Experiment set17IT026 for Pseudomonas simiae WCS417

Compare to:

Carbon source L-Ornithine 5 mM

200 most important genes:

  gene name fitness t score description  
PS417_01855 -5.1 -4.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_26740 -3.7 -11.7 homoserine acetyltransferase compare
PS417_25715 -3.7 -6.8 anthranilate phosphoribosyltransferase compare
PS417_25720 -3.6 -7.2 anthranilate synthase component II compare
PS417_26745 -3.5 -8.9 methionine biosynthesis protein MetW compare
PS417_17585 -3.4 -8.5 ornithine cyclodeaminase conserved
PS417_25725 -3.4 -14.9 anthranilate synthase component I compare
PS417_18560 -3.4 -10.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_00185 -3.3 -5.1 tryptophan synthase subunit beta compare
PS417_02415 -3.2 -6.3 phosphoserine phosphatase compare
PS417_23810 -3.2 -12.4 acetolactate synthase 3 catalytic subunit compare
PS417_23800 -3.1 -11.5 ketol-acid reductoisomerase compare
PS417_18585 -3.1 -6.0 3-isopropylmalate dehydrogenase compare
PS417_16465 -3.0 -11.1 sirohydrochlorin ferrochelatase compare
PS417_17595 -3.0 -7.0 amino acid ABC transporter permease compare
PS417_27040 -3.0 -3.9 3-phosphoglycerate dehydrogenase compare
PS417_17605 -2.9 -8.4 amino acid transporter conserved
PS417_18600 -2.9 -4.5 isopropylmalate isomerase compare
PS417_01575 -2.9 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_04415 -2.8 -10.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23995 -2.8 -1.5 preprotein translocase subunit SecG compare
PS417_26985 -2.8 -4.8 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02175 -2.8 -3.0 transcriptional regulator compare
PS417_23805 -2.8 -5.0 acetolactate synthase 3 regulatory subunit compare
PS417_02510 -2.7 -3.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_17590 -2.7 -2.8 ABC transporter substrate-binding protein compare
PS417_07575 -2.7 -6.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_23110 -2.7 -7.7 2-isopropylmalate synthase compare
PS417_00180 -2.6 -4.0 tryptophan synthase subunit alpha compare
PS417_18530 -2.6 -4.7 O-succinylhomoserine sulfhydrylase compare
PS417_01565 -2.6 -5.3 imidazole glycerol phosphate synthase compare
PS417_18595 -2.6 -4.1 3-isopropylmalate dehydratase compare
PS417_17580 -2.6 -6.6 citrulline utilization hydrolase (from data) conserved
PS417_17600 -2.6 -11.5 amino acid ABC transporter permease compare
PS417_05595 -2.5 -10.8 ornithine carbamoyltransferase compare
PS417_04420 -2.5 -8.0 histidinol dehydrogenase compare
PS417_12855 -2.4 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_12290 -2.3 -6.0 sulfite reductase compare
PS417_20125 -2.3 -5.4 phosphoribosylglycinamide formyltransferase compare
PS417_01605 -2.3 -1.6 phosphoglycerate mutase compare
PS417_07640 -2.3 -3.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_01850 -2.2 -7.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_26995 -2.2 -8.2 phosphoserine phosphatase compare
PS417_26890 -2.2 -5.7 dihydroxy-acid dehydratase compare
PS417_27435 -2.1 -8.8 polyphosphate kinase compare
PS417_20985 -2.1 -2.4 porin compare
PS417_21680 -2.0 -4.8 succinylglutamate desuccinylase compare
PS417_01560 -1.9 -3.1 imidazoleglycerol-phosphate dehydratase compare
PS417_01570 -1.9 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_27875 -1.9 -8.4 histidine kinase compare
PS417_04650 -1.9 -1.3 D-alanine--D-alanine ligase compare
PS417_21710 -1.9 -5.8 Succinylornithine transaminase (EC 2.6.1.81) (from data) conserved
PS417_20160 -1.7 -5.1 cysteine synthase compare
PS417_07560 -1.7 -2.6 universal stress protein UspA compare
PS417_25710 -1.7 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_17610 -1.7 -1.6 AsnC family transcriptional regulator compare
PS417_23900 -1.6 -8.3 poly(A) polymerase compare
PS417_27835 -1.6 -5.9 endoribonuclease compare
PS417_21430 -1.6 -2.0 3-oxoacyl-ACP synthase compare
PS417_18310 -1.6 -1.6 hypothetical protein compare
PS417_04390 -1.6 -3.2 toluene tolerance protein compare
PS417_21700 -1.5 -4.6 arginine N-succinyltransferase compare
PS417_01210 -1.5 -8.2 hypothetical protein compare
PS417_26805 -1.5 -1.3 cell division protein FtsE compare
PS417_04365 -1.5 -1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_21270 -1.4 -2.0 translation initiation factor 2 compare
PS417_06530 -1.4 -3.0 membrane protein compare
PS417_04875 -1.4 -1.5 molybdenum cofactor biosynthesis protein MoaE compare
PS417_26040 -1.4 -4.7 malate synthase compare
PS417_28070 -1.4 -6.9 phosphate ABC transporter ATP-binding protein compare
PS417_14940 -1.4 -2.1 LysR family transcriptional regulator compare
PS417_24155 -1.4 -2.0 ATP-binding protein compare
PS417_04865 -1.4 -4.2 molybdenum cofactor biosynthesis protein MoaC compare
PS417_21750 -1.4 -9.9 acetyl-CoA synthetase compare
PS417_21695 -1.3 -2.1 succinylglutamate-semialdehyde dehydrogenase compare
PS417_27315 -1.3 -1.1 hypothetical protein compare
PS417_16490 -1.3 -1.5 cell division protein FtsK compare
PS417_12310 -1.3 -5.7 methionine synthase compare
PS417_21425 -1.3 -2.1 4-amino-4-deoxychorismate lyase compare
PS417_10810 -1.2 -2.3 hypothetical protein compare
PS417_05570 -1.2 -4.0 DeoR faimly transcriptional regulator compare
PS417_02555 -1.1 -8.6 exoribonuclease R compare
PS417_19275 -1.1 -1.4 hypothetical protein compare
PS417_07165 -1.1 -5.4 dihydrodipicolinate synthase compare
PS417_04380 -1.1 -0.9 ABC transporter permease compare
PS417_03925 -1.1 -4.9 nicotinate-nucleotide pyrophosphorylase compare
PS417_24370 -1.1 -0.9 (2Fe-2S)-binding protein compare
PS417_27800 -1.1 -1.3 exodeoxyribonuclease III compare
PS417_26390 -1.1 -2.1 acyltransferase compare
PS417_28515 -1.1 -2.7 16S rRNA methyltransferase compare
PS417_28080 -1.1 -7.4 phosphate ABC transporter permease compare
PS417_01920 -1.1 -0.9 ATP-dependent protease subunit HslV compare
PS417_22175 -1.1 -1.7 amino acid transporter LysE compare
PS417_01270 -1.1 -2.0 iron ABC transporter substrate-binding protein compare
PS417_24810 -1.0 -5.6 aldehyde dehydrogenase compare
PS417_24085 -1.0 -1.9 protein RnfH compare
PS417_00370 -1.0 -1.0 hypothetical protein compare
PS417_16990 -1.0 -5.2 acyl-CoA dehydrogenase compare
PS417_26240 -1.0 -1.3 N-methylproline demethylase compare
PS417_12455 -1.0 -2.5 hydrolase compare
PS417_10405 -1.0 -0.9 filamentous hemagglutinin compare
PS417_13075 -1.0 -1.0 hypothetical protein compare
PS417_04375 -1.0 -1.5 ABC transporter ATP-binding protein compare
PS417_19125 -1.0 -2.5 LysR family transcriptional regulator compare
PS417_23210 -1.0 -1.7 serine acetyltransferase compare
PS417_12375 -1.0 -2.0 serine/threonine protein phosphatase compare
PS417_05165 -1.0 -2.2 cytosol aminopeptidase compare
PS417_27520 -0.9 -2.5 uroporphyrin-III methyltransferase compare
PS417_06895 -0.9 -2.5 DNA-binding protein compare
PS417_04220 -0.9 -1.1 4-carboxymuconolactone decarboxylase compare
PS417_06245 -0.9 -0.9 zinc metallopeptidase RseP compare
PS417_21735 -0.9 -5.2 ABC transporter for L-Arginine, permease component 2 (from data) compare
PS417_05840 -0.9 -2.9 LuxR family transcriptional regulator compare
PS417_21395 -0.9 -6.1 radical SAM protein compare
PS417_06685 -0.9 -0.8 beta-ketoadipyl CoA thiolase compare
PS417_27035 -0.9 -2.2 FAD-linked oxidase compare
PS417_01275 -0.9 -2.8 LysR family transcriptional regulator compare
PS417_07985 -0.9 -1.5 AbrB family transcriptional regulator compare
PS417_21210 -0.9 -1.0 amidotransferase compare
PS417_21915 -0.9 -1.7 LysR family transcriptional regulator compare
PS417_21740 -0.9 -3.5 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_02475 -0.9 -2.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_07170 -0.9 -2.3 hypothetical protein compare
PS417_00065 -0.9 -1.4 3-methyladenine DNA glycosylase compare
PS417_08665 -0.9 -2.2 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_09325 -0.9 -3.0 peptidase S41 compare
PS417_12515 -0.9 -2.1 lactate dehydrogenase compare
PS417_27715 -0.9 -1.3 Fe-S oxidoreductase compare
PS417_01265 -0.9 -5.1 CbbBc protein compare
PS417_08540 -0.9 -1.8 RNA helicase compare
PS417_18690 -0.9 -1.6 aromatic amino acid aminotransferase compare
PS417_22385 -0.9 -5.0 quinolinate synthase A compare
PS417_23315 -0.9 -1.1 transcriptional regulator compare
PS417_27555 -0.9 -2.1 DNA-binding protein compare
PS417_07620 -0.9 -1.6 beta-hexosaminidase compare
PS417_25975 -0.9 -3.7 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_18490 -0.9 -1.0 hypothetical protein compare
PS417_17705 -0.8 -2.5 LacI family transcriptional regulator compare
PS417_12565 -0.8 -2.2 2-dehydro-3-deoxygluconokinase compare
PS417_23950 -0.8 -1.4 polynucleotide phosphorylase/polyadenylase compare
PS417_02485 -0.8 -2.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_01290 -0.8 -0.9 ADP-ribose diphosphatase compare
PS417_08670 -0.8 -2.6 molybdopterin biosynthesis protein B compare
PS417_15710 -0.8 -1.8 nitrate reductase compare
PS417_17000 -0.8 -2.4 MerR family transcriptional regulator compare
PS417_28075 -0.8 -4.5 phosphate ABC transporter permease compare
PS417_28085 -0.8 -5.6 phosphate-binding protein compare
PS417_06645 -0.8 -4.5 RNA polymerase-associated protein RapA compare
PS417_06735 -0.8 -1.8 3-oxoadipate enol-lactonase compare
PS417_28225 -0.8 -1.2 hypothetical protein compare
PS417_01715 -0.8 -1.3 hypothetical protein compare
PS417_06455 -0.8 -2.8 Fe(II)-dependent oxygenase compare
PS417_04385 -0.8 -2.4 organic solvent ABC transporter substrate-binding protein compare
PS417_26420 -0.8 -1.0 hypothetical protein compare
PS417_06395 -0.8 -1.7 amino acid transporter compare
PS417_26685 -0.8 -1.7 hypothetical protein compare
PS417_02150 -0.8 -3.5 potassium/proton antiporter compare
PS417_01580 -0.8 -0.3 imidazole glycerol phosphate synthase compare
PS417_20025 -0.8 -1.4 alpha-ribazole phosphatase compare
PS417_22825 -0.8 -3.6 hypothetical protein compare
PS417_05100 -0.8 -1.8 RNA polymerase sigma factor compare
PS417_21725 -0.8 -1.9 amino acid transporter compare
PS417_21655 -0.8 -0.8 aspartate kinase compare
PS417_26725 -0.8 -2.1 hypothetical protein compare
PS417_07455 -0.8 -1.5 glutamine amidotransferase compare
PS417_20170 -0.7 -2.3 hypothetical protein compare
PS417_08685 -0.7 -1.4 flagellar hook-length control protein FliK compare
PS417_22570 -0.7 -0.6 H-NS histone compare
PS417_26730 -0.7 -0.7 pyrroline-5-carboxylate reductase compare
PS417_02950 -0.7 -1.2 tRNA-dihydrouridine synthase B compare
PS417_07710 -0.7 -2.7 membrane protein compare
PS417_01950 -0.7 -2.4 malate dehydrogenase compare
PS417_17125 -0.7 -2.1 transcriptional regulator compare
PS417_02975 -0.7 -1.7 3-dehydroquinate dehydratase compare
PS417_05590 -0.7 -3.5 iron ABC transporter ATP-binding protein compare
PS417_08130 -0.7 -1.2 aspartate aminotransferase compare
PS417_22450 -0.7 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_15465 -0.7 -2.1 carboxynorspermidine decarboxylase compare
PS417_15775 -0.7 -2.8 short-chain dehydrogenase compare
PS417_27745 -0.7 -3.0 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
PS417_08045 -0.7 -1.3 uracil permease compare
PS417_27300 -0.7 -0.6 cell division protein ZapA compare
PS417_23820 -0.7 -2.5 hypothetical protein compare
PS417_25290 -0.7 -1.3 hypothetical protein compare
PS417_26510 -0.7 -3.6 5,10-methylenetetrahydrofolate reductase compare
PS417_18470 -0.7 -1.6 hypothetical protein compare
PS417_12355 -0.7 -1.4 magnesium chelatase compare
PS417_19420 -0.7 -2.3 OHCU decarboxylase compare
PS417_07820 -0.7 -1.6 transposase compare
PS417_15885 -0.7 -1.4 GCN5 family acetyltransferase compare
PS417_10995 -0.7 -1.9 GntR family transcriptional regulator compare
PS417_10425 -0.7 -1.1 hypothetical protein compare
PS417_21125 -0.7 -2.9 phosphoadenosine phosphosulfate reductase compare
PS417_13455 -0.7 -1.2 alkaline proteinase inhibitor compare
PS417_06905 -0.7 -2.5 alcohol dehydrogenase compare
PS417_10320 -0.7 -1.6 hypothetical protein compare
PS417_03430 -0.7 -1.4 methyltransferase type 11 compare
PS417_06095 -0.7 -1.0 energy transducer TonB compare
PS417_13895 -0.7 -2.3 chemotaxis protein CheB compare
PS417_24935 -0.7 -0.8 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Ornithine in Pseudomonas simiae WCS417

For carbon source L-Ornithine across organisms