Experiment set17IT026 for Pseudomonas simiae WCS417

Compare to:

Carbon source L-Ornithine 5 mM

200 most detrimental genes:

  gene name fitness t score description  
PS417_21565 +1.4 8.4 flagellar basal body rod protein FlgC compare
PS417_19880 +1.4 10.1 flagellar basal body L-ring protein compare
PS417_22690 +1.4 3.4 phosphogluconate dehydratase compare
PS417_19745 +1.4 10.4 flagellar assembly protein FliO compare
PS417_19730 +1.4 5.4 flagellar biosynthesis protein FliR compare
PS417_27945 +1.3 2.7 type VI secretion protein ImpA compare
PS417_19740 +1.3 8.3 flagellar biosynthesis protein flip compare
PS417_19885 +1.3 4.6 flagellar basal body rod protein FlgG compare
PS417_19825 +1.2 11.0 ATPase AAA compare
PS417_19785 +1.2 7.0 flagellar biogenesis protein compare
PS417_19710 +1.2 9.3 flagellar biosynthesis protein FlhA compare
PS417_21585 +1.2 10.8 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_11585 +1.2 2.0 LuxR family transcriptional regulator compare
PS417_19735 +1.2 3.4 flagellar biosynthesis protein FliQ compare
PS417_19795 +1.2 8.5 flagellar assembly protein FliH compare
PS417_21555 +1.1 7.3 flagellar hook protein FlgE compare
PS417_21570 +1.1 6.0 flagellar basal body rod protein FlgB compare
PS417_19765 +1.1 8.8 flagellar hook-length control protein compare
PS417_10245 +1.1 1.9 hypothetical protein compare
PS417_15400 +1.1 2.0 hypothetical protein compare
PS417_04305 +1.1 1.5 aspartate ammonia-lyase compare
PS417_19870 +1.0 3.9 flagellar rod assembly protein FlgJ compare
PS417_15915 +1.0 2.4 hypothetical protein compare
PS417_19695 +1.0 7.3 flagellar biosynthesis sigma factor compare
PS417_19830 +1.0 4.8 flagellar assembly protein FliT compare
PS417_19790 +1.0 3.6 ATP synthase compare
PS417_02070 +1.0 1.6 membrane protein compare
PS417_19725 +1.0 7.2 flagellar biosynthesis protein FlhB compare
PS417_18570 +0.9 2.7 peptidoglycan-binding protein compare
PS417_21760 +0.9 1.7 hypothetical protein compare
PS417_14280 +0.9 2.3 hypothetical protein compare
PS417_05560 +0.9 1.6 ABC transporter compare
PS417_07865 +0.9 2.5 hypothetical protein compare
PS417_09085 +0.9 1.4 hypothetical protein compare
PS417_07700 +0.9 2.7 chromosome partitioning protein ParA compare
PS417_23580 +0.9 1.5 peptidylprolyl isomerase compare
PS417_16195 +0.8 1.3 AraC family transcriptional regulator compare
PS417_19800 +0.8 2.4 flagellar motor switch protein FliG compare
PS417_01915 +0.8 0.6 ATP-dependent protease ATP-binding subunit HslU compare
PS417_01400 +0.8 3.0 hypothetical protein compare
PS417_05160 +0.8 0.8 DNA polymerase III subunit chi compare
PS417_19865 +0.8 5.7 flagellar hook protein FlgK compare
PS417_19835 +0.8 1.9 flagellar biosynthesis protein FliS compare
PS417_12390 +0.8 2.3 hypothetical protein compare
PS417_26530 +0.8 1.8 hypothetical protein compare
PS417_13950 +0.8 1.9 LuxR family transcriptional regulator compare
PS417_15495 +0.8 2.1 FAD-dependent oxidoreductase compare
PS417_05445 +0.8 1.3 DNA mismatch repair protein MutT compare
PS417_08230 +0.8 1.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_15440 +0.8 3.0 iron ABC transporter substrate-binding protein compare
PS417_17440 +0.7 1.3 beta-lactamase compare
PS417_25645 +0.7 2.6 peptidase M23 compare
PS417_06125 +0.7 2.3 hypothetical protein compare
PS417_20610 +0.7 1.1 hypothetical protein compare
PS417_00900 +0.7 1.8 4-aminobutyrate aminotransferase compare
PS417_13305 +0.7 1.1 hypothetical protein compare
PS417_18760 +0.7 2.9 hypothetical protein compare
PS417_21630 +0.7 1.9 magnesium transporter compare
PS417_23765 +0.7 2.4 hypothetical protein compare
PS417_03385 +0.7 1.2 flavin reductase compare
PS417_23380 +0.7 1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_06025 +0.7 2.6 alpha/beta hydrolase compare
PS417_21560 +0.7 4.1 flagellar basal body rod modification protein FlgD compare
PS417_12220 +0.7 2.0 hydroxyacylglutathione hydrolase compare
PS417_05120 +0.7 2.2 RNA polymerase subunit sigma-24 compare
PS417_26815 +0.7 2.1 peptidase M16 compare
PS417_11440 +0.7 1.7 hypothetical protein compare
PS417_21595 +0.7 3.0 flagellar biosynthesis protein FlgN compare
PS417_11360 +0.7 2.9 energy transducer TonB compare
PS417_24840 +0.7 2.0 hypothetical protein compare
PS417_07940 +0.7 2.1 hypothetical protein compare
PS417_01685 +0.7 2.3 membrane protein compare
PS417_14915 +0.7 2.6 host specificity protein compare
PS417_11570 +0.7 2.0 ABC transporter permease compare
PS417_19850 +0.7 4.2 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_10220 +0.7 2.9 hypothetical protein compare
PS417_11230 +0.7 3.1 hydroxyacid dehydrogenase compare
PS417_13575 +0.7 1.3 succinylglutamate desuccinylase compare
PS417_05975 +0.7 0.7 chemotaxis protein CheW compare
PS417_11475 +0.7 2.3 membrane protein compare
PS417_19860 +0.7 5.5 flagellar hook protein FlgL compare
PS417_27180 +0.7 1.9 peroxidase compare
PS417_20725 +0.7 1.5 cbb3-type cytochrome c oxidase subunit II compare
PS417_12660 +0.6 1.1 hypothetical protein compare
PS417_19630 +0.6 2.3 LuxR family transcriptional regulator compare
PS417_27710 +0.6 4.1 AsnC family transcriptional regulator compare
PS417_24990 +0.6 2.2 exotoxin compare
PS417_13735 +0.6 1.2 hypothetical protein compare
PS417_07305 +0.6 1.9 3-beta hydroxysteroid dehydrogenase compare
PS417_22870 +0.6 1.3 lipoprotein compare
PS417_14890 +0.6 1.1 LysR family transcriptional regulator compare
PS417_18020 +0.6 1.4 hypothetical protein compare
PS417_24030 +0.6 1.2 MFS transporter compare
PS417_15435 +0.6 1.6 metallophosphatase compare
PS417_05535 +0.6 1.4 Fis family transcriptional regulator compare
PS417_05555 +0.6 2.0 amino acid ABC transporter permease compare
PS417_22260 +0.6 1.7 segregation and condensation protein B compare
PS417_26645 +0.6 1.7 chemotaxis protein compare
PS417_16720 +0.6 0.9 membrane protein compare
PS417_15705 +0.6 1.1 nitrate reductase compare
PS417_08250 +0.6 1.2 competence protein ComEA compare
PS417_04585 +0.6 1.1 hypothetical protein compare
PS417_19755 +0.6 1.6 flagellar motor switch protein FliM compare
PS417_09865 +0.6 1.3 hypothetical protein compare
PS417_04225 +0.6 1.7 conjugal transfer protein TraR compare
PS417_10985 +0.6 0.8 NADH:flavin oxidoreductase compare
PS417_23375 +0.6 1.4 cytochrome C oxidase compare
PS417_19705 +0.6 1.3 flagellar biosynthesis regulator FlhF compare
PS417_15235 +0.6 2.5 short-chain dehydrogenase compare
PS417_16945 +0.6 1.7 LuxR family transcriptional regulator compare
PS417_18010 +0.6 2.0 acid phosphatase compare
PS417_22990 +0.6 0.9 iron dicitrate transport regulator FecR compare
PS417_19840 +0.6 3.7 flagellar cap protein FliD compare
PS417_08510 +0.6 2.0 LysR family transcriptional regulator compare
PS417_13985 +0.6 3.5 dehydrogenase compare
PS417_23390 +0.6 3.7 ubiquinol oxidase subunit II compare
PS417_04080 +0.6 1.3 peptide ABC transporter substrate-binding protein compare
PS417_09470 +0.6 0.6 hypothetical protein compare
PS417_24525 +0.6 0.8 nuclease compare
PS417_01630 +0.6 1.3 hypothetical protein compare
PS417_15005 +0.6 1.2 hypothetical protein compare
PS417_14140 +0.6 1.0 membrane protein compare
PS417_22375 +0.6 0.6 cold-shock protein compare
PS417_14780 +0.6 2.9 GNAT family acetyltraansferase compare
PS417_23050 +0.5 2.1 trehalose PTS system, EII-BC components TreB (from data) compare
PS417_24500 +0.5 1.6 DEAD/DEAH box helicase compare
PS417_11785 +0.5 2.6 glutamine synthetase compare
PS417_28390 +0.5 1.7 CDP-alcohol phosphatidyltransferase compare
PS417_04905 +0.5 2.0 amino acid ABC transporter permease compare
PS417_02630 +0.5 2.1 NAD synthetase compare
PS417_04775 +0.5 2.2 short-chain dehydrogenase compare
PS417_05635 +0.5 2.2 membrane protein compare
PS417_10125 +0.5 1.8 hypothetical protein compare
PS417_24650 +0.5 0.6 membrane protein compare
PS417_06540 +0.5 0.9 membrane protein compare
PS417_14315 +0.5 1.3 2,5-dioxovalerate dehydrogenase compare
PS417_22000 +0.5 1.8 glutathione S-transferase compare
PS417_14210 +0.5 2.5 hypothetical protein compare
PS417_10040 +0.5 0.7 MFS transporter compare
PS417_00705 +0.5 0.7 MarR family transcriptional regulator compare
PS417_26550 +0.5 2.1 ABC transporter compare
PS417_01340 +0.5 1.8 agmatine deiminase compare
PS417_09545 +0.5 1.4 aldehyde-activating protein compare
PS417_20670 +0.5 2.5 glycosyl transferase family 2 compare
PS417_22325 +0.5 3.5 amino acid APC transporter compare
PS417_14235 +0.5 1.1 hypothetical protein compare
PS417_25775 +0.5 2.1 lipoprotein compare
PS417_12090 +0.5 1.5 hypothetical protein compare
PS417_00670 +0.5 1.5 RNA polymerase sigma factor compare
PS417_17795 +0.5 1.0 ABC transporter permease compare
PS417_00920 +0.5 1.4 diguanylate cyclase compare
PS417_17515 +0.5 1.9 GfdT protein compare
PS417_15820 +0.5 1.2 universal stress protein UspA compare
PS417_15695 +0.5 1.6 molybdenum cofactor biosynthesis protein A compare
PS417_15480 +0.5 1.1 ABC transporter substrate-binding protein compare
PS417_00495 +0.5 1.6 ABC transporter permease compare
PS417_23360 +0.5 0.7 hypothetical protein compare
PS417_10270 +0.5 1.7 transcriptional regulator compare
PS417_13510 +0.5 0.7 polyketide cyclase compare
PS417_19805 +0.5 1.4 flagellar M-ring protein FliF compare
PS417_21090 +0.5 2.3 hypothetical protein compare
PS417_22520 +0.5 0.8 histidine kinase compare
PS417_00830 +0.5 1.3 hypothetical protein compare
PS417_15380 +0.5 1.6 hypothetical protein compare
PS417_14245 +0.5 1.1 hypothetical protein compare
PS417_16555 +0.5 0.8 cupin compare
PS417_21055 +0.5 1.5 threonyl-tRNA synthetase compare
PS417_17200 +0.5 2.3 hypothetical protein compare
PS417_20950 +0.5 1.5 hypothetical protein compare
PS417_13965 +0.5 1.1 acetoin utilization protein compare
PS417_00175 +0.5 0.7 CigR compare
PS417_01475 +0.5 1.9 cell division protein FtsQ compare
PS417_01145 +0.5 0.7 taurine transporter ATP-binding subunit compare
PS417_16180 +0.5 1.6 MFS transporter compare
PS417_24400 +0.5 1.4 peptidase compare
PS417_26220 +0.5 1.6 Rieske (2Fe-2S) protein compare
PS417_04960 +0.5 1.2 hypothetical protein compare
PS417_01965 +0.5 0.9 fimbriae biosynthesis protein compare
PS417_18190 +0.5 2.1 IclR family transcriptional regulator compare
PS417_10890 +0.5 2.4 Deoxyribose 1-dehydrogenase, alpha subunit (from data) compare
PS417_26945 +0.5 2.3 sulfate ABC transporter ATP-binding protein compare
PS417_25130 +0.5 2.7 hypothetical protein compare
PS417_11820 +0.5 1.7 histidine kinase compare
PS417_18460 +0.5 2.0 transcriptional regulator compare
PS417_22210 +0.5 0.8 AraC family transcriptional regulator compare
PS417_07845 +0.5 1.1 transcriptional regulator compare
PS417_09505 +0.5 1.7 hypothetical protein compare
PS417_08170 +0.5 3.1 capsular biosynthesis protein compare
PS417_05155 +0.5 1.7 DNA polymerase III subunit chi compare
PS417_18355 +0.5 2.4 DNA-binding protein compare
PS417_18000 +0.5 1.3 hypothetical protein compare
PS417_20685 +0.5 1.9 CAAX protease compare
PS417_22250 +0.5 2.0 pseudouridine synthase compare
PS417_27940 +0.5 0.9 type VI secretion protein compare
PS417_11070 +0.4 1.4 rhizopine-binding protein compare
PS417_05920 +0.4 2.1 gamma-aminobutyraldehyde dehydrogenase compare
PS417_00730 +0.4 1.7 NADH:ubiquinone oxidoreductase subunit N compare
PS417_06680 +0.4 2.4 nuclease PIN compare
PS417_18410 +0.4 1.5 glutaminase compare
PS417_17350 +0.4 1.5 copper resistance protein CopD compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source L-Ornithine in Pseudomonas simiae WCS417

For carbon source L-Ornithine across organisms