Experiment set17IT030 for Pseudomonas putida KT2440

Compare to:

M9 minimal media_noCarbon with D-Glucose 10 mM; 30C

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.4 -5.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_3511 -5.6 -11.3 Branched-chain-amino-acid aminotransferase compare
PP_4058 -5.3 -13.3 1,4-alpha-glucan branching enzyme compare
PP_0082 -5.2 -8.7 tryptophan synthase alpha chain compare
PP_0083 -5.1 -8.5 tryptophan synthase beta chain compare
PP_0290 -5.0 -11.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2168 -4.9 -14.2 Transaldolase compare
PP_4890 -4.9 -6.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_5185 -4.9 -9.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0184 -4.8 -10.3 Argininosuccinate lyase compare
PP_1986 -4.6 -5.4 3-isopropylmalate dehydratase small subunit compare
PP_1985 -4.5 -6.0 3-isopropylmalate dehydratase large subunit compare
PP_0967 -4.4 -11.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1088 -4.4 -14.4 Argininosuccinate synthase compare
PP_1988 -4.3 -12.0 3-isopropylmalate dehydrogenase compare
PP_4680 -4.3 -16.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -4.3 -20.4 Anthranilate synthase component 1 compare
PP_4678 -4.2 -16.6 Ketol-acid reductoisomerase compare
PP_0289 -4.1 -7.2 Imidazoleglycerol-phosphate dehydratase compare
PP_5155 -3.9 -7.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4909 -3.9 -10.3 phosphoserine phosphatase compare
PP_0966 -3.9 -14.2 Histidinol dehydrogenase compare
PP_4679 -3.8 -8.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1995 -3.8 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5015 -3.7 -6.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5289 -3.6 -6.0 Acetylglutamate kinase compare
PP_0965 -3.5 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0422 -3.5 -7.5 Indole-3-glycerol phosphate synthase compare
PP_1079 -3.3 -7.7 Ornithine carbamoyltransferase compare
PP_0421 -3.3 -9.5 Anthranilate phosphoribosyltransferase compare
PP_5128 -3.2 -7.0 Dihydroxy-acid dehydratase compare
PP_5014 -3.2 -4.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_0420 -3.0 -10.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5097 -2.8 -15.8 homoserine O-acetyltransferase compare
PP_0292 -2.8 -2.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0787 -2.7 -7.5 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3999 -2.5 -9.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2001 -2.4 -10.7 O-succinylhomoserine sulfhydrylase compare
PP_2327 -2.4 -6.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1022 -2.3 -6.8 glucose 6-phosphate-1-dehydrogenase compare
PP_5098 -2.3 -7.2 methionine biosynthesis protein MetW compare
PP_1231 -2.1 -8.3 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_4696 -2.1 -6.2 Nitrogen regulation protein NR(I) compare
PP_4902 -2.0 -3.2 Oligoribonuclease compare
PP_5347 -2.0 -9.5 pyruvate carboxylase subunit A compare
PP_5348 -2.0 -8.4 Transcriptional regulator, LysR family compare
PP_0393 -1.9 -3.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0291 -1.9 -1.9 conserved protein of unknown function compare
PP_4262 -1.9 -3.9 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2371 -1.8 -5.9 Sulphite reductase hemoprotein, beta subunit compare
PP_1654 -1.8 -2.7 cysteine synthase B compare
PP_1025 -1.8 -7.2 2-isopropylmalate synthase compare
PP_5346 -1.7 -6.3 pyruvate carboxylase subunit B compare
PP_2328 -1.7 -5.7 Phosphoadenosine phosphosulfate reductase compare
PP_3417 -1.7 -4.9 D-gluconate transporter compare
PP_4724 -1.7 -1.1 Carbamoyl-phosphate synthase small chain compare
PP_4700 -1.7 -3.3 pantothenate synthetase compare
PP_5095 -1.6 -1.8 pyrroline-5-carboxylate reductase compare
PP_2302 -1.5 -6.1 DNA-binding, ATP-dependent protease compare
PP_2433 -1.5 -2.3 conserved protein of unknown function compare
PP_0339 -1.5 -2.2 Pyruvate dehydrogenase E1 component compare
PP_4060 -1.4 -10.7 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_1778 -1.4 -6.6 Lipopolysaccharide ABC export system, permease protein compare
PP_1912 -1.4 -5.8 Phosphate acyltransferase compare
PP_0833 -1.4 -2.1 queuine tRNA-ribosyltransferase compare
PP_0846 -1.4 -1.2 DnaK-like molecular chaperone specific for IscU compare
PP_0065 -1.4 -4.5 NAD-binding component of TrK potassium transporter compare
PP_2370 -1.3 -1.6 conserved protein of unknown function compare
PP_5303 -1.3 -5.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0261 -1.3 -5.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_4008 -1.3 -5.9 ATP-dependent serine protease compare
PP_0366 -1.3 -6.2 dethiobiotin synthetase compare
PP_4984 -1.2 -8.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_0362 -1.2 -8.5 Biotin synthase compare
PP_4723 -1.2 -0.8 Carbamoyl-phosphate synthase large chain compare
PP_5328 -1.2 -2.6 putative phosphate transport system permease protein compare
PP_2348 -1.1 -4.7 Sensor histidine kinase compare
PP_0691 -1.1 -1.0 Glutamate 5-kinase compare
PP_4004 -1.1 -2.9 DNA translocase FtsK compare
PP_0363 -1.1 -7.5 8-amino-7-oxononanoate synthase compare
PP_1362 -1.0 -4.3 pyruvate kinase II compare
PP_4952 -1.0 -2.0 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_1304 -1.0 -6.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1664 -1.0 -2.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_0380 -1.0 -4.7 Coenzyme PQQ synthesis protein A compare
PP_0735 -1.0 -1.6 molybdopterin-synthase adenylyltransferase compare
PP_0164 -1.0 -5.8 conserved protein of unknown function compare
PP_4782 -1.0 -3.5 Phosphomethylpyrimidine kinase compare
PP_1733 -1.0 -3.1 membrane ATPase of the MinC-MinD-MinE system compare
PP_5583 -1.0 -1.7 conserved protein of unknown function compare
PP_0379 -1.0 -6.2 Coenzyme PQQ synthesis protein B compare
PP_0364 -1.0 -5.7 pimeloyl-[acp] methyl ester esterase compare
PP_0001 -0.9 -1.9 probable chromosome-partitioning protein compare
PP_0949 -0.9 -4.2 putative ATP-binding protein UPF0042 compare
PP_1013 -0.9 -5.5 Sensor histidine kinase compare
PP_5028 -0.9 -3.4 proline iminopeptidase compare
PP_4804 -0.9 -2.0 RlpA-like lipoprotein compare
PP_2345 -0.9 -1.8 conserved exported protein of unknown function compare
PP_0365 -0.9 -6.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1012 -0.9 -3.7 DNA-binding response regulator compare
PP_1779 -0.8 -4.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3790 -0.8 -5.9 diaminopimelate epimerase compare
PP_1366 -0.8 -1.7 Transcriptional regulator MvaT, P16 subunit compare
PP_1017 -0.8 -4.8 mannose/glucose ABC transporter, permease protein conserved
PP_1468 -0.8 -1.8 Tyrosine recombinase XerD compare
PP_4066 -0.8 -2.8 methylglutaconyl-CoA hydratase compare
PP_2378 -0.8 -1.8 Fe/S biogenesis protein NfuA compare
PP_1216 -0.8 -1.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0376 -0.8 -5.2 Coenzyme PQQ synthesis protein E compare
PP_4247 -0.8 -2.0 Exonuclease compare
PP_1215 -0.8 -1.0 Crossover junction endodeoxyribonuclease RuvC compare
PP_0913 -0.8 -5.1 conserved exported protein of unknown function compare
PP_0683 -0.8 -3.1 conserved protein of unknown function compare
PP_0406 -0.8 -2.0 Nucleotidyltransferase family protein compare
PP_1233 -0.8 -3.7 sulfurtransferase compare
PP_1553 -0.8 -1.2 conserved protein of unknown function compare
PP_3102 -0.8 -2.3 conserved protein of unknown function compare
PP_1011 -0.7 -5.1 glucokinase compare
PP_5035 -0.7 -4.1 Histidine utilization repressor compare
PP_3539 -0.7 -2.8 putative Transcriptional regulator compare
PP_0719 -0.7 -0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1426 -0.7 -5.4 L-aspartate oxidase compare
PP_0910 -0.7 -4.0 conserved exported protein of unknown function compare
PP_0809 -0.7 -4.9 disulfide bond formation protein B compare
PP_5114 -0.7 -2.0 putative adenine methyltransferase compare
PP_0378 -0.7 -4.2 Pyrroloquinoline-quinone synthase compare
PP_1015 -0.7 -4.8 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_1444 -0.7 -5.5 quinoprotein glucose dehydrogenase compare
PP_4507 -0.7 -4.6 potassium transporter compare
PP_2000 -0.7 -0.8 amidophosphoribosyl transferase compare
PP_1016 -0.7 -4.1 mannose/glucose ABC transporter, permease protein conserved
PP_0395 -0.6 -5.0 putative type IV piliation protein compare
PP_1568 -0.6 -1.3 conserved protein of unknown function compare
PP_5327 -0.6 -2.3 putative phosphate ABC transporter, permease subunit compare
PP_5104 -0.6 -4.0 thiazole synthase compare
PP_0127 -0.6 -2.9 Thiol:disulfide interchange protein compare
PP_1493 -0.6 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1303 -0.6 -3.9 Sulfate adenylyltransferase subunit 2 compare
PP_4102 -0.6 -3.0 conserved protein of unknown function compare
PP_0381 -0.6 -4.2 Coenzyme PQQ synthesis protein F compare
PP_0673 -0.6 -1.9 conserved protein of unknown function compare
PP_0396 -0.6 -4.8 conserved protein of unknown function compare
PP_5582 -0.6 -1.4 conserved protein of unknown function compare
PP_1018 -0.6 -4.0 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_2939 -0.6 -3.0 toxin of the YefM-YoeB antitoxin/toxin complex and DNA-binding transcriptional repressor compare
PP_2152 -0.6 -2.3 glycerophosphoryl diester phosphodiesterase compare
PP_5216 -0.6 -1.4 exopolyphosphatase compare
PP_2337 -0.6 -1.7 aconitate isomerase compare
PP_4695 -0.6 -4.4 Sensory box histidine kinase compare
PP_0852 -0.6 -2.7 Transcriptional regulator, Cro/CI family compare
PP_5393 -0.6 -1.2 putative metal-binding chaperone compare
PP_2340 -0.6 -2.6 conserved protein of unknown function compare
PP_3789 -0.6 -4.0 putative Efflux transporter compare
PP_4546 -0.6 -2.2 ATP-dependent helicase HrpA compare
PP_2326 -0.6 -4.1 Universal stress protein compare
PP_0260 -0.6 -2.7 ADP-sugar pyrophosphorylase compare
PP_5329 -0.6 -1.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0908 -0.5 -3.5 conserved exported protein of unknown function compare
PP_2088 -0.5 -1.4 RNA polymerase sigma factor SigX compare
PP_1293 -0.5 -1.6 molybdopterin synthase small subunit compare
PP_1034 -0.5 -4.3 multicopper oxidase compare
PP_2336 -0.5 -1.8 aconitate hydratase 1 compare
PP_4253 -0.5 -1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_5507 -0.5 -2.0 protein of unknown function compare
PP_4480 -0.5 -3.5 arginine N-succinyltransferase, subunit alpha compare
PP_5500 -0.5 -2.1 protein of unknown function compare
PP_5161 -0.5 -2.2 putative lysophospholipase compare
PP_4870 -0.5 -2.4 Azurin compare
PP_0397 -0.5 -4.6 protein kinase compare
PP_1322 -0.5 -1.4 putative Lipoprotein compare
PP_5548 -0.5 -2.3 protein of unknown function compare
PP_2070 -0.5 -1.0 Transcriptional regulator, AraC family compare
PP_1164 -0.5 -1.3 Transcriptional regulator, LysR family compare
PP_1048 -0.5 -1.5 putative protein secretion protein for export compare
PP_4419 -0.5 -1.8 transposase compare
PP_4213 -0.5 -1.7 putative dipeptidase compare
PP_5571 -0.5 -1.2 conserved protein of unknown function compare
PP_0999 -0.5 -1.8 carbamate kinase compare
PP_5453 -0.5 -0.9 conserved protein of unknown function compare
PP_0878 -0.5 -2.7 dipeptide ABC transporter, binding subunit compare
PP_3315 -0.5 -1.4 conserved membrane protein of unknown function compare
PP_0040 -0.5 -2.0 hypothetical protein compare
PP_1808 -0.5 -2.1 glucose-6-phosphate isomerase compare
PP_4471 -0.5 -2.3 Magnesium transporter compare
PP_5652 -0.5 -1.2 conserved protein of unknown function, phage origin compare
PP_0909 -0.5 -3.1 conserved exported protein of unknown function compare
PP_5350 -0.5 -1.8 Transcriptional regulator, RpiR family compare
PP_4693 -0.5 -1.6 RNA polymerase-binding transcription factor DksA compare
PP_2475 -0.5 -2.7 Transcriptional regulator, TetR family compare
PP_1589 -0.5 -3.6 uridylyltransferase compare
PP_3810 -0.5 -1.1 conserved protein of unknown function compare
PP_4874 -0.5 -0.7 50S ribosomal protein L9 compare
PP_3020 -0.5 -1.5 putative Serine/threonine protein phosphatase compare
PP_0856 -0.5 -0.7 conserved lipoprotein of unknown function compare
PP_1512 -0.5 -1.8 conserved protein of unknown function compare
PP_3509 -0.5 -1.5 Glyoxalase family protein compare
PP_2145 -0.5 -1.2 beta-N-acetylglucosaminidase compare
PP_4922 -0.5 -3.4 Phosphomethylpyrimidine synthase compare
PP_1632 -0.5 -1.2 conserved protein of unknown function compare
PP_4338 -0.5 -3.4 Chemotaxis histidine kinase CheA compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms