +0.3 1.5 conserved membrane protein of unknown function compare
PP_4837 +0.3 1.8 conserved protein of unknown function compare
PP_2070 +0.3 1.0 Transcriptional regulator, AraC family compare
PP_0773 +0.3 2.3 OmpA/MotB domain-containing protein compare
PP_5621 +0.3 0.9 protein of unknown function compare
PP_t49 +0.3 1.5 tRNA-Met compare
PP_3654 +0.3 1.4 leucine-responsive regulatory protein compare
PP_5712 +0.3 2.0 conserved protein of unknown function compare
PP_1548 +0.3 1.5 conserved protein of unknown function compare
PP_1269 +0.3 0.7 Universal stress protein family compare
PP_2229 +0.3 1.3 putative K(+)/H(+) antiporter subunit C compare
PP_5492 +0.3 2.0 conserved protein of unknown function compare
PP_3116 +0.3 1.5 transcriptional repressor compare
PP_0755 +0.3 2.2 conserved protein of unknown function compare
PP_1581 +0.3 2.7 BNR domain protein compare
PP_2472 +0.3 2.0 putative transcriptional regulator, MerR family compare
PP_2675 +0.3 1.6 Cytochrome c-type protein compare
PP_5331 +0.3 1.4 Long-chain acyl-CoA thioester hydrolase compare
PP_4504 +0.3 1.0 conserved exported protein of unknown function compare
PP_0775 +0.3 0.7 conserved protein of unknown function compare
PP_5480 +0.3 1.3 conserved exported protein of unknown function compare
PP_4820 +0.3 2.3 tRNA-dihydrouridine synthase B compare
PP_1727 +0.3 2.2 Transcriptional regulator, GntR family compare
PP_4390 +0.3 2.4 flagellar basal-body rod protein FlgC compare
PP_4528 +0.3 0.9 conserved protein of unknown function compare
PP_5070 +0.3 2.2 ParA family protein compare
PP_3855 +0.3 1.5 conserved protein of unknown function compare
PP_0805 +0.3 2.6 Outer membrane efflux protein compare
PP_5644 +0.3 1.2 conserved membrane protein of unknown function compare
PP_0979 +0.3 1.1 DNA polymerase III subunit chi compare
PP_1655 +0.3 2.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4444 +0.3 1.4 transposase compare
PP_0893 +0.3 1.2 ThiJ/PfpI family protein compare
PP_5278 +0.3 1.8 4-guanidinobutyraldehyde dehydrogenase compare
PP_1404 +0.3 0.7 conserved protein of unknown function compare
PP_4349 +0.3 1.6 conserved protein of unknown function compare
PP_0007 +0.3 1.4 conserved hypothetical protein compare
PP_5066 +0.3 1.6 K(+)/H(+) antiporter NhaP2 compare
PP_4506 +0.3 2.1 Nitroreductase family protein compare
PP_0312 +0.3 1.6 electron transfer flavoprotein, alpha subunit compare
PP_2677 +0.3 1.0 conserved exported protein of unknown function compare
PP_1131 +0.3 1.5 outer membrane lipoprotein compare
PP_3409 +0.3 1.0 putative Cobalamin biosynthesis protein cobE compare
PP_4953 +0.3 1.8 putative oxidoreductase with FAD/NAD(P)-binding domain compare
PP_0676 +0.3 1.4 putative Transcription elongation factor compare
PP_3637 +0.3 0.7 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_0572 +0.3 2.4 peptidoglycan glycosyltransferase compare
PP_0509 +0.3 1.5 conserved protein of unknown function compare
PP_2680 +0.3 1.9 aldehyde dehydrogenase compare
PP_0699 +0.3 2.1 Transporter, LysE family compare
PP_0508 +0.3 0.8 conserved exported protein of unknown function compare
PP_1554 +0.3 1.0 conserved protein of unknown function compare
PP_1713 +0.3 0.9 Transcriptional regulator PcaQ compare
PP_2306 +0.3 0.6 conserved exported protein of unknown function compare
PP_0896 +0.3 1.4 Carbon-nitrogen hydrolase family protein compare
PP_5110 +0.3 1.2 cytokinetic ring ABC transporter-like subunit - ATP-binding subunit compare
PP_3798 +0.3 1.9 conserved protein of unknown function compare
PP_3762 +0.3 1.2 Response regulator compare
PP_4052 +0.3 2.2 4-alpha-glucanotransferase compare
PP_4361 +0.3 1.7 Flagellar hook-length control protein FliK compare
PP_4109 +0.3 0.9 conserved protein of unknown function compare
PP_4786 +0.3 1.2 conserved protein of unknown function compare
PP_1062 +0.3 1.0 MutT/nudix family protein compare
PP_2776 +0.3 1.5 Homocysteine S-methyltransferase family protein compare
PP_1109 +0.3 2.5 Transcriptional regulator, GntR family compare
PP_4701 +0.3 0.5 glucose-6-phosphate isomerase compare
PP_0624 +0.3 1.9 Uncharacterized protein YfiH compare
PP_1004 +0.3 0.8 conserved protein of unknown function compare
PP_2413 +0.3 2.3 GGDEF family protein compare
PP_0385 +0.3 1.5 putative serine acetyltransferase compare
PP_0035 +0.3 1.2 putative bactoprenol-linked glycose transferase compare
PP_5179 +0.3 1.9 spermidine/putrescine ABC transporter - ATP binding subunit compare
PP_3036 +0.3 0.9 conserved protein of unknown function compare
PP_5045 +0.3 1.1 tRNA sulfurtransferase compare
PP_0177 +0.3 1.5 conserved protein of unknown function compare
PP_2073 +0.3 0.8 Acetyltransferase, GNAT family compare
PP_2409 +0.3 1.1 cobalt-zinc-cadmium resistance protein compare
PP_2083 +0.3 1.6 putative Lipase compare
PP_2836 +0.3 1.4 putative 2-keto-3-deoxyxylonate dehydratase compare
PP_4337 +0.3 1.5 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_2330 +0.3 1.1 conserved protein of unknown function compare
PP_4313 +0.3 1.7 putative peptidylprolyl isomerase compare
PP_5175 +0.3 1.7 HlyD family secretion protein compare
PP_5240 +0.3 0.9 Response regulator compare
PP_1855 +0.3 1.3 conserved exported protein of unknown function compare
PP_3625 +0.3 1.6 Transporter, LysE family compare
PP_0874 +0.3 0.9 conserved protein of unknown function compare
PP_3186 +0.3 1.2 putative Transcriptional activator compare
PP_1384 +0.3 2.1 Probable efflux pump outer membrane protein TtgC compare
PP_2596 +0.3 1.5 putative ABC transporter, permease/ATP-binding protein compare
PP_1812 +0.3 0.8 conserved protein of unknown function compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms