Experiment set17IT027 for Pseudomonas putida KT2440

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
PP_5095 -4.1 -2.8 pyrroline-5-carboxylate reductase compare
PP_1428 -3.4 -3.9 Sigma factor AlgU negative regulatory protein compare
PP_4008 -2.9 -11.6 ATP-dependent serine protease compare
PP_2336 -2.8 -5.6 aconitate hydratase 1 compare
PP_4804 -2.8 -3.3 RlpA-like lipoprotein compare
PP_0846 -2.6 -2.3 DnaK-like molecular chaperone specific for IscU compare
PP_2402 -2.4 -3.4 putative Sensor histidine kinase compare
PP_0293 -2.3 -2.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4263 -2.2 -4.5 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_1778 -2.2 -9.0 Lipopolysaccharide ABC export system, permease protein compare
PP_1319 -2.1 -7.0 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_1898 -2.1 -4.4 MotA/TolQ/ExbB proton channel family protein compare
PP_1734 -2.1 -6.1 Probable septum site-determining protein MinC compare
PP_0719 -2.0 -2.3 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4909 -2.0 -6.7 phosphoserine phosphatase compare
PP_1317 -1.9 -4.8 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_4120 -1.9 -4.1 NADH-quinone oxidoreductase subunit B compare
PP_5090 -1.8 -4.5 putative cell division protein compare
PP_4265 -1.8 -1.2 DNA-binding transcriptional dual regulator compare
PP_4895 -1.8 -3.9 tRNA dimethylallyltransferase compare
PP_4261 -1.7 -6.2 cation-transporting P-type ATPase compare
PP_4262 -1.7 -3.3 Cytochrome oxidase maturation protein, cbb3-type compare
PP_4937 -1.7 -4.3 toluene tolerance protein compare
PP_4892 -1.7 -7.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_4058 -1.7 -9.7 1,4-alpha-glucan branching enzyme compare
PP_1779 -1.7 -9.0 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_4122 -1.7 -2.8 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0184 -1.6 -7.8 Argininosuccinate lyase compare
PP_0127 -1.6 -5.8 Thiol:disulfide interchange protein compare
PP_1198 -1.6 -2.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_1318 -1.5 -5.3 Cytochrome b compare
PP_4891 -1.5 -5.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_5217 -1.5 -11.6 Polyphosphate kinase compare
PP_4129 -1.5 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1232 -1.5 -8.7 conserved exported protein of unknown function compare
PP_0393 -1.5 -3.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0290 -1.5 -6.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4723 -1.5 -2.4 Carbamoyl-phosphate synthase large chain compare
PP_5216 -1.4 -3.0 exopolyphosphatase compare
PP_0292 -1.4 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5329 -1.4 -3.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4124 -1.4 -4.6 NADH-quinone oxidoreductase subunit G compare
PP_4724 -1.4 -1.8 Carbamoyl-phosphate synthase small chain compare
PP_5289 -1.4 -4.2 Acetylglutamate kinase compare
PP_1224 -1.3 -6.8 periplasmic subunit of the TolQRA transport system compare
PP_4098 -1.3 -2.0 UvrABC system protein C compare
PP_1088 -1.3 -8.7 Argininosuccinate synthase compare
PP_0691 -1.3 -1.5 Glutamate 5-kinase compare
PP_0339 -1.3 -3.1 Pyruvate dehydrogenase E1 component compare
PP_5320 -1.3 -7.0 two-component system DNA-binding transcriptional dual response regulator PhoB compare
PP_4126 -1.2 -2.1 NADH-quinone oxidoreductase subunit I compare
PP_4942 -1.2 -2.5 conserved protein of unknown function compare
PP_5328 -1.2 -2.9 putative phosphate transport system permease protein compare
PP_1654 -1.2 -2.6 cysteine synthase B compare
PP_0435 -1.2 -6.6 Peptidase, M23/M37 family compare
PP_4874 -1.2 -2.2 50S ribosomal protein L9 compare
PP_4994 -1.2 -3.0 conserved protein of unknown function compare
PP_4560 -1.2 -3.2 putative Ribonuclease BN compare
PP_0001 -1.2 -1.8 probable chromosome-partitioning protein compare
PP_0291 -1.2 -2.9 conserved protein of unknown function compare
PP_0888 -1.2 -3.1 Photosynthetic apparatus regulatory protein RegA compare
PP_5114 -1.2 -1.8 putative adenine methyltransferase compare
PP_1783 -1.2 -2.3 dTDP-glucose pyrophosphorylase compare
PP_5185 -1.2 -4.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4131 -1.2 -5.0 NADH-quinone oxidoreductase subunit N compare
PP_0289 -1.1 -6.4 Imidazoleglycerol-phosphate dehydratase compare
PP_4121 -1.1 -4.1 NADH-quinone oxidoreductase subunit C/D compare
PP_5321 -1.1 -7.1 two-component system sensory histidine kinase compare
PP_4993 -1.1 -4.6 Glutathione synthetase compare
PP_2720 -1.1 -2.3 conserved protein of unknown function compare
PP_0856 -1.1 -1.9 conserved lipoprotein of unknown function compare
PP_1366 -1.1 -2.1 Transcriptional regulator MvaT, P16 subunit compare
PP_5155 -1.1 -4.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4944 -1.0 -3.2 Carbamoyltransferase compare
PP_4532 -1.0 -2.2 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_0065 -1.0 -3.0 NAD-binding component of TrK potassium transporter compare
PP_0063 -1.0 -4.4 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0872 -1.0 -5.9 Peptide chain release factor 3 compare
PP_3511 -1.0 -6.7 Branched-chain-amino-acid aminotransferase compare
PP_2378 -1.0 -2.5 Fe/S biogenesis protein NfuA compare
PP_4342 -1.0 -3.4 flagellar synthesis regulator, putative ATPase compare
PP_1764 -1.0 -2.9 Phosphoglycolate phosphatase 2 compare
PP_4204 -1.0 -2.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_2145 -1.0 -2.8 beta-N-acetylglucosaminidase compare
PP_0949 -1.0 -4.2 putative ATP-binding protein UPF0042 compare
PP_4546 -1.0 -4.2 ATP-dependent helicase HrpA compare
PP_3411 -1.0 -2.8 conserved protein of unknown function compare
PP_4004 -1.0 -3.4 DNA translocase FtsK compare
PP_2371 -1.0 -3.8 Sulphite reductase hemoprotein, beta subunit compare
PP_4286 -1.0 -4.5 allantoinase compare
PP_4693 -0.9 -3.5 RNA polymerase-binding transcription factor DksA compare
PP_5705 -0.9 -2.8 protein of unknown function compare
PP_4379 -0.9 -3.8 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_1362 -0.9 -4.0 pyruvate kinase II compare
PP_4264 -0.9 -5.1 oxygen-independent coproporphyrinogen III dehydrogenase compare
PP_4722 -0.9 -4.7 Transcription elongation factor GreA compare
PP_1733 -0.9 -2.0 membrane ATPase of the MinC-MinD-MinE system compare
PP_3649 -0.9 -3.8 Transcriptional regulator, GntR family compare
PP_1985 -0.9 -4.7 3-isopropylmalate dehydratase large subunit compare
PP_0406 -0.9 -2.4 Nucleotidyltransferase family protein compare
PP_0809 -0.9 -6.1 disulfide bond formation protein B compare
PP_4678 -0.9 -7.2 Ketol-acid reductoisomerase compare
PP_2370 -0.9 -2.9 conserved protein of unknown function compare
PP_4213 -0.9 -3.1 putative dipeptidase compare
PP_5350 -0.9 -3.3 Transcriptional regulator, RpiR family compare
PP_1906 -0.9 -3.5 ribosomal large subunit pseudouridine synthase C compare
PP_2000 -0.9 -1.3 amidophosphoribosyl transferase compare
PP_0345 -0.9 -3.4 putative Heptose kinase WapP compare
PP_2144 -0.9 -3.2 Transcriptional regulator, TetR family compare
PP_2999 -0.9 -2.0 Glyoxalase family protein compare
PP_4803 -0.9 -5.6 D-alanyl-D-alanine carboxypeptidase compare
PP_1988 -0.9 -5.1 3-isopropylmalate dehydrogenase compare
PP_2088 -0.8 -2.3 RNA polymerase sigma factor SigX compare
PP_0834 -0.8 -2.3 Sec translocation complex subunit YajC compare
PP_5001 -0.8 -3.3 protease HslVU, ATPase component compare
PP_2433 -0.8 -2.7 conserved protein of unknown function compare
PP_4130 -0.8 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0593 -0.8 -1.3 putative ribosome-binding factor compare
PP_5014 -0.8 -1.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_4471 -0.8 -3.2 Magnesium transporter compare
PP_5028 -0.8 -2.8 proline iminopeptidase compare
PP_1994 -0.8 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_4726 -0.8 -2.2 Chaperone protein DnaJ compare
PP_4250 -0.8 -4.8 cytochrome c oxidase subunit I, cbb3-type compare
PP_4251 -0.8 -2.2 cytochrome c oxidase subunit, cbb3-type compare
PP_t10 -0.8 -2.1 tRNA-Pro compare
PP_5093 -0.8 -1.8 twitching motility protein compare
PP_1208 -0.8 -2.2 conserved protein of unknown function, SlyX family compare
PP_4696 -0.8 -2.9 Nitrogen regulation protein NR(I) compare
PP_0967 -0.8 -5.1 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5652 -0.8 -2.9 conserved protein of unknown function, phage origin compare
PP_4880 -0.8 -5.1 exoribonuclease R compare
PP_1664 -0.8 -2.1 phosphoribosylglycinamide formyltransferase 1 compare
PP_4253 -0.8 -2.1 cytochrome c oxidase subunit, cbb3-type compare
PP_4902 -0.8 -2.4 Oligoribonuclease compare
PP_3876 -0.7 -2.1 conserved protein of unknown function compare
PP_4009 -0.7 -3.7 ATP-dependent Clp protease adapter protein ClpS compare
PP_0405 -0.7 -4.6 conserved protein of unknown function compare
PP_2475 -0.7 -4.2 Transcriptional regulator, TetR family compare
PP_0966 -0.7 -5.1 Histidinol dehydrogenase compare
PP_5128 -0.7 -4.2 Dihydroxy-acid dehydratase compare
PP_4941 -0.7 -3.4 conserved exported protein of unknown function compare
PP_4236 -0.7 -3.8 putative Thiol:disulfide interchange protein dsbE compare
PP_0086 -0.7 -2.6 conserved protein of unknown function compare
PP_0246 -0.7 -1.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_4964 -0.7 -2.2 D-erythrose 4-phosphate dehydrogenase compare
PP_2379 -0.7 -4.0 putative cytochrome oxidase biogenesis protein compare
PP_5331 -0.7 -2.3 Long-chain acyl-CoA thioester hydrolase compare
PP_4910 -0.7 -2.5 conserved protein of unknown function compare
PP_4517 -0.7 -1.7 conserved protein of unknown function compare
PP_0804 -0.7 -4.1 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_4343 -0.7 -2.6 Flagellar biosynthesis protein FlhF compare
PP_t29 -0.7 -2.2 tRNA-Ala compare
PP_1217 -0.7 -2.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4591 -0.7 -3.6 Ribonuclease D compare
PP_1022 -0.7 -2.7 glucose 6-phosphate-1-dehydrogenase compare
PP_0805 -0.7 -4.7 Outer membrane efflux protein compare
PP_4785 -0.6 -4.0 conserved exported protein of unknown function compare
PP_0167 -0.6 -5.6 Toxin secretion ATP-binding protein compare
PP_1468 -0.6 -1.4 Tyrosine recombinase XerD compare
PP_1353 -0.6 -2.0 conserved membrane protein of unknown function compare
PP_0574 -0.6 -4.9 DNA-binding response regulator, LuxR family compare
PP_1860 -0.6 -3.4 Organic hydroperoxide resistance transcriptional regulator compare
PP_4561 -0.6 -1.0 stress response protein compare
PP_0165 -0.6 -5.6 GGDEF domain protein compare
PP_0803 -0.6 -4.0 Protein secretion ABC efflux system, membrane fusion protein compare
PP_4320 -0.6 -2.5 cytochrome c-type biogenesis protein compare
PP_2456 -0.6 -2.9 D-ribose ABC transporter - permease subunit compare
PP_3938 -0.6 -2.0 conserved protein of unknown function compare
PP_0168 -0.6 -5.7 putative surface adhesion protein compare
PP_0232 -0.6 -1.3 ATP-binding taurine transporter subunit compare
PP_0401 -0.6 -1.2 Ribosomal RNA small subunit methyltransferase A compare
PP_1187 -0.6 -3.3 sensor protein compare
PP_0166 -0.6 -5.3 HlyD family secretion protein compare
PP_5519 -0.6 -2.6 conserved protein of unknown function of phage origin compare
PP_1322 -0.6 -1.8 putative Lipoprotein compare
PP_1364 -0.6 -4.5 conserved exported protein of unknown function compare
PP_4470 -0.6 -1.6 putative transcriptional regulator (Arc domain-containing) compare
PP_3762 -0.6 -2.4 Response regulator compare
PP_0855 -0.6 -1.8 conserved protein of unknown function compare
PP_5309 -0.6 -3.8 oxidative and nitrosative stress transcriptional dual regulator compare
PP_4824 -0.6 -3.3 Sensor histidine kinase/response regulator compare
PP_4396 -0.6 -2.1 conserved protein of unknown function compare
PP_2880 -0.6 -1.7 Transcriptional regulator, TetR family compare
PP_2044 -0.6 -1.4 conserved inner membrane protein of unknown function compare
PP_5327 -0.6 -2.1 putative phosphate ABC transporter, permease subunit compare
PP_4214 -0.6 -2.5 pyoverdine biosynthesis related protein compare
PP_5051 -0.6 -2.1 conserved protein of unknown function compare
PP_3122 -0.6 -3.6 acetoacetyl CoA-transferase (subunit A) compare
PP_4365 -0.6 -2.9 Flagellar protein FliJ compare
PP_0504 -0.6 -2.9 Outer membrane protein OprG compare
PP_0346 -0.6 -3.9 putative Heptose kinase WapQ compare
PP_0653 -0.6 -1.3 conserved protein of unknown function compare
PP_1237 -0.6 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1662 -0.6 -1.4 conserved protein of unknown function compare
PP_0887 -0.6 -3.9 Sensor histidine kinase compare
PP_3999 -0.6 -3.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1986 -0.6 -1.6 3-isopropylmalate dehydratase small subunit compare
PP_2337 -0.6 -1.0 aconitate isomerase compare
PP_0893 -0.6 -1.6 ThiJ/PfpI family protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in lb experiments