Experiment set17IT028 for Pseudomonas simiae WCS417

Compare to:

Carbon source L-Citrulline 5 mM

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.6 -5.2 isopropylmalate isomerase compare
PS417_01855 -5.0 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_02175 -4.4 -4.3 transcriptional regulator compare
PS417_18560 -4.3 -8.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_26740 -4.1 -9.2 homoserine acetyltransferase compare
PS417_25720 -4.1 -9.0 anthranilate synthase component II compare
PS417_12290 -4.1 -8.6 sulfite reductase compare
PS417_18595 -4.0 -5.5 3-isopropylmalate dehydratase compare
PS417_23800 -3.9 -14.1 ketol-acid reductoisomerase compare
PS417_25725 -3.9 -14.4 anthranilate synthase component I compare
PS417_00180 -3.8 -2.6 tryptophan synthase subunit alpha compare
PS417_04415 -3.8 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_20125 -3.7 -3.6 phosphoribosylglycinamide formyltransferase compare
PS417_26745 -3.6 -7.2 methionine biosynthesis protein MetW compare
PS417_04420 -3.6 -11.9 histidinol dehydrogenase compare
PS417_01565 -3.6 -5.2 imidazole glycerol phosphate synthase compare
PS417_17580 -3.6 -4.5 citrulline utilization hydrolase (from data) conserved
PS417_23805 -3.6 -5.0 acetolactate synthase 3 regulatory subunit compare
PS417_23810 -3.6 -12.1 acetolactate synthase 3 catalytic subunit compare
PS417_17585 -3.5 -8.0 ornithine cyclodeaminase conserved
PS417_02510 -3.5 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_18585 -3.4 -6.9 3-isopropylmalate dehydrogenase compare
PS417_18530 -3.4 -6.5 O-succinylhomoserine sulfhydrylase compare
PS417_01575 -3.4 -6.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02415 -3.4 -5.8 phosphoserine phosphatase compare
PS417_00185 -3.3 -4.1 tryptophan synthase subunit beta compare
PS417_27040 -3.3 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_16465 -3.2 -10.4 sirohydrochlorin ferrochelatase compare
PS417_01580 -3.1 -1.4 imidazole glycerol phosphate synthase compare
PS417_26890 -3.0 -5.4 dihydroxy-acid dehydratase compare
PS417_26995 -3.0 -9.7 phosphoserine phosphatase compare
PS417_23900 -2.9 -10.7 poly(A) polymerase compare
PS417_25715 -2.8 -6.5 anthranilate phosphoribosyltransferase compare
PS417_12855 -2.8 -4.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_17595 -2.7 -5.2 amino acid ABC transporter permease compare
PS417_01850 -2.7 -5.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23995 -2.7 -1.5 preprotein translocase subunit SecG compare
PS417_27435 -2.6 -6.3 polyphosphate kinase compare
PS417_04365 -2.6 -2.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_17610 -2.5 -2.4 AsnC family transcriptional regulator compare
PS417_16570 -2.4 -7.8 isocitrate lyase compare
PS417_23110 -2.4 -6.7 2-isopropylmalate synthase compare
PS417_27835 -2.4 -9.1 endoribonuclease compare
PS417_27875 -2.3 -11.0 histidine kinase compare
PS417_01570 -2.3 -1.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_20160 -2.1 -3.6 cysteine synthase compare
PS417_26040 -2.1 -3.4 malate synthase compare
PS417_21750 -2.1 -12.7 acetyl-CoA synthetase compare
PS417_17600 -2.1 -12.1 amino acid ABC transporter permease compare
PS417_24155 -2.0 -1.9 ATP-binding protein compare
PS417_18690 -2.0 -5.1 aromatic amino acid aminotransferase compare
PS417_23770 -1.9 -2.2 exodeoxyribonuclease V subunit alpha compare
PS417_17420 -1.9 -6.0 ethanol oxidation regulatory protein ercA (from data) compare
PS417_07575 -1.9 -6.1 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_17605 -1.8 -5.8 amino acid transporter conserved
PS417_03925 -1.8 -5.9 nicotinate-nucleotide pyrophosphorylase compare
PS417_04410 -1.8 -1.9 hypothetical protein compare
PS417_04650 -1.8 -1.3 D-alanine--D-alanine ligase compare
PS417_23315 -1.7 -1.8 transcriptional regulator compare
PS417_22385 -1.7 -9.1 quinolinate synthase A compare
PS417_17470 -1.7 -3.1 LuxR family transcriptional regulator compare
PS417_23775 -1.7 -2.6 exodeoxyribonuclease V subunit beta compare
PS417_21430 -1.7 -2.0 3-oxoacyl-ACP synthase compare
PS417_27795 -1.6 -0.9 orotate phosphoribosyltransferase compare
PS417_24765 -1.6 -4.9 membrane protein compare
PS417_16715 -1.6 -2.3 DoxX family protein compare
PS417_08125 -1.6 -0.8 prephenate dehydratase compare
PS417_20985 -1.5 -1.9 porin compare
PS417_07640 -1.5 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_25710 -1.5 -1.0 indole-3-glycerol-phosphate synthase compare
PS417_24585 -1.5 -8.2 AMP nucleosidase compare
PS417_01950 -1.5 -5.2 malate dehydrogenase compare
PS417_17505 -1.5 -4.2 LuxR family transcriptional regulator compare
PS417_15325 -1.5 -1.5 type VI secretion protein compare
PS417_26985 -1.5 -4.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_11175 -1.4 -3.0 AraC family transcriptional regulator compare
PS417_27300 -1.4 -1.1 cell division protein ZapA compare
PS417_05840 -1.4 -3.7 LuxR family transcriptional regulator compare
PS417_17475 -1.4 -6.0 histidine kinase compare
PS417_23950 -1.4 -1.7 polynucleotide phosphorylase/polyadenylase compare
PS417_04375 -1.3 -1.9 ABC transporter ATP-binding protein compare
PS417_01210 -1.3 -7.0 hypothetical protein compare
PS417_08540 -1.3 -2.5 RNA helicase compare
PS417_05570 -1.3 -2.6 DeoR faimly transcriptional regulator compare
PS417_17590 -1.3 -1.6 ABC transporter substrate-binding protein compare
PS417_28225 -1.3 -1.7 hypothetical protein compare
PS417_21210 -1.3 -1.6 amidotransferase compare
PS417_07560 -1.3 -1.8 universal stress protein UspA compare
PS417_08730 -1.3 -2.1 cytochrome C compare
PS417_02555 -1.3 -8.5 exoribonuclease R compare
PS417_18310 -1.3 -1.0 hypothetical protein compare
PS417_04270 -1.2 -6.2 ribonuclease G compare
PS417_27870 -1.2 -2.7 ATP-dependent DNA helicase RecG compare
PS417_07170 -1.2 -4.0 hypothetical protein compare
PS417_07710 -1.2 -3.6 membrane protein compare
PS417_20635 -1.2 -1.2 ABC transporter ATP-binding protein compare
PS417_07115 -1.2 -7.5 L-aspartate oxidase compare
PS417_21125 -1.2 -4.2 phosphoadenosine phosphosulfate reductase compare
PS417_16990 -1.1 -4.2 acyl-CoA dehydrogenase compare
PS417_13510 -1.1 -1.2 polyketide cyclase compare
PS417_28080 -1.1 -7.4 phosphate ABC transporter permease compare
PS417_02805 -1.1 -1.2 urease subunit gamma compare
PS417_17780 -1.1 -1.2 Ais protein compare
PS417_17460 -1.1 -4.4 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) compare
PS417_10985 -1.1 -1.0 NADH:flavin oxidoreductase compare
PS417_13165 -1.1 -1.6 peroxidase compare
PS417_22795 -1.1 -1.3 exclusion suppressor FxsA compare
PS417_15745 -1.1 -2.1 lipid carrier protein compare
PS417_05535 -1.1 -1.7 Fis family transcriptional regulator compare
PS417_08410 -1.1 -2.5 hypothetical protein compare
PS417_28070 -1.0 -4.3 phosphate ABC transporter ATP-binding protein compare
PS417_00045 -1.0 -1.8 glycerol acyltransferase compare
PS417_21320 -1.0 -2.6 transcriptional regulator compare
PS417_27610 -1.0 -4.2 hypothetical protein compare
PS417_27585 -1.0 -1.5 diaminopimelate epimerase compare
PS417_23835 -1.0 -3.3 hypothetical protein compare
PS417_00915 -1.0 -3.8 aminotransferase compare
PS417_17980 -1.0 -2.1 ABC transporter permease compare
PS417_03260 -1.0 -1.4 5S ribosomal RNA compare
PS417_17455 -1.0 -2.4 cytochrome C compare
PS417_24810 -1.0 -5.6 aldehyde dehydrogenase compare
PS417_23135 -1.0 -1.5 GTP-binding protein compare
PS417_08685 -1.0 -1.8 flagellar hook-length control protein FliK compare
PS417_17415 -1.0 -2.8 histidine kinase compare
PS417_27135 -1.0 -0.8 glutamine synthetase compare
PS417_21700 -1.0 -1.9 arginine N-succinyltransferase compare
PS417_21630 -1.0 -1.7 magnesium transporter compare
PS417_04390 -1.0 -1.7 toluene tolerance protein compare
PS417_21690 -1.0 -3.7 N-succinylarginine dihydrolase compare
PS417_00065 -1.0 -1.6 3-methyladenine DNA glycosylase compare
PS417_08665 -1.0 -4.1 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_03815 -1.0 -1.6 DNA transporter compare
PS417_07470 -1.0 -1.3 hypothetical protein compare
PS417_18350 -1.0 -3.0 hypothetical protein compare
PS417_21680 -1.0 -1.6 succinylglutamate desuccinylase compare
PS417_08155 -1.0 -0.8 integration host factor subunit beta compare
PS417_17240 -1.0 -2.7 trigger factor compare
PS417_26730 -1.0 -0.7 pyrroline-5-carboxylate reductase compare
PS417_02740 -0.9 -1.7 LysR family transcriptional regulator compare
PS417_18540 -0.9 -2.9 colicin V production CvpA compare
PS417_21425 -0.9 -1.7 4-amino-4-deoxychorismate lyase compare
PS417_26725 -0.9 -2.6 hypothetical protein compare
PS417_27035 -0.9 -2.4 FAD-linked oxidase compare
PS417_24370 -0.9 -0.8 (2Fe-2S)-binding protein compare
PS417_22445 -0.9 -1.9 ATP-dependent DNA helicase RuvB compare
PS417_24710 -0.9 -3.3 lipoprotein compare
PS417_03560 -0.9 -1.3 GTP-binding protein compare
PS417_15675 -0.9 -3.8 chemotaxis protein compare
PS417_03300 -0.9 -2.1 alanine acetyltransferase compare
PS417_02690 -0.9 -3.4 N-acylglucosamine 2-epimerase compare
PS417_15885 -0.9 -1.2 GCN5 family acetyltransferase compare
PS417_16490 -0.9 -1.3 cell division protein FtsK compare
PS417_10665 -0.9 -1.5 hypothetical protein compare
PS417_10720 -0.9 -2.4 chemotaxis protein CheY compare
PS417_22495 -0.9 -2.7 histidine triad (HIT) protein compare
PS417_01995 -0.9 -1.8 hypothetical protein compare
PS417_17565 -0.9 -1.7 branched-chain amino acid aminotransferase compare
PS417_02485 -0.9 -2.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_20785 -0.8 -2.4 transcriptional regulator compare
PS417_20855 -0.8 -1.2 hypothetical protein compare
PS417_18930 -0.8 -1.5 restriction endonuclease subunit S compare
PS417_04180 -0.8 -2.2 GntR family transcriptional regulator compare
PS417_21395 -0.8 -4.1 radical SAM protein compare
PS417_03705 -0.8 -2.6 2-alkenal reductase compare
PS417_18105 -0.8 -1.3 iron-dicitrate transporter substrate-binding subunit compare
PS417_16510 -0.8 -2.3 Clp protease ClpX compare
PS417_05985 -0.8 -2.3 chemotaxis protein CheY compare
PS417_18590 -0.8 -2.3 SAM-dependent methyltransferase compare
PS417_16310 -0.8 -2.5 membrane protein compare
PS417_17125 -0.8 -2.2 transcriptional regulator compare
PS417_07165 -0.8 -4.6 dihydrodipicolinate synthase compare
PS417_23025 -0.8 -3.9 murein transglycosylase compare
PS417_24785 -0.8 -1.0 nucleoside-diphosphate sugar epimerase compare
PS417_14600 -0.8 -2.8 bleomycin resistance protein compare
PS417_22340 -0.8 -2.1 carbamate kinase compare
PS417_06600 -0.8 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_16475 -0.8 -1.8 camphor resistance protein CrcB compare
PS417_11380 -0.8 -1.9 peptidylprolyl isomerase compare
PS417_27520 -0.8 -1.6 uroporphyrin-III methyltransferase compare
PS417_12695 -0.8 -3.3 mannitol dehydrogenase compare
PS417_02915 -0.8 -2.3 precorrin-3B C17-methyltransferase compare
PS417_24615 -0.8 -1.0 hypothetical protein compare
PS417_11640 -0.8 -2.3 GntR family transcriptional regulator compare
PS417_11945 -0.8 -0.8 hypothetical protein compare
PS417_02720 -0.8 -0.6 TetR family transcriptional regulator compare
PS417_01495 -0.8 -4.5 amino acid ABC transporter compare
PS417_07820 -0.8 -1.9 transposase compare
PS417_18420 -0.7 -1.9 deoxyribonuclease compare
PS417_04440 -0.7 -1.6 hypoxanthine-guanine phosphoribosyltransferase compare
PS417_19965 -0.7 -5.1 histidine kinase compare
PS417_13425 -0.7 -1.7 cupin compare
PS417_09150 -0.7 -1.7 energy transducer TonB compare
PS417_17450 -0.7 -2.0 amino acid ABC transporter substrate-binding protein compare
PS417_04170 -0.7 -3.5 stringent starvation protein A compare
PS417_09325 -0.7 -2.5 peptidase S41 compare
PS417_11845 -0.7 -2.6 RpiR family transcriptional regulator compare
PS417_07985 -0.7 -1.2 AbrB family transcriptional regulator compare
PS417_02475 -0.7 -2.0 N-acetylmuramoyl-L-alanine amidase compare
PS417_12110 -0.7 -1.5 ATP-binding protein compare
PS417_13490 -0.7 -1.4 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Citrulline in Pseudomonas simiae WCS417

For carbon source L-Citrulline across organisms