Experiment set17IT025 for Pseudomonas simiae WCS417

Compare to:

Carbon source L-Ornithine 10 mM

200 most important genes:

  gene name fitness t score description  
PS417_17590 -3.8 -3.6 ABC transporter substrate-binding protein compare
PS417_00180 -3.6 -3.4 tryptophan synthase subunit alpha compare
PS417_08125 -3.2 -1.1 prephenate dehydratase compare
PS417_01575 -3.0 -6.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01855 -3.0 -4.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_23800 -2.9 -10.6 ketol-acid reductoisomerase compare
PS417_23805 -2.8 -5.2 acetolactate synthase 3 regulatory subunit compare
PS417_16465 -2.8 -10.2 sirohydrochlorin ferrochelatase compare
PS417_02415 -2.8 -5.9 phosphoserine phosphatase compare
PS417_25715 -2.7 -5.5 anthranilate phosphoribosyltransferase compare
PS417_23770 -2.6 -3.1 exodeoxyribonuclease V subunit alpha compare
PS417_18560 -2.6 -8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_04380 -2.6 -1.6 ABC transporter permease compare
PS417_25725 -2.6 -15.7 anthranilate synthase component I compare
PS417_17580 -2.5 -6.4 citrulline utilization hydrolase (from data) conserved
PS417_12290 -2.5 -7.1 sulfite reductase compare
PS417_20125 -2.5 -3.3 phosphoribosylglycinamide formyltransferase compare
PS417_17605 -2.4 -7.6 amino acid transporter conserved
PS417_21425 -2.4 -2.9 4-amino-4-deoxychorismate lyase compare
PS417_17610 -2.4 -2.7 AsnC family transcriptional regulator compare
PS417_00185 -2.4 -3.9 tryptophan synthase subunit beta compare
PS417_23810 -2.3 -11.8 acetolactate synthase 3 catalytic subunit compare
PS417_02175 -2.3 -2.2 transcriptional regulator compare
PS417_26890 -2.3 -9.0 dihydroxy-acid dehydratase compare
PS417_26740 -2.3 -7.4 homoserine acetyltransferase compare
PS417_17600 -2.3 -10.0 amino acid ABC transporter permease compare
PS417_25710 -2.3 -1.9 indole-3-glycerol-phosphate synthase compare
PS417_02510 -2.2 -11.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25720 -2.2 -7.7 anthranilate synthase component II compare
PS417_18585 -2.1 -6.5 3-isopropylmalate dehydrogenase compare
PS417_17585 -2.1 -8.6 ornithine cyclodeaminase conserved
PS417_18600 -2.1 -3.8 isopropylmalate isomerase compare
PS417_04420 -2.1 -10.2 histidinol dehydrogenase compare
PS417_27585 -2.1 -3.4 diaminopimelate epimerase compare
PS417_23110 -2.0 -8.0 2-isopropylmalate synthase compare
PS417_01565 -2.0 -4.9 imidazole glycerol phosphate synthase compare
PS417_17595 -2.0 -6.4 amino acid ABC transporter permease compare
PS417_06245 -2.0 -2.6 zinc metallopeptidase RseP compare
PS417_01580 -2.0 -2.1 imidazole glycerol phosphate synthase compare
PS417_04415 -2.0 -8.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18595 -1.9 -3.7 3-isopropylmalate dehydratase compare
PS417_01850 -1.9 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_22565 -1.9 -1.3 formyltetrahydrofolate deformylase compare
PS417_05595 -1.9 -9.9 ornithine carbamoyltransferase compare
PS417_21680 -1.9 -4.2 succinylglutamate desuccinylase compare
PS417_20985 -1.7 -2.5 porin compare
PS417_10665 -1.7 -3.2 hypothetical protein compare
PS417_26745 -1.7 -5.6 methionine biosynthesis protein MetW compare
PS417_18690 -1.7 -4.2 aromatic amino acid aminotransferase compare
PS417_18530 -1.6 -5.0 O-succinylhomoserine sulfhydrylase compare
PS417_12855 -1.6 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27435 -1.6 -5.5 polyphosphate kinase compare
PS417_21360 -1.6 -1.6 termination factor Rho compare
PS417_21430 -1.6 -2.5 3-oxoacyl-ACP synthase compare
PS417_08155 -1.6 -2.1 integration host factor subunit beta compare
PS417_01560 -1.5 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_18310 -1.5 -2.2 hypothetical protein compare
PS417_07640 -1.5 -3.0 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_27875 -1.5 -5.9 histidine kinase compare
PS417_01570 -1.4 -2.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_07575 -1.4 -4.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_21695 -1.4 -2.7 succinylglutamate-semialdehyde dehydrogenase compare
PS417_26985 -1.4 -3.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_21510 -1.4 -1.9 histidine kinase compare
PS417_04385 -1.4 -3.6 organic solvent ABC transporter substrate-binding protein compare
PS417_27040 -1.4 -2.2 3-phosphoglycerate dehydrogenase compare
PS417_02895 -1.4 -2.0 precorrin-6Y C5,15-methyltransferase compare
PS417_26995 -1.3 -6.1 phosphoserine phosphatase compare
PS417_26730 -1.3 -1.0 pyrroline-5-carboxylate reductase compare
PS417_27835 -1.2 -3.8 endoribonuclease compare
PS417_05570 -1.2 -4.3 DeoR faimly transcriptional regulator compare
PS417_02475 -1.2 -2.6 N-acetylmuramoyl-L-alanine amidase compare
PS417_23900 -1.2 -6.2 poly(A) polymerase compare
PS417_12310 -1.2 -5.6 methionine synthase compare
PS417_24155 -1.2 -1.9 ATP-binding protein compare
PS417_23950 -1.2 -1.2 polynucleotide phosphorylase/polyadenylase compare
PS417_05165 -1.2 -3.2 cytosol aminopeptidase compare
PS417_28515 -1.2 -3.9 16S rRNA methyltransferase compare
PS417_03560 -1.2 -1.4 GTP-binding protein compare
PS417_10715 -1.2 -2.7 Cro/Cl family transcriptional regulator compare
PS417_06945 -1.2 -0.9 membrane protein compare
PS417_23025 -1.2 -4.8 murein transglycosylase compare
PS417_01920 -1.1 -1.3 ATP-dependent protease subunit HslV compare
PS417_03925 -1.1 -6.1 nicotinate-nucleotide pyrophosphorylase compare
PS417_12535 -1.1 -2.0 nitrilase compare
PS417_21710 -1.1 -4.1 Succinylornithine transaminase (EC 2.6.1.81) (from data) conserved
PS417_28070 -1.1 -5.5 phosphate ABC transporter ATP-binding protein compare
PS417_11485 -1.1 -1.7 AraC family transcriptional regulator compare
PS417_06735 -1.1 -2.1 3-oxoadipate enol-lactonase compare
PS417_20825 -1.1 -2.5 drug:proton antiporter compare
PS417_00845 -1.1 -1.6 transcriptional regulator compare
PS417_21625 -1.1 -1.0 DNA-binding protein compare
PS417_01210 -1.0 -4.5 hypothetical protein compare
PS417_02980 -1.0 -1.2 chemotaxis protein compare
PS417_07565 -1.0 -2.3 hypothetical protein compare
PS417_04375 -1.0 -1.7 ABC transporter ATP-binding protein compare
PS417_13755 -1.0 -1.9 oxidoreductase compare
PS417_04585 -1.0 -1.2 hypothetical protein compare
PS417_00550 -1.0 -1.1 hypothetical protein compare
PS417_24630 -1.0 -3.0 ATP-binding protein compare
PS417_20025 -1.0 -1.7 alpha-ribazole phosphatase compare
PS417_08665 -1.0 -2.2 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_22060 -1.0 -1.0 hypothetical protein compare
PS417_21700 -0.9 -2.6 arginine N-succinyltransferase compare
PS417_08685 -0.9 -1.7 flagellar hook-length control protein FliK compare
PS417_17565 -0.9 -1.6 branched-chain amino acid aminotransferase compare
PS417_06685 -0.9 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_14980 -0.9 -1.2 universal stress protein UspA compare
PS417_20140 -0.9 -2.5 nucleoprotein/polynucleotide-associated enzyme compare
PS417_03300 -0.9 -2.2 alanine acetyltransferase compare
PS417_21750 -0.9 -6.6 acetyl-CoA synthetase compare
PS417_14940 -0.9 -1.6 LysR family transcriptional regulator compare
PS417_00045 -0.9 -1.6 glycerol acyltransferase compare
PS417_23170 -0.9 -1.7 FeS assembly protein IscX compare
PS417_04875 -0.9 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_06370 -0.9 -1.0 cold-shock protein compare
PS417_22580 -0.9 -2.2 membrane protein compare
PS417_15770 -0.9 -1.2 pyridoxine 5'-phosphate oxidase compare
PS417_26040 -0.9 -2.7 malate synthase compare
PS417_21735 -0.9 -5.8 ABC transporter for L-Arginine, permease component 2 (from data) compare
PS417_14515 -0.9 -1.5 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_23775 -0.9 -1.9 exodeoxyribonuclease V subunit beta compare
PS417_09695 -0.9 -1.9 hydrolase compare
PS417_01915 -0.9 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_17455 -0.9 -2.8 cytochrome C compare
PS417_27290 -0.8 -1.4 hypothetical protein compare
PS417_15480 -0.8 -1.2 ABC transporter substrate-binding protein compare
PS417_24805 -0.8 -4.1 Fis family transcriptional regulator compare
PS417_28080 -0.8 -6.2 phosphate ABC transporter permease compare
PS417_00465 -0.8 -2.1 hypothetical protein compare
PS417_02555 -0.8 -5.7 exoribonuclease R compare
PS417_08410 -0.8 -2.3 hypothetical protein compare
PS417_09325 -0.8 -3.3 peptidase S41 compare
PS417_09915 -0.8 -1.6 hypothetical protein compare
PS417_04500 -0.8 -1.3 hypothetical protein compare
PS417_23995 -0.8 -0.8 preprotein translocase subunit SecG compare
PS417_23095 -0.8 -0.9 exodeoxyribonuclease compare
PS417_09045 -0.8 -3.0 histidine kinase compare
PS417_15085 -0.8 -2.2 ATPase AAA compare
PS417_23670 -0.8 -2.5 Muconate cycloisomerase (EC 5.5.1.1) (from data) compare
PS417_15560 -0.8 -1.7 hypothetical protein compare
PS417_02225 -0.8 -1.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_21740 -0.8 -3.6 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_15225 -0.8 -2.0 alpha/beta hydrolase compare
PS417_06030 -0.8 -2.3 hypothetical protein compare
PS417_21395 -0.8 -4.5 radical SAM protein compare
PS417_13510 -0.8 -0.9 polyketide cyclase compare
PS417_01950 -0.8 -3.3 malate dehydrogenase compare
PS417_01710 -0.8 -2.5 histidine utilization repressor compare
PS417_16360 -0.8 -2.9 histidine kinase compare
PS417_19475 -0.8 -4.3 pseudouridine synthase compare
PS417_15095 -0.8 -1.4 hypothetical protein compare
PS417_19335 -0.8 -2.2 isochorismatase compare
PS417_18495 -0.7 -2.5 hypothetical protein compare
PS417_20160 -0.7 -1.8 cysteine synthase compare
PS417_01265 -0.7 -5.0 CbbBc protein compare
PS417_25290 -0.7 -2.0 hypothetical protein compare
PS417_21745 -0.7 -3.5 ABC transporter for L-Arginine, substrate-binding component (from data) compare
PS417_27795 -0.7 -0.5 orotate phosphoribosyltransferase compare
PS417_21380 -0.7 -2.4 GntR family transcriptional regulator compare
PS417_16715 -0.7 -1.2 DoxX family protein compare
PS417_25390 -0.7 -2.2 MFS transporter compare
PS417_16490 -0.7 -1.2 cell division protein FtsK compare
PS417_22595 -0.7 -2.7 hypothetical protein compare
PS417_02485 -0.7 -2.4 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_26510 -0.7 -3.4 5,10-methylenetetrahydrofolate reductase compare
PS417_05820 -0.7 -2.0 recombinase RecX compare
PS417_04865 -0.7 -1.9 molybdenum cofactor biosynthesis protein MoaC compare
PS417_09220 -0.7 -1.1 cupin compare
PS417_15285 -0.7 -0.9 type VI secretion protein compare
PS417_27605 -0.7 -2.8 hypothetical protein compare
PS417_12245 -0.7 -1.8 GNAT family acetyltransferase compare
PS417_22385 -0.7 -3.8 quinolinate synthase A compare
PS417_10425 -0.7 -1.3 hypothetical protein compare
PS417_14315 -0.7 -1.4 2,5-dioxovalerate dehydrogenase compare
PS417_21210 -0.7 -0.9 amidotransferase compare
PS417_23105 -0.7 -0.8 hypothetical protein compare
PS417_15075 -0.7 -3.3 NAD-glutamate dehydrogenase compare
PS417_13645 -0.7 -1.8 ABC transporter compare
PS417_12695 -0.7 -2.9 mannitol dehydrogenase compare
PS417_26335 -0.7 -1.6 BetI family transcriptional regulator compare
PS417_07165 -0.7 -4.8 dihydrodipicolinate synthase compare
PS417_04090 -0.7 -2.2 hypothetical protein compare
PS417_27930 -0.7 -2.3 type VI secretion protein compare
PS417_20785 -0.7 -2.2 transcriptional regulator compare
PS417_13855 -0.6 -0.9 acetyl-CoA acetyltransferase compare
PS417_24810 -0.6 -4.1 aldehyde dehydrogenase compare
PS417_17490 -0.6 -1.6 ABC transporter ATP-binding protein compare
PS417_16475 -0.6 -1.3 camphor resistance protein CrcB compare
PS417_24525 -0.6 -1.1 nuclease compare
PS417_10995 -0.6 -1.2 GntR family transcriptional regulator compare
PS417_08540 -0.6 -1.5 RNA helicase compare
PS417_08110 -0.6 -2.4 methylthioribose-1-phosphate isomerase compare
PS417_05865 -0.6 -1.3 hypothetical protein compare
PS417_18635 -0.6 -1.8 4-hydroxybenzoyl-CoA thioesterase compare
PS417_17650 -0.6 -1.7 proteinase compare
PS417_23535 -0.6 -2.7 glutathione peroxidase compare
PS417_25225 -0.6 -1.0 MFS transporter compare
PS417_27245 -0.6 -1.9 aminotransferase DegT compare
PS417_15465 -0.6 -1.7 carboxynorspermidine decarboxylase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Ornithine in Pseudomonas simiae WCS417

For carbon source L-Ornithine across organisms