Experiment set17IT027 for Pseudomonas simiae WCS417

Compare to:

Carbon source L-Citrulline 10 mM

200 most important genes:

  gene name fitness t score description  
PS417_18600 -5.9 -4.5 isopropylmalate isomerase compare
PS417_27040 -5.8 -3.1 3-phosphoglycerate dehydrogenase compare
PS417_01855 -5.1 -4.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_07640 -4.3 -4.7 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23995 -4.3 -1.5 preprotein translocase subunit SecG compare
PS417_04415 -4.1 -8.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25720 -3.9 -9.0 anthranilate synthase component II compare
PS417_18560 -3.9 -8.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18595 -3.8 -4.8 3-isopropylmalate dehydratase compare
PS417_17585 -3.8 -8.9 ornithine cyclodeaminase conserved
PS417_25715 -3.8 -6.7 anthranilate phosphoribosyltransferase compare
PS417_17580 -3.6 -4.7 citrulline utilization hydrolase (from data) conserved
PS417_18585 -3.5 -6.3 3-isopropylmalate dehydrogenase compare
PS417_25725 -3.5 -15.0 anthranilate synthase component I compare
PS417_25710 -3.4 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_26740 -3.4 -12.2 homoserine acetyltransferase compare
PS417_23800 -3.4 -12.1 ketol-acid reductoisomerase compare
PS417_27435 -3.4 -6.8 polyphosphate kinase compare
PS417_26890 -3.3 -6.9 dihydroxy-acid dehydratase compare
PS417_23805 -3.3 -5.8 acetolactate synthase 3 regulatory subunit compare
PS417_23810 -3.3 -9.7 acetolactate synthase 3 catalytic subunit compare
PS417_02510 -3.3 -8.1 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01575 -3.2 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27795 -3.2 -1.1 orotate phosphoribosyltransferase compare
PS417_23900 -3.1 -12.4 poly(A) polymerase compare
PS417_12290 -3.0 -6.9 sulfite reductase compare
PS417_18530 -3.0 -5.4 O-succinylhomoserine sulfhydrylase compare
PS417_01565 -3.0 -4.0 imidazole glycerol phosphate synthase compare
PS417_16465 -3.0 -9.6 sirohydrochlorin ferrochelatase compare
PS417_04420 -3.0 -8.4 histidinol dehydrogenase compare
PS417_26745 -3.0 -5.1 methionine biosynthesis protein MetW compare
PS417_20125 -2.9 -5.1 phosphoribosylglycinamide formyltransferase compare
PS417_23110 -2.8 -9.5 2-isopropylmalate synthase compare
PS417_01580 -2.7 -1.7 imidazole glycerol phosphate synthase compare
PS417_01850 -2.6 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_02175 -2.5 -4.3 transcriptional regulator compare
PS417_26040 -2.5 -5.0 malate synthase compare
PS417_23770 -2.5 -2.9 exodeoxyribonuclease V subunit alpha compare
PS417_00185 -2.5 -3.9 tryptophan synthase subunit beta compare
PS417_18310 -2.4 -2.4 hypothetical protein compare
PS417_16570 -2.4 -10.8 isocitrate lyase compare
PS417_20160 -2.4 -3.3 cysteine synthase compare
PS417_20985 -2.4 -2.3 porin compare
PS417_26995 -2.4 -8.1 phosphoserine phosphatase compare
PS417_17605 -2.4 -6.9 amino acid transporter conserved
PS417_06685 -2.4 -1.4 beta-ketoadipyl CoA thiolase compare
PS417_01605 -2.3 -1.6 phosphoglycerate mutase compare
PS417_17610 -2.2 -2.6 AsnC family transcriptional regulator compare
PS417_27875 -2.1 -8.2 histidine kinase compare
PS417_17595 -2.1 -5.2 amino acid ABC transporter permease compare
PS417_00180 -2.0 -2.7 tryptophan synthase subunit alpha compare
PS417_12855 -2.0 -5.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_17600 -1.9 -9.0 amino acid ABC transporter permease compare
PS417_24765 -1.9 -3.8 membrane protein compare
PS417_01920 -1.9 -1.4 ATP-dependent protease subunit HslV compare
PS417_27835 -1.9 -8.5 endoribonuclease compare
PS417_04365 -1.9 -1.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21750 -1.9 -13.0 acetyl-CoA synthetase compare
PS417_07170 -1.8 -4.3 hypothetical protein compare
PS417_02415 -1.7 -4.0 phosphoserine phosphatase compare
PS417_17455 -1.6 -2.8 cytochrome C compare
PS417_07575 -1.6 -4.7 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_03925 -1.6 -9.5 nicotinate-nucleotide pyrophosphorylase compare
PS417_22450 -1.6 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_01570 -1.6 -2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01210 -1.6 -7.4 hypothetical protein compare
PS417_24935 -1.5 -1.4 hypothetical protein compare
PS417_18690 -1.5 -2.9 aromatic amino acid aminotransferase compare
PS417_21655 -1.5 -1.3 aspartate kinase compare
PS417_08130 -1.5 -2.9 aspartate aminotransferase compare
PS417_04375 -1.5 -2.2 ABC transporter ATP-binding protein compare
PS417_15770 -1.5 -1.7 pyridoxine 5'-phosphate oxidase compare
PS417_02225 -1.5 -3.2 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_27585 -1.4 -2.5 diaminopimelate epimerase compare
PS417_21430 -1.4 -2.0 3-oxoacyl-ACP synthase compare
PS417_17590 -1.4 -1.9 ABC transporter substrate-binding protein compare
PS417_26985 -1.4 -5.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_17420 -1.4 -6.6 ethanol oxidation regulatory protein ercA (from data) compare
PS417_22385 -1.3 -7.4 quinolinate synthase A compare
PS417_10425 -1.3 -2.1 hypothetical protein compare
PS417_08730 -1.3 -1.3 cytochrome C compare
PS417_02555 -1.3 -8.5 exoribonuclease R compare
PS417_05570 -1.3 -3.5 DeoR faimly transcriptional regulator compare
PS417_01560 -1.3 -2.5 imidazoleglycerol-phosphate dehydratase compare
PS417_16990 -1.3 -5.1 acyl-CoA dehydrogenase compare
PS417_06245 -1.3 -1.8 zinc metallopeptidase RseP compare
PS417_12355 -1.3 -2.0 magnesium chelatase compare
PS417_23950 -1.3 -2.0 polynucleotide phosphorylase/polyadenylase compare
PS417_27035 -1.3 -3.0 FAD-linked oxidase compare
PS417_20855 -1.2 -1.6 hypothetical protein compare
PS417_01950 -1.2 -4.0 malate dehydrogenase compare
PS417_23135 -1.2 -1.7 GTP-binding protein compare
PS417_22445 -1.2 -2.6 ATP-dependent DNA helicase RuvB compare
PS417_24370 -1.2 -0.9 (2Fe-2S)-binding protein compare
PS417_24585 -1.2 -6.2 AMP nucleosidase compare
PS417_05165 -1.1 -2.2 cytosol aminopeptidase compare
PS417_08540 -1.1 -2.2 RNA helicase compare
PS417_17460 -1.1 -5.6 Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) (from data) compare
PS417_01715 -1.1 -1.5 hypothetical protein compare
PS417_18780 -1.1 -1.7 flavin reductase compare
PS417_21425 -1.1 -1.8 4-amino-4-deoxychorismate lyase compare
PS417_24155 -1.1 -1.7 ATP-binding protein compare
PS417_22565 -1.1 -0.9 formyltetrahydrofolate deformylase compare
PS417_06200 -1.1 -3.5 protein-PII uridylyltransferase compare
PS417_04270 -1.1 -6.6 ribonuclease G compare
PS417_21680 -1.1 -1.5 succinylglutamate desuccinylase compare
PS417_16510 -1.1 -2.9 Clp protease ClpX compare
PS417_04595 -1.1 -2.2 cell division protein MraZ compare
PS417_14305 -1.1 -2.7 hydroxyproline-2-epimerase compare
PS417_26420 -1.1 -1.7 hypothetical protein compare
PS417_04385 -1.0 -3.1 organic solvent ABC transporter substrate-binding protein compare
PS417_17475 -1.0 -5.8 histidine kinase compare
PS417_21125 -1.0 -4.7 phosphoadenosine phosphosulfate reductase compare
PS417_24895 -1.0 -1.3 hypothetical protein compare
PS417_05985 -1.0 -2.7 chemotaxis protein CheY compare
PS417_08125 -1.0 -0.6 prephenate dehydratase compare
PS417_17415 -1.0 -3.8 histidine kinase compare
PS417_19335 -1.0 -1.8 isochorismatase compare
PS417_04390 -1.0 -2.2 toluene tolerance protein compare
PS417_07115 -1.0 -5.7 L-aspartate oxidase compare
PS417_23025 -1.0 -3.9 murein transglycosylase compare
PS417_21690 -1.0 -3.3 N-succinylarginine dihydrolase compare
PS417_09150 -1.0 -2.1 energy transducer TonB compare
PS417_27610 -1.0 -5.2 hypothetical protein compare
PS417_07820 -1.0 -1.6 transposase compare
PS417_13855 -1.0 -1.2 acetyl-CoA acetyltransferase compare
PS417_07710 -1.0 -3.2 membrane protein compare
PS417_28070 -0.9 -4.5 phosphate ABC transporter ATP-binding protein compare
PS417_02255 -0.9 -1.8 lipopolysaccharide kinase compare
PS417_27605 -0.9 -3.7 hypothetical protein compare
PS417_02690 -0.9 -4.6 N-acylglucosamine 2-epimerase compare
PS417_05840 -0.9 -2.5 LuxR family transcriptional regulator compare
PS417_15540 -0.9 -1.4 NUDIX hydrolase compare
PS417_18635 -0.9 -3.0 4-hydroxybenzoyl-CoA thioesterase compare
PS417_12565 -0.9 -1.8 2-dehydro-3-deoxygluconokinase compare
PS417_12540 -0.9 -2.2 hypothetical protein compare
PS417_04180 -0.9 -1.9 GntR family transcriptional regulator compare
PS417_05850 -0.9 -3.9 LysR family transcriptional regulator compare
PS417_05820 -0.9 -2.1 recombinase RecX compare
PS417_17470 -0.9 -2.6 LuxR family transcriptional regulator compare
PS417_24810 -0.9 -5.9 aldehyde dehydrogenase compare
PS417_08515 -0.9 -3.0 hypothetical protein compare
PS417_01485 -0.9 -5.5 ABC transporter permease compare
PS417_11055 -0.9 -2.2 AraC family transcriptional regulator compare
PS417_06945 -0.9 -1.1 membrane protein compare
PS417_28020 -0.9 -1.6 chorismate--pyruvate lyase compare
PS417_19965 -0.9 -5.5 histidine kinase compare
PS417_14515 -0.9 -1.5 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_17505 -0.9 -1.9 LuxR family transcriptional regulator compare
PS417_28515 -0.8 -1.9 16S rRNA methyltransferase compare
PS417_13445 -0.8 -1.6 D-aminopeptidase compare
PS417_18590 -0.8 -1.6 SAM-dependent methyltransferase compare
PS417_12455 -0.8 -1.7 hydrolase compare
PS417_05365 -0.8 -1.5 FAD-binding protein compare
PS417_02560 -0.8 -1.4 23S rRNA methyltransferase compare
PS417_25975 -0.8 -3.0 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_24710 -0.8 -4.7 lipoprotein compare
PS417_27870 -0.8 -2.1 ATP-dependent DNA helicase RecG compare
PS417_02385 -0.8 -1.2 esterase compare
PS417_02740 -0.8 -1.2 LysR family transcriptional regulator compare
PS417_00925 -0.8 -1.7 hypothetical protein compare
PS417_00565 -0.8 -2.9 NAD(P) transhydrogenase compare
PS417_18545 -0.8 -1.7 cell division protein compare
PS417_08045 -0.8 -1.7 uracil permease compare
PS417_01495 -0.8 -4.2 amino acid ABC transporter compare
PS417_22210 -0.8 -1.4 AraC family transcriptional regulator compare
PS417_07455 -0.8 -1.5 glutamine amidotransferase compare
PS417_28080 -0.8 -5.7 phosphate ABC transporter permease compare
PS417_28270 -0.8 -3.2 hypothetical protein compare
PS417_17480 -0.8 -3.0 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_28315 -0.8 -1.5 zinc ABC transporter permease compare
PS417_17930 -0.8 -1.2 aldehyde dehydrogenase compare
PS417_10045 -0.8 -2.5 hypothetical protein compare
PS417_17485 -0.8 -3.1 membrane protein compare
PS417_12910 -0.8 -2.3 alanine racemase compare
PS417_24745 -0.8 -2.4 gamma-glutamyl phosphate reductase compare
PS417_12035 -0.8 -2.1 dihydroxyacetone kinase compare
PS417_06140 -0.8 -2.2 cold-shock protein compare
PS417_11175 -0.8 -1.8 AraC family transcriptional regulator compare
PS417_20520 -0.8 -1.5 3-phosphoglycerate kinase compare
PS417_17125 -0.8 -2.5 transcriptional regulator compare
PS417_21695 -0.8 -2.1 succinylglutamate-semialdehyde dehydrogenase compare
PS417_15085 -0.8 -2.3 ATPase AAA compare
PS417_22495 -0.7 -2.5 histidine triad (HIT) protein compare
PS417_15090 -0.7 -1.5 hypothetical protein compare
PS417_14085 -0.7 -2.0 hypothetical protein compare
PS417_14890 -0.7 -1.2 LysR family transcriptional regulator compare
PS417_01915 -0.7 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_15095 -0.7 -1.6 hypothetical protein compare
PS417_08665 -0.7 -3.2 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_12310 -0.7 -3.4 methionine synthase compare
PS417_02485 -0.7 -2.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_22580 -0.7 -1.9 membrane protein compare
PS417_00220 -0.7 -1.1 hypothetical protein compare
PS417_14835 -0.7 -1.2 amidase compare
PS417_05990 -0.7 -2.4 diguanylate cyclase compare
PS417_04585 -0.7 -0.8 hypothetical protein compare
PS417_24630 -0.7 -1.7 ATP-binding protein compare
PS417_21395 -0.7 -3.9 radical SAM protein compare
PS417_04380 -0.7 -0.6 ABC transporter permease compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Citrulline in Pseudomonas simiae WCS417

For carbon source L-Citrulline across organisms