Experiment set17IT028 for Pseudomonas putida KT2440

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
PP_2402 -2.9 -3.6 putative Sensor histidine kinase compare
PP_0293 -2.7 -2.6 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4008 -2.4 -9.7 ATP-dependent serine protease compare
PP_1898 -2.3 -3.7 MotA/TolQ/ExbB proton channel family protein compare
PP_5289 -2.3 -7.2 Acetylglutamate kinase compare
PP_5328 -2.2 -3.8 putative phosphate transport system permease protein compare
PP_4122 -2.1 -3.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0719 -2.1 -2.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0001 -2.0 -2.1 probable chromosome-partitioning protein compare
PP_0833 -2.0 -2.7 queuine tRNA-ribosyltransferase compare
PP_4126 -2.0 -2.7 NADH-quinone oxidoreductase subunit I compare
PP_1654 -1.9 -3.2 cysteine synthase B compare
PP_1733 -1.9 -3.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_4342 -1.9 -5.7 flagellar synthesis regulator, putative ATPase compare
PP_4262 -1.9 -2.8 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4909 -1.9 -7.2 phosphoserine phosphatase compare
PP_2370 -1.9 -4.7 conserved protein of unknown function compare
PP_1778 -1.8 -6.6 Lipopolysaccharide ABC export system, permease protein compare
PP_1779 -1.8 -7.2 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4265 -1.8 -1.2 DNA-binding transcriptional dual regulator compare
PP_0184 -1.8 -8.9 Argininosuccinate lyase compare
PP_4261 -1.8 -5.3 cation-transporting P-type ATPase compare
PP_4804 -1.7 -3.3 RlpA-like lipoprotein compare
PP_2378 -1.7 -4.1 Fe/S biogenesis protein NfuA compare
PP_4994 -1.7 -4.5 conserved protein of unknown function compare
PP_4724 -1.7 -1.9 Carbamoyl-phosphate synthase small chain compare
PP_0630 -1.6 -2.0 DNA gyrase inhibitor YacG compare
PP_1088 -1.6 -11.2 Argininosuccinate synthase compare
PP_1232 -1.6 -7.2 conserved exported protein of unknown function compare
PP_1734 -1.6 -4.6 Probable septum site-determining protein MinC compare
PP_1318 -1.6 -6.9 Cytochrome b compare
PP_0292 -1.6 -3.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0339 -1.6 -3.1 Pyruvate dehydrogenase E1 component compare
PP_4058 -1.6 -10.6 1,4-alpha-glucan branching enzyme compare
PP_1783 -1.5 -2.7 dTDP-glucose pyrophosphorylase compare
PP_0691 -1.5 -1.4 Glutamate 5-kinase compare
PP_4723 -1.5 -2.3 Carbamoyl-phosphate synthase large chain compare
PP_4129 -1.5 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_5185 -1.5 -5.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0393 -1.5 -3.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1319 -1.4 -5.9 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0246 -1.4 -3.8 two-component system DNA-binding response transcriptional dual regulator compare
PP_0872 -1.4 -6.9 Peptide chain release factor 3 compare
PP_5217 -1.4 -9.6 Polyphosphate kinase compare
PP_1317 -1.4 -4.5 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4892 -1.3 -5.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4124 -1.3 -4.4 NADH-quinone oxidoreductase subunit G compare
PP_5321 -1.3 -5.9 two-component system sensory histidine kinase compare
PP_0888 -1.3 -3.4 Photosynthetic apparatus regulatory protein RegA compare
PP_4891 -1.3 -4.6 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_0127 -1.3 -5.0 Thiol:disulfide interchange protein compare
PP_4263 -1.3 -3.8 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_5329 -1.3 -3.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0290 -1.2 -6.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4204 -1.2 -4.1 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4121 -1.2 -5.1 NADH-quinone oxidoreductase subunit C/D compare
PP_0406 -1.2 -3.3 Nucleotidyltransferase family protein compare
PP_1428 -1.2 -1.9 Sigma factor AlgU negative regulatory protein compare
PP_4700 -1.2 -2.9 pantothenate synthetase compare
PP_2145 -1.2 -3.7 beta-N-acetylglucosaminidase compare
PP_0289 -1.2 -6.1 Imidazoleglycerol-phosphate dehydratase compare
PP_0856 -1.2 -1.5 conserved lipoprotein of unknown function compare
PP_4693 -1.1 -3.8 RNA polymerase-binding transcription factor DksA compare
PP_4131 -1.1 -4.7 NADH-quinone oxidoreductase subunit N compare
PP_2336 -1.1 -3.5 aconitate hydratase 1 compare
PP_1764 -1.1 -3.4 Phosphoglycolate phosphatase 2 compare
PP_5090 -1.1 -3.7 putative cell division protein compare
PP_4880 -1.1 -7.0 exoribonuclease R compare
PP_0401 -1.1 -2.5 Ribosomal RNA small subunit methyltransferase A compare
PP_5128 -1.1 -7.0 Dihydroxy-acid dehydratase compare
PP_1362 -1.1 -3.9 pyruvate kinase II compare
PP_0949 -1.1 -4.4 putative ATP-binding protein UPF0042 compare
PP_1988 -1.0 -6.2 3-isopropylmalate dehydrogenase compare
PP_0434 -1.0 -4.3 Anhydro-N-acetylmuramic acid kinase compare
PP_4937 -1.0 -2.4 toluene tolerance protein compare
PP_4722 -1.0 -4.9 Transcription elongation factor GreA compare
PP_4902 -1.0 -3.2 Oligoribonuclease compare
PP_5223 -1.0 -4.3 regulator of nucleotide diphosphokinase compare
PP_3511 -1.0 -5.3 Branched-chain-amino-acid aminotransferase compare
PP_4993 -1.0 -4.6 Glutathione synthetase compare
PP_4264 -1.0 -6.3 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_4895 -1.0 -2.4 tRNA dimethylallyltransferase compare
PP_1344 -0.9 -1.7 conserved protein of unknown function compare
PP_5320 -0.9 -5.4 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_4268 -0.9 -1.8 nucleoid-associated broad specificity regulator compare
PP_4286 -0.9 -5.9 allantoinase compare
PP_2379 -0.9 -4.4 putative cytochrome oxidase biogenesis protein compare
PP_0435 -0.9 -5.3 Peptidase, M23/M37 family compare
PP_1198 -0.9 -1.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4546 -0.9 -3.6 ATP-dependent helicase HrpA compare
PP_5014 -0.9 -2.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_4482 -0.9 -2.7 Transcriptional regulator, AraC family compare
PP_0065 -0.9 -3.1 NAD-binding component of TrK potassium transporter compare
PP_1224 -0.9 -4.3 periplasmic subunit of the TolQRA transport system compare
PP_5327 -0.9 -3.0 putative phosphate ABC transporter, permease subunit compare
PP_4236 -0.9 -3.8 putative Thiol:disulfide interchange protein dsbE compare
PP_4009 -0.9 -3.0 ATP-dependent Clp protease adapter protein ClpS compare
PP_4098 -0.9 -2.8 UvrABC system protein C compare
PP_1099 -0.9 -2.8 Cold shock protein CapB compare
PP_5015 -0.8 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4941 -0.8 -3.7 conserved exported protein of unknown function compare
PP_4678 -0.8 -6.8 Ketol-acid reductoisomerase compare
PP_1824 -0.8 -2.4 Smr domain protein compare
PP_0291 -0.8 -2.7 conserved protein of unknown function compare
PP_0809 -0.8 -5.7 disulfide bond formation protein B compare
PP_1216 -0.8 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4356 -0.8 -3.3 Flagellar protein FliO compare
PP_5331 -0.8 -3.4 Long-chain acyl-CoA thioester hydrolase compare
PP_0405 -0.8 -5.3 conserved protein of unknown function compare
PP_4250 -0.8 -4.7 cytochrome c oxidase subunit I, cbb3-type compare
PP_4379 -0.8 -2.9 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3999 -0.8 -4.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5139 -0.8 -3.8 cadmium translocating P-type ATPase compare
PP_0547 -0.8 -3.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_1986 -0.8 -2.1 3-isopropylmalate dehydratase small subunit compare
PP_4874 -0.8 -1.5 50S ribosomal protein L9 compare
PP_4004 -0.8 -3.3 DNA translocase FtsK compare
PP_2029 -0.8 -2.9 von Willebrand factor type A domain protein compare
PP_0345 -0.8 -2.4 putative Heptose kinase WapP compare
PP_2144 -0.8 -3.2 Transcriptional regulator, TetR family compare
PP_5095 -0.8 -0.9 pyrroline-5-carboxylate reductase compare
PP_1022 -0.8 -4.0 glucose 6-phosphate-1-dehydrogenase compare
PP_5202 -0.8 -2.2 putative cell division protein compare
PP_3505 -0.8 -1.6 conserved protein of unknown function compare
PP_4785 -0.8 -4.4 conserved exported protein of unknown function compare
PP_0063 -0.7 -3.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_2299 -0.7 -2.4 Trigger factor compare
PP_5155 -0.7 -3.3 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0319 -0.7 -1.7 conserved protein of unknown function compare
PP_5045 -0.7 -3.0 tRNA sulfurtransferase compare
PP_5594 -0.7 -1.7 conserved protein of unknown function compare
PP_0803 -0.7 -5.1 Protein secretion ABC efflux system, membrane fusion protein compare
PP_5201 -0.7 -2.0 conserved protein of unknown function, UPF0149 family compare
PP_1187 -0.7 -3.7 sensor protein compare
PP_3258 -0.7 -2.7 conserved protein of unknown function compare
PP_4120 -0.7 -1.9 NADH-quinone oxidoreductase subunit B compare
PP_4726 -0.7 -2.0 Chaperone protein DnaJ compare
PP_4385 -0.7 -3.7 flagellar basal-body rod protein FlgG compare
PP_3408 -0.7 -2.6 cobalt transporter subunit A compare
PP_0123 -0.7 -4.9 DNA polymerase I, 5 compare
PP_4910 -0.7 -2.4 conserved protein of unknown function compare
PP_0967 -0.7 -4.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4560 -0.7 -2.0 putative Ribonuclease BN compare
PP_2341 -0.7 -2.4 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_4803 -0.7 -4.7 D-alanyl-D-alanine carboxypeptidase compare
PP_1468 -0.7 -2.2 Tyrosine recombinase XerD compare
PP_5514 -0.7 -2.7 conserved protein of unknown function compare
PP_4343 -0.7 -2.1 Flagellar biosynthesis protein FlhF compare
PP_2510 -0.7 -2.2 conserved protein of unknown function compare
PP_0804 -0.7 -5.0 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_0165 -0.7 -5.9 GGDEF domain protein compare
PP_4066 -0.7 -2.5 methylglutaconyl-CoA hydratase compare
PP_3938 -0.7 -1.0 conserved protein of unknown function compare
PP_4251 -0.7 -2.4 cytochrome c oxidase subunit, cbb3-type compare
PP_3649 -0.7 -3.7 Transcriptional regulator, GntR family compare
PP_5350 -0.7 -2.3 Transcriptional regulator, RpiR family compare
PP_4517 -0.7 -1.7 conserved protein of unknown function compare
PP_4519 -0.7 -5.9 Agglutination protein compare
PP_0852 -0.7 -3.4 Transcriptional regulator, Cro/CI family compare
PP_1237 -0.7 -1.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1217 -0.7 -2.6 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4377 -0.6 -2.2 putative Flagellin FlaG compare
PP_0003 -0.6 -2.1 16S RNA methyltransferase compare
PP_2371 -0.6 -2.9 Sulphite reductase hemoprotein, beta subunit compare
PP_1675 -0.6 -4.3 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_5007 -0.6 -2.1 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2575 -0.6 -1.4 conserved exported protein of unknown function compare
PP_4836 -0.6 -2.9 conserved exported protein of unknown function compare
PP_5243 -0.6 -2.9 putative hydrolase compare
PP_4320 -0.6 -2.1 cytochrome c-type biogenesis protein compare
PP_0789 -0.6 -2.8 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_t10 -0.6 -1.7 tRNA-Pro compare
PP_4471 -0.6 -3.1 Magnesium transporter compare
PP_5528 -0.6 -1.4 conserved protein of unknown function compare
PP_t29 -0.6 -1.9 tRNA-Ala compare
PP_4944 -0.6 -2.5 Carbamoyltransferase compare
PP_3892 -0.6 -1.4 conserved protein of unknown function compare
PP_4696 -0.6 -2.4 Nitrogen regulation protein NR(I) compare
PP_0805 -0.6 -4.2 Outer membrane efflux protein compare
PP_3551 -0.6 -1.9 DNA-binding response regulator, LuxR family compare
PP_4591 -0.6 -2.7 Ribonuclease D compare
PP_2247 -0.6 -2.5 putative Endoribonuclease compare
PP_3411 -0.6 -1.7 conserved protein of unknown function compare
PP_5216 -0.6 -1.2 exopolyphosphatase compare
PP_0167 -0.6 -5.3 Toxin secretion ATP-binding protein compare
PP_4253 -0.6 -1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_0846 -0.6 -0.9 DnaK-like molecular chaperone specific for IscU compare
PP_0806 -0.6 -5.5 putative Surface adhesion protein compare
PP_1623 -0.6 -4.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_1860 -0.6 -2.5 Organic hydroperoxide resistance transcriptional regulator compare
PP_4792 -0.6 -2.2 conserved exported protein of unknown function compare
PP_0484 -0.6 -3.1 transporter of an unknown substrate compare
PP_3283 -0.6 -3.5 1,2-epoxyphenylacetyl-CoA isomerase compare
PP_1679 -0.6 -2.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_0274 -0.6 -1.6 putative transcriptional regulator containing HTH domain compare
PP_0832 -0.6 -2.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_2337 -0.6 -1.2 aconitate isomerase compare
PP_4824 -0.6 -2.9 Sensor histidine kinase/response regulator compare
PP_5055 -0.6 -3.1 Sulfurtransferase compare
PP_5430 -0.6 -2.2 protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in lb experiments