Experiment set17IT029 for Pseudomonas putida KT2440

Compare to:

M9 minimal media_noCarbon with D-Glucose 10 mM; 30C

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.5 -5.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2168 -5.8 -12.9 Transaldolase compare
PP_4058 -5.6 -11.9 1,4-alpha-glucan branching enzyme compare
PP_0290 -5.1 -11.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0422 -5.0 -9.0 Indole-3-glycerol phosphate synthase compare
PP_0082 -5.0 -9.0 tryptophan synthase alpha chain compare
PP_1985 -5.0 -7.6 3-isopropylmalate dehydratase large subunit compare
PP_0083 -4.9 -9.3 tryptophan synthase beta chain compare
PP_0966 -4.5 -14.1 Histidinol dehydrogenase compare
PP_4678 -4.4 -17.6 Ketol-acid reductoisomerase compare
PP_3511 -4.4 -9.1 Branched-chain-amino-acid aminotransferase compare
PP_4890 -4.2 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_5185 -4.2 -9.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0967 -4.2 -11.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1079 -4.0 -7.5 Ornithine carbamoyltransferase compare
PP_4680 -4.0 -15.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0184 -3.9 -9.2 Argininosuccinate lyase compare
PP_0289 -3.9 -10.6 Imidazoleglycerol-phosphate dehydratase compare
PP_1995 -3.8 -9.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5289 -3.8 -7.7 Acetylglutamate kinase compare
PP_1988 -3.8 -9.8 3-isopropylmalate dehydrogenase compare
PP_5095 -3.7 -2.6 pyrroline-5-carboxylate reductase compare
PP_0421 -3.7 -8.9 Anthranilate phosphoribosyltransferase compare
PP_0417 -3.6 -18.8 Anthranilate synthase component 1 compare
PP_5155 -3.6 -5.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4679 -3.6 -8.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1088 -3.5 -13.3 Argininosuccinate synthase compare
PP_0965 -3.5 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4909 -3.5 -8.1 phosphoserine phosphatase compare
PP_5128 -3.5 -9.1 Dihydroxy-acid dehydratase compare
PP_1986 -3.4 -5.3 3-isopropylmalate dehydratase small subunit compare
PP_5014 -3.3 -5.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_5015 -3.2 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0292 -3.2 -3.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0393 -3.2 -4.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3999 -2.9 -9.8 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2001 -2.7 -12.5 O-succinylhomoserine sulfhydrylase compare
PP_2327 -2.6 -7.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4696 -2.5 -7.5 Nitrogen regulation protein NR(I) compare
PP_1231 -2.5 -6.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5097 -2.3 -13.9 homoserine O-acetyltransferase compare
PP_4700 -2.3 -3.9 pantothenate synthetase compare
PP_0420 -2.3 -7.9 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0787 -2.2 -5.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1022 -2.2 -7.8 glucose 6-phosphate-1-dehydrogenase compare
PP_5098 -2.1 -8.4 methionine biosynthesis protein MetW compare
PP_2371 -2.0 -5.8 Sulphite reductase hemoprotein, beta subunit compare
PP_5347 -1.8 -9.6 pyruvate carboxylase subunit A compare
PP_4724 -1.8 -1.2 Carbamoyl-phosphate synthase small chain compare
PP_0291 -1.7 -2.1 conserved protein of unknown function compare
PP_1025 -1.7 -7.4 2-isopropylmalate synthase compare
PP_0691 -1.7 -1.2 Glutamate 5-kinase compare
PP_5346 -1.7 -8.3 pyruvate carboxylase subunit B compare
PP_4008 -1.6 -8.2 ATP-dependent serine protease compare
PP_5328 -1.5 -3.2 putative phosphate transport system permease protein compare
PP_1912 -1.5 -5.7 Phosphate acyltransferase compare
PP_4060 -1.4 -10.9 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0339 -1.4 -2.5 Pyruvate dehydrogenase E1 component compare
PP_3417 -1.4 -6.1 D-gluconate transporter compare
PP_5303 -1.4 -5.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0833 -1.4 -2.1 queuine tRNA-ribosyltransferase compare
PP_4265 -1.4 -1.0 DNA-binding transcriptional dual regulator compare
PP_0261 -1.4 -6.5 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0949 -1.4 -5.4 putative ATP-binding protein UPF0042 compare
PP_5216 -1.4 -2.8 exopolyphosphatase compare
PP_5348 -1.3 -8.1 Transcriptional regulator, LysR family compare
PP_2370 -1.3 -3.7 conserved protein of unknown function compare
PP_0362 -1.3 -9.1 Biotin synthase compare
PP_2328 -1.3 -4.5 Phosphoadenosine phosphosulfate reductase compare
PP_4723 -1.3 -0.9 Carbamoyl-phosphate synthase large chain compare
PP_0366 -1.2 -7.0 dethiobiotin synthetase compare
PP_2433 -1.2 -2.0 conserved protein of unknown function compare
PP_0164 -1.1 -7.2 conserved protein of unknown function compare
PP_2402 -1.1 -2.5 putative Sensor histidine kinase compare
PP_4984 -1.1 -6.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1778 -1.1 -5.9 Lipopolysaccharide ABC export system, permease protein compare
PP_0363 -1.1 -7.5 8-amino-7-oxononanoate synthase compare
PP_2348 -1.0 -4.2 Sensor histidine kinase compare
PP_1215 -1.0 -2.4 Crossover junction endodeoxyribonuclease RuvC compare
PP_1493 -1.0 -3.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0364 -1.0 -6.2 pimeloyl-[acp] methyl ester esterase compare
PP_0232 -1.0 -1.9 ATP-binding taurine transporter subunit compare
PP_4902 -0.9 -2.5 Oligoribonuclease compare
PP_2302 -0.9 -4.8 DNA-binding, ATP-dependent protease compare
PP_4004 -0.9 -3.6 DNA translocase FtsK compare
PP_0719 -0.9 -1.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1013 -0.9 -4.5 Sensor histidine kinase compare
PP_0377 -0.9 -2.3 coenzyme PQQ synthesis protein D compare
PP_5327 -0.9 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_1654 -0.8 -1.7 cysteine synthase B compare
PP_1664 -0.8 -2.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_3241 -0.8 -1.6 conserved exported protein of unknown function compare
PP_3946 -0.8 -1.4 HTH-type transcriptional repressor NicR compare
PP_0379 -0.8 -5.1 Coenzyme PQQ synthesis protein B compare
PP_4009 -0.8 -2.6 ATP-dependent Clp protease adapter protein ClpS compare
PP_0365 -0.8 -5.5 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_1011 -0.8 -5.9 glucokinase compare
PP_0406 -0.8 -2.4 Nucleotidyltransferase family protein compare
PP_1122 -0.8 -1.9 OmpA family protein compare
PP_4693 -0.8 -2.7 RNA polymerase-binding transcription factor DksA compare
PP_1468 -0.8 -2.2 Tyrosine recombinase XerD compare
PP_0846 -0.8 -0.8 DnaK-like molecular chaperone specific for IscU compare
PP_1824 -0.8 -2.2 Smr domain protein compare
PP_0735 -0.8 -1.7 molybdopterin-synthase adenylyltransferase compare
PP_1362 -0.8 -3.0 pyruvate kinase II compare
PP_4695 -0.7 -5.3 Sensory box histidine kinase compare
PP_0376 -0.7 -5.4 Coenzyme PQQ synthesis protein E compare
PP_1018 -0.7 -4.3 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_1444 -0.7 -6.2 quinoprotein glucose dehydrogenase compare
PP_2581 -0.7 -1.8 conserved protein of unknown function compare
PP_4124 -0.7 -2.8 NADH-quinone oxidoreductase subunit G compare
PP_0260 -0.7 -3.5 ADP-sugar pyrophosphorylase compare
PP_4471 -0.7 -2.9 Magnesium transporter compare
PP_1233 -0.7 -3.3 sulfurtransferase compare
PP_1048 -0.7 -1.9 putative protein secretion protein for export compare
PP_1304 -0.7 -4.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1012 -0.7 -3.9 DNA-binding response regulator compare
PP_1017 -0.7 -4.5 mannose/glucose ABC transporter, permease protein conserved
PP_2403 -0.7 -1.5 Chemotaxis protein CheY compare
PP_5350 -0.7 -2.7 Transcriptional regulator, RpiR family compare
PP_1303 -0.7 -4.1 Sulfate adenylyltransferase subunit 2 compare
PP_4480 -0.7 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_4910 -0.7 -2.4 conserved protein of unknown function compare
PP_1269 -0.7 -1.3 Universal stress protein family compare
PP_1426 -0.7 -5.2 L-aspartate oxidase compare
PP_5483 -0.7 -2.0 conserved protein of unknown function compare
PP_0910 -0.7 -3.4 conserved exported protein of unknown function compare
PP_1734 -0.6 -2.3 Probable septum site-determining protein MinC compare
PP_0378 -0.6 -4.1 Pyrroloquinoline-quinone synthase compare
PP_5104 -0.6 -4.2 thiazole synthase compare
PP_2345 -0.6 -1.4 conserved exported protein of unknown function compare
PP_2720 -0.6 -1.3 conserved protein of unknown function compare
PP_1054 -0.6 -1.8 Type II secretion pathway protein XcpZ compare
PP_1015 -0.6 -3.8 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_4098 -0.6 -1.2 UvrABC system protein C compare
PP_2764 -0.6 -1.7 FMN reductase (NADPH) compare
PP_4804 -0.6 -1.4 RlpA-like lipoprotein compare
PP_3198 -0.6 -1.7 Ferredoxin, 2Fe-2S compare
PP_4642 -0.6 -1.1 Cyclic diguanosine monophosphate-binding protein compare
PP_0381 -0.6 -3.2 Coenzyme PQQ synthesis protein F compare
PP_0065 -0.6 -2.3 NAD-binding component of TrK potassium transporter compare
PP_1016 -0.6 -4.1 mannose/glucose ABC transporter, permease protein conserved
PP_0395 -0.6 -4.4 putative type IV piliation protein compare
PP_0653 -0.5 -1.2 conserved protein of unknown function compare
PP_3790 -0.5 -3.8 diaminopimelate epimerase compare
PP_1034 -0.5 -4.3 multicopper oxidase compare
PP_0913 -0.5 -3.3 conserved exported protein of unknown function compare
PP_4847 -0.5 -1.3 chaperone modulatory of CbpA co-chaperone protein compare
PP_0396 -0.5 -4.4 conserved protein of unknown function compare
PP_3647 -0.5 -1.7 putative Oxidoreductase compare
PP_5473 -0.5 -1.3 putative transcriptional regulator, LuxR family compare
PP_1783 -0.5 -1.1 dTDP-glucose pyrophosphorylase compare
PP_5528 -0.5 -1.3 conserved protein of unknown function compare
PP_5090 -0.5 -2.0 putative cell division protein compare
PP_5028 -0.5 -2.1 proline iminopeptidase compare
PP_4006 -0.5 -3.9 Putative arginyl-tRNA--protein transferase compare
PP_1941 -0.5 -2.8 conserved protein of unknown function compare
PP_2858 -0.5 -2.1 conserved exported protein of unknown function compare
PP_4126 -0.5 -0.9 NADH-quinone oxidoreductase subunit I compare
PP_2208 -0.5 -3.4 phosphonoacetaldehyde hydrolase compare
PP_2580 -0.5 -2.5 conserved protein of unknown function compare
PP_0125 -0.5 -2.0 putative cytochrome c-type protein compare
PP_3771 -0.5 -1.7 conserved protein of unknown function compare
PP_5707 -0.5 -2.4 conserved protein of unknown function compare
PP_0380 -0.5 -2.8 Coenzyme PQQ synthesis protein A compare
PP_1938 -0.5 -1.8 conserved protein of unknown function compare
PP_1217 -0.5 -2.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5582 -0.5 -1.2 conserved protein of unknown function compare
PP_5597 -0.5 -1.6 conserved protein of unknown function compare
PP_2631 -0.5 -1.4 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1987 -0.5 -1.7 Methlytransferase, UbiE/COQ5 family compare
PP_1589 -0.5 -3.4 uridylyltransferase compare
PP_5604 -0.5 -1.4 putative subtilisin-like serine protease compare
PP_4121 -0.5 -2.0 NADH-quinone oxidoreductase subunit C/D compare
PP_1733 -0.5 -1.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_4699 -0.5 -2.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0855 -0.5 -1.2 conserved protein of unknown function compare
PP_2928 -0.5 -3.0 Saccharopine dehydrogenase compare
PP_2510 -0.5 -1.6 conserved protein of unknown function compare
PP_5035 -0.5 -3.0 Histidine utilization repressor compare
PP_3192 -0.5 -2.5 conserved protein of unknown function compare
PP_0397 -0.5 -4.2 protein kinase compare
PP_2655 -0.5 -2.1 conserved protein of unknown function compare
PP_2378 -0.5 -1.3 Fe/S biogenesis protein NfuA compare
PP_4045 -0.5 -1.3 conserved protein of unknown function compare
PP_1779 -0.5 -2.4 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_3938 -0.5 -1.1 conserved protein of unknown function compare
PP_2929 -0.5 -3.4 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_2835 -0.5 -2.2 putative oxidoreductase compare
PP_0841 -0.5 -2.0 DNA-binding transcriptional dual regulator 2Fe-2S cluster IscR compare
PP_5217 -0.5 -3.8 Polyphosphate kinase compare
PP_5702 -0.5 -2.2 conserved protein of unknown function compare
PP_5100 -0.5 -2.0 dITP/XTP pyrophosphatase compare
PP_5529 -0.4 -2.5 putative epimerase compare
PP_5225 -0.4 -1.0 frataxin compare
PP_1994 -0.4 -1.3 tRNA pseudouridine (38-40)synthase compare
PP_4879 -0.4 -2.2 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB compare
PP_5295 -0.4 -1.3 conserved protein of unknown function compare
PP_2031 -0.4 -1.5 conserved protein of unknown function compare
PP_5274 -0.4 -1.5 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms