Experiment set17IT031 for Pseudomonas putida KT2440

Compare to:

M9 minimal media_noCarbon with D-Glucose 10 mM; 15C

200 most important genes:

  gene name fitness t score description  
PP_0293 -5.6 -4.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0082 -5.2 -10.2 tryptophan synthase alpha chain compare
PP_1988 -5.1 -10.3 3-isopropylmalate dehydrogenase compare
PP_0290 -4.9 -10.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1986 -4.8 -5.6 3-isopropylmalate dehydratase small subunit compare
PP_0083 -4.5 -11.5 tryptophan synthase beta chain compare
PP_4058 -4.3 -16.5 1,4-alpha-glucan branching enzyme compare
PP_2371 -4.3 -9.1 Sulphite reductase hemoprotein, beta subunit compare
PP_5095 -4.3 -2.9 pyrroline-5-carboxylate reductase compare
PP_1778 -4.2 -11.3 Lipopolysaccharide ABC export system, permease protein compare
PP_1985 -4.2 -5.1 3-isopropylmalate dehydratase large subunit compare
PP_4890 -4.1 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_0184 -4.0 -10.7 Argininosuccinate lyase compare
PP_2168 -3.9 -11.8 Transaldolase compare
PP_3511 -3.9 -12.0 Branched-chain-amino-acid aminotransferase compare
PP_0967 -3.9 -13.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4909 -3.9 -11.6 phosphoserine phosphatase compare
PP_1995 -3.7 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5098 -3.7 -10.3 methionine biosynthesis protein MetW compare
PP_4678 -3.7 -16.5 Ketol-acid reductoisomerase compare
PP_4680 -3.7 -16.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4696 -3.6 -6.8 Nitrogen regulation protein NR(I) compare
PP_5097 -3.6 -16.3 homoserine O-acetyltransferase compare
PP_4679 -3.5 -9.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0292 -3.4 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0289 -3.4 -8.3 Imidazoleglycerol-phosphate dehydratase compare
PP_0966 -3.4 -10.8 Histidinol dehydrogenase compare
PP_5014 -3.4 -5.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_5015 -3.3 -7.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0965 -3.2 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1779 -3.2 -9.9 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_0421 -3.2 -7.9 Anthranilate phosphoribosyltransferase compare
PP_0417 -3.1 -18.0 Anthranilate synthase component 1 compare
PP_5347 -3.0 -14.5 pyruvate carboxylase subunit A compare
PP_5185 -3.0 -9.6 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5128 -3.0 -9.2 Dihydroxy-acid dehydratase compare
PP_1088 -3.0 -13.5 Argininosuccinate synthase compare
PP_0422 -2.9 -5.8 Indole-3-glycerol phosphate synthase compare
PP_3376 -2.9 -7.2 putative phosphonate dehydrogenase compare
PP_5289 -2.9 -6.1 Acetylglutamate kinase compare
PP_2001 -2.8 -8.9 O-succinylhomoserine sulfhydrylase compare
PP_0420 -2.8 -14.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5346 -2.8 -9.1 pyruvate carboxylase subunit B compare
PP_3999 -2.8 -10.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5155 -2.6 -3.9 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2388 -2.5 -3.0 Transporter, LysE family compare
PP_1022 -2.5 -8.1 glucose 6-phosphate-1-dehydrogenase compare
PP_5348 -2.5 -12.2 Transcriptional regulator, LysR family compare
PP_2370 -2.5 -3.8 conserved protein of unknown function compare
PP_5145 -2.4 -17.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0948 -2.3 -3.2 Phosphocarrier protein HPr compare
PP_2327 -2.3 -4.6 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4724 -2.2 -1.5 Carbamoyl-phosphate synthase small chain compare
PP_4700 -2.2 -4.6 pantothenate synthetase compare
PP_1912 -2.2 -6.6 Phosphate acyltransferase compare
PP_1664 -2.1 -4.9 phosphoribosylglycinamide formyltransferase 1 compare
PP_0691 -2.1 -1.4 Glutamate 5-kinase compare
PP_0339 -2.1 -2.8 Pyruvate dehydrogenase E1 component compare
PP_1079 -2.0 -7.7 Ornithine carbamoyltransferase compare
PP_5303 -2.0 -6.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4902 -2.0 -3.2 Oligoribonuclease compare
PP_1198 -1.9 -3.4 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2402 -1.9 -3.6 putative Sensor histidine kinase compare
PP_0914 -1.8 -11.8 GGDEF domain protein compare
PP_2328 -1.8 -4.6 Phosphoadenosine phosphosulfate reductase compare
PP_4723 -1.8 -1.2 Carbamoyl-phosphate synthase large chain compare
PP_1215 -1.8 -2.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_2390 -1.8 -5.3 Transcriptional regulator, LysR family compare
PP_0393 -1.8 -3.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4008 -1.8 -7.2 ATP-dependent serine protease compare
PP_1025 -1.7 -6.0 2-isopropylmalate synthase compare
PP_4265 -1.7 -1.1 DNA-binding transcriptional dual regulator compare
PP_1654 -1.6 -2.8 cysteine synthase B compare
PP_4726 -1.6 -3.4 Chaperone protein DnaJ compare
PP_0758 -1.6 -6.4 conserved protein of unknown function compare
PP_5216 -1.6 -2.8 exopolyphosphatase compare
PP_0164 -1.6 -7.5 conserved protein of unknown function compare
PP_0362 -1.5 -10.6 Biotin synthase compare
PP_1362 -1.5 -5.6 pyruvate kinase II compare
PP_1012 -1.5 -6.4 DNA-binding response regulator compare
PP_4695 -1.4 -9.4 Sensory box histidine kinase compare
PP_0291 -1.4 -1.7 conserved protein of unknown function compare
PP_0366 -1.4 -6.7 dethiobiotin synthetase compare
PP_2433 -1.4 -2.3 conserved protein of unknown function compare
PP_4060 -1.4 -10.0 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1493 -1.4 -3.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1018 -1.4 -6.9 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_1015 -1.4 -8.1 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_1231 -1.4 -5.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1016 -1.4 -8.4 mannose/glucose ABC transporter, permease protein conserved
PP_1017 -1.3 -6.1 mannose/glucose ABC transporter, permease protein conserved
PP_4642 -1.3 -2.1 Cyclic diguanosine monophosphate-binding protein compare
PP_4699 -1.3 -4.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1013 -1.2 -6.9 Sensor histidine kinase compare
PP_4880 -1.2 -7.9 exoribonuclease R compare
PP_4984 -1.2 -8.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0719 -1.2 -1.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1304 -1.2 -8.4 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4860 -1.2 -8.8 putative Mannose-6-phosphate isomerase compare
PP_0127 -1.2 -5.1 Thiol:disulfide interchange protein compare
PP_0364 -1.2 -5.9 pimeloyl-[acp] methyl ester esterase compare
PP_3417 -1.1 -5.9 D-gluconate transporter compare
PP_5035 -1.1 -7.3 Histidine utilization repressor compare
PP_4766 -1.1 -7.2 ATP-dependent RNA helicase compare
PP_4560 -1.1 -3.1 putative Ribonuclease BN compare
PP_0363 -1.1 -8.6 8-amino-7-oxononanoate synthase compare
PP_0365 -1.1 -6.7 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0910 -1.1 -5.5 conserved exported protein of unknown function compare
PP_0377 -1.0 -2.8 coenzyme PQQ synthesis protein D compare
PP_0787 -1.0 -3.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1623 -1.0 -8.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_4961 -1.0 -2.5 putative Lipoprotein compare
PP_4471 -1.0 -3.7 Magnesium transporter compare
PP_1034 -1.0 -7.5 multicopper oxidase compare
PP_4009 -1.0 -4.2 ATP-dependent Clp protease adapter protein ClpS compare
PP_4895 -1.0 -2.7 tRNA dimethylallyltransferase compare
PP_1589 -1.0 -6.8 uridylyltransferase compare
PP_1303 -1.0 -5.3 Sulfate adenylyltransferase subunit 2 compare
PP_0872 -1.0 -4.7 Peptide chain release factor 3 compare
PP_0913 -1.0 -4.7 conserved exported protein of unknown function compare
PP_4355 -1.0 -2.5 flagellar export apparatus subunit compare
PP_0949 -0.9 -4.3 putative ATP-binding protein UPF0042 compare
PP_4120 -0.9 -2.8 NADH-quinone oxidoreductase subunit B compare
PP_0593 -0.9 -1.4 putative ribosome-binding factor compare
PP_1824 -0.9 -2.2 Smr domain protein compare
PP_4126 -0.9 -1.6 NADH-quinone oxidoreductase subunit I compare
PP_2302 -0.9 -3.8 DNA-binding, ATP-dependent protease compare
PP_2378 -0.9 -2.3 Fe/S biogenesis protein NfuA compare
PP_3649 -0.9 -4.5 Transcriptional regulator, GntR family compare
PP_5028 -0.9 -3.6 proline iminopeptidase compare
PP_4354 -0.9 -3.1 flagellar export apparatus subunit compare
PP_0834 -0.9 -2.6 Sec translocation complex subunit YajC compare
PP_2414 -0.8 -1.4 conserved exported protein of unknown function compare
PP_0379 -0.8 -5.0 Coenzyme PQQ synthesis protein B compare
PP_5217 -0.8 -6.8 Polyphosphate kinase compare
PP_1054 -0.8 -1.9 Type II secretion pathway protein XcpZ compare
PP_1898 -0.8 -1.9 MotA/TolQ/ExbB proton channel family protein compare
PP_1353 -0.8 -2.5 conserved membrane protein of unknown function compare
PP_1428 -0.8 -1.2 Sigma factor AlgU negative regulatory protein compare
PP_1011 -0.8 -5.7 glucokinase compare
PP_0395 -0.8 -6.4 putative type IV piliation protein compare
PP_0396 -0.8 -6.7 conserved protein of unknown function compare
PP_2794 -0.8 -1.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0909 -0.8 -6.0 conserved exported protein of unknown function compare
PP_1366 -0.8 -1.7 Transcriptional regulator MvaT, P16 subunit compare
PP_4944 -0.8 -2.9 Carbamoyltransferase compare
PP_1783 -0.8 -1.7 dTDP-glucose pyrophosphorylase compare
PP_4804 -0.8 -2.2 RlpA-like lipoprotein compare
PP_1734 -0.8 -2.9 Probable septum site-determining protein MinC compare
PP_0397 -0.8 -7.3 protein kinase compare
PP_4379 -0.8 -2.3 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_4006 -0.8 -4.6 Putative arginyl-tRNA--protein transferase compare
PP_0376 -0.8 -5.2 Coenzyme PQQ synthesis protein E compare
PP_3603 -0.8 -4.3 Transcriptional regulator, GntR family compare
PP_2285 -0.8 -2.9 conserved exported protein of unknown function compare
PP_4098 -0.8 -2.5 UvrABC system protein C compare
PP_3551 -0.8 -1.6 DNA-binding response regulator, LuxR family compare
PP_5514 -0.8 -2.1 conserved protein of unknown function compare
PP_1994 -0.8 -1.9 tRNA pseudouridine (38-40)synthase compare
PP_1009 -0.8 -2.4 glyceraldehyde-3-phosphate dehydrogenase compare
PP_4223 -0.7 -2.4 diaminobutyrate-2-oxoglutarate transaminase compare
PP_4693 -0.7 -2.9 RNA polymerase-binding transcription factor DksA compare
PP_1764 -0.7 -2.5 Phosphoglycolate phosphatase 2 compare
PP_1364 -0.7 -5.7 conserved exported protein of unknown function compare
PP_4364 -0.7 -2.3 putative Anti-sigma F factor antagonist compare
PP_4980 -0.7 -4.5 ATP-dependent RNA helicase compare
PP_5146 -0.7 -4.1 RNA pyrophosphohydrolase compare
PP_5075 -0.7 -5.6 glutamate synthase (NADPH) beta subunit compare
PP_4941 -0.7 -3.7 conserved exported protein of unknown function compare
PP_1789 -0.7 -3.4 Hydrolase, haloacid dehalogenase-like family compare
PP_1444 -0.7 -5.4 quinoprotein glucose dehydrogenase compare
PP_0084 -0.7 -4.2 HTH-type transcriptional regulator TrpI compare
PP_1553 -0.7 -1.2 conserved protein of unknown function compare
PP_5114 -0.7 -2.3 putative adenine methyltransferase compare
PP_4204 -0.7 -2.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2475 -0.7 -3.1 Transcriptional regulator, TetR family compare
PP_3902 -0.7 -2.6 conserved protein of unknown function compare
PP_0888 -0.7 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_2820 -0.7 -2.5 HTH-type transcriptional regulator nfxB compare
PP_0512 -0.7 -2.7 hypothetical protein compare
PP_5548 -0.7 -2.8 protein of unknown function compare
PP_0908 -0.7 -2.8 conserved exported protein of unknown function compare
PP_2286 -0.7 -3.6 conserved protein of unknown function compare
PP_4251 -0.7 -2.6 cytochrome c oxidase subunit, cbb3-type compare
PP_5000 -0.6 -1.8 peptidase component of the ATP-dependent HslVU protease compare
PP_0378 -0.6 -3.9 Pyrroloquinoline-quinone synthase compare
PP_0380 -0.6 -3.1 Coenzyme PQQ synthesis protein A compare
PP_3392 -0.6 -1.8 conserved protein of unknown function compare
PP_0001 -0.6 -1.1 probable chromosome-partitioning protein compare
PP_1206 -0.6 -4.3 basic-amino-acid specific porin OprD compare
PP_0401 -0.6 -1.8 Ribosomal RNA small subunit methyltransferase A compare
PP_5093 -0.6 -1.6 twitching motility protein compare
PP_1968 -0.6 -3.4 TetR family transcriptional regulator compare
PP_4835 -0.6 -1.4 conserved exported protein of unknown function compare
PP_5054 -0.6 -1.5 glutaredoxin 3 compare
PP_1777 -0.6 -3.9 phosphomannomutase compare
PP_3938 -0.6 -2.1 conserved protein of unknown function compare
PP_3239 -0.6 -1.9 putative cointegrate resolution protein T Tn4652 compare
PP_4561 -0.6 -0.9 stress response protein compare
PP_2189 -0.6 -2.0 conserved protein of unknown function compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms