Experiment set17IT025 for Pseudomonas simiae WCS417

Compare to:

Carbon source L-Ornithine 10 mM

200 most detrimental genes:

  gene name fitness t score description  
PS417_22520 +1.4 3.5 histidine kinase compare
PS417_22375 +1.4 1.8 cold-shock protein compare
PS417_01945 +1.4 3.6 nuclease compare
PS417_14255 +1.3 2.1 phosphate import ATP-binding protein PstB compare
PS417_21565 +1.2 6.2 flagellar basal body rod protein FlgC compare
PS417_10405 +1.2 1.8 filamentous hemagglutinin compare
PS417_21585 +1.2 9.1 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_23380 +1.2 3.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_24840 +1.1 3.1 hypothetical protein compare
PS417_21570 +1.1 6.1 flagellar basal body rod protein FlgB compare
PS417_19880 +1.1 7.5 flagellar basal body L-ring protein compare
PS417_26605 +1.1 1.1 malonate decarboxylase subunit beta compare
PS417_19730 +1.1 4.9 flagellar biosynthesis protein FliR compare
PS417_19795 +1.1 8.9 flagellar assembly protein FliH compare
PS417_20635 +1.0 1.8 ABC transporter ATP-binding protein compare
PS417_26695 +1.0 1.4 uracil phosphoribosyltransferase compare
PS417_19825 +1.0 8.1 ATPase AAA compare
PS417_19735 +1.0 3.8 flagellar biosynthesis protein FliQ compare
PS417_10245 +1.0 2.1 hypothetical protein compare
PS417_19765 +1.0 7.1 flagellar hook-length control protein compare
PS417_08245 +1.0 1.4 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_19790 +1.0 3.2 ATP synthase compare
PS417_08220 +1.0 1.1 epimerase compare
PS417_19785 +0.9 4.5 flagellar biogenesis protein compare
PS417_24460 +0.9 1.1 hypothetical protein compare
PS417_19745 +0.9 7.2 flagellar assembly protein FliO compare
PS417_07845 +0.9 1.2 transcriptional regulator compare
PS417_21555 +0.9 7.0 flagellar hook protein FlgE compare
PS417_19885 +0.9 3.7 flagellar basal body rod protein FlgG compare
PS417_08510 +0.9 1.4 LysR family transcriptional regulator compare
PS417_20115 +0.9 1.7 hypothetical protein compare
PS417_27940 +0.9 1.1 type VI secretion protein compare
PS417_20310 +0.9 3.0 hypothetical protein compare
PS417_08225 +0.9 3.2 acetolactate synthase compare
PS417_01965 +0.9 1.1 fimbriae biosynthesis protein compare
PS417_19725 +0.9 4.4 flagellar biosynthesis protein FlhB compare
PS417_19695 +0.9 6.6 flagellar biosynthesis sigma factor compare
PS417_16555 +0.9 2.0 cupin compare
PS417_19710 +0.9 6.0 flagellar biosynthesis protein FlhA compare
PS417_01145 +0.9 1.3 taurine transporter ATP-binding subunit compare
PS417_17645 +0.8 1.1 RND transporter compare
PS417_08195 +0.8 5.7 hypothetical protein compare
PS417_08230 +0.8 1.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_00705 +0.8 1.0 MarR family transcriptional regulator compare
PS417_22780 +0.8 2.2 XRE family transcriptional regulator compare
PS417_27865 +0.8 1.9 LysR family transcriptional regulator compare
PS417_01095 +0.8 1.3 amino acid ABC transporter ATP-binding protein compare
PS417_19870 +0.8 2.6 flagellar rod assembly protein FlgJ compare
PS417_10220 +0.8 3.8 hypothetical protein compare
PS417_11585 +0.8 2.3 LuxR family transcriptional regulator compare
PS417_08190 +0.8 6.1 membrane protein compare
PS417_01630 +0.8 1.3 hypothetical protein compare
PS417_05445 +0.8 1.4 DNA mismatch repair protein MutT compare
PS417_22450 +0.8 1.4 ATP-dependent DNA helicase RuvA compare
PS417_16180 +0.8 2.5 MFS transporter compare
PS417_20610 +0.8 1.0 hypothetical protein compare
PS417_19800 +0.8 3.2 flagellar motor switch protein FliG compare
PS417_27180 +0.8 1.5 peroxidase compare
PS417_11820 +0.8 2.0 histidine kinase compare
PS417_04225 +0.8 2.7 conjugal transfer protein TraR compare
PS417_22895 +0.8 5.7 tyrosine recombinase XerD compare
PS417_06730 +0.8 1.1 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_20650 +0.8 5.0 hypothetical protein compare
PS417_19850 +0.7 5.0 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_04080 +0.7 2.1 peptide ABC transporter substrate-binding protein compare
PS417_13735 +0.7 1.4 hypothetical protein compare
PS417_06150 +0.7 2.0 SAM-dependent methlyltransferase compare
PS417_19740 +0.7 2.8 flagellar biosynthesis protein flip compare
PS417_14210 +0.7 2.7 hypothetical protein compare
PS417_19830 +0.7 4.0 flagellar assembly protein FliT compare
PS417_10480 +0.7 1.4 glutathione S-transferase compare
PS417_11785 +0.7 2.7 glutamine synthetase compare
PS417_19705 +0.7 1.5 flagellar biosynthesis regulator FlhF compare
PS417_12375 +0.7 2.2 serine/threonine protein phosphatase compare
PS417_06330 +0.7 3.1 S-(hydroxymethyl)glutathione dehydrogenase compare
PS417_10185 +0.7 1.8 hypothetical protein compare
PS417_05635 +0.7 3.3 membrane protein compare
PS417_27595 +0.7 2.0 recombinase XerC compare
PS417_19805 +0.7 3.5 flagellar M-ring protein FliF compare
PS417_00495 +0.7 2.5 ABC transporter permease compare
PS417_26530 +0.7 1.2 hypothetical protein compare
PS417_23765 +0.7 2.0 hypothetical protein compare
PS417_12765 +0.7 3.4 oxidoreductase compare
PS417_19285 +0.7 1.2 ankyrin compare
PS417_00175 +0.7 1.1 CigR compare
PS417_13090 +0.7 1.5 dienelactone hydrolase compare
PS417_14280 +0.7 1.4 hypothetical protein compare
PS417_27710 +0.6 4.7 AsnC family transcriptional regulator compare
PS417_00455 +0.6 1.6 hypothetical protein compare
PS417_22990 +0.6 1.0 iron dicitrate transport regulator FecR compare
PS417_28230 +0.6 2.1 transcriptional regulator compare
PS417_06680 +0.6 3.9 nuclease PIN compare
PS417_02805 +0.6 0.9 urease subunit gamma compare
PS417_02705 +0.6 1.0 urease accessory protein UreF compare
PS417_01750 +0.6 1.1 histidine ammonia-lyase compare
PS417_17350 +0.6 2.4 copper resistance protein CopD compare
PS417_19840 +0.6 4.5 flagellar cap protein FliD compare
PS417_15495 +0.6 1.7 FAD-dependent oxidoreductase compare
PS417_12280 +0.6 1.7 MerR family transcriptional regulator compare
PS417_13625 +0.6 2.6 cytochrome B561 compare
PS417_10435 +0.6 1.7 serine/threonine protein kinase compare
PS417_13305 +0.6 0.8 hypothetical protein compare
PS417_17795 +0.6 1.1 ABC transporter permease compare
PS417_19835 +0.6 1.2 flagellar biosynthesis protein FliS compare
PS417_05235 +0.6 0.7 peptidase inhibitor I42 compare
PS417_19860 +0.6 4.7 flagellar hook protein FlgL compare
PS417_25275 +0.6 2.0 hypothetical protein compare
PS417_06500 +0.6 0.8 hypothetical protein compare
PS417_19760 +0.6 2.6 flagellar basal body protein FliL compare
PS417_23545 +0.6 1.2 gamma-glutamyl kinase compare
PS417_06375 +0.6 0.6 deoxycytidine triphosphate deaminase compare
PS417_09085 +0.6 0.9 hypothetical protein compare
PS417_19865 +0.6 4.1 flagellar hook protein FlgK compare
PS417_10855 +0.6 2.3 chemotaxis protein CheY compare
PS417_20365 +0.6 2.6 Cro/Cl family transcriptional regulator compare
PS417_20670 +0.6 2.7 glycosyl transferase family 2 compare
PS417_14995 +0.6 2.0 serine/threonine protein kinase compare
PS417_27425 +0.6 3.3 exopolyphosphatase compare
PS417_15440 +0.6 2.3 iron ABC transporter substrate-binding protein compare
PS417_22350 +0.6 1.1 Fis family transcriptional regulator compare
PS417_14905 +0.6 1.6 C4-dicarboxylate ABC transporter compare
PS417_00870 +0.6 1.7 hypothetical protein compare
PS417_15535 +0.6 1.9 oxidoreductase compare
PS417_27500 +0.6 1.9 peptidylprolyl isomerase compare
PS417_06095 +0.6 0.9 energy transducer TonB compare
PS417_18160 +0.6 1.6 YeeE/YedE compare
PS417_22620 +0.6 2.6 pyruvate kinase compare
PS417_13850 +0.5 1.7 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
PS417_13055 +0.5 1.2 aminotransferase compare
PS417_00650 +0.5 0.7 LysR family transcriptional regulator compare
PS417_22325 +0.5 3.3 amino acid APC transporter compare
PS417_26850 +0.5 0.6 twin-arginine translocation pathway signal protein compare
PS417_05120 +0.5 1.3 RNA polymerase subunit sigma-24 compare
PS417_21035 +0.5 2.8 multidrug transporter compare
PS417_16775 +0.5 1.2 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_07940 +0.5 1.2 hypothetical protein compare
PS417_25120 +0.5 3.0 capsular biosynthesis protein compare
PS417_25645 +0.5 2.7 peptidase M23 compare
PS417_15505 +0.5 1.6 glutaminase compare
PS417_17635 +0.5 2.1 hemolysin secretion protein D compare
PS417_27300 +0.5 0.7 cell division protein ZapA compare
PS417_00660 +0.5 1.6 DSBA oxidoreductase compare
PS417_09465 +0.5 2.2 FMN reductase compare
PS417_18740 +0.5 1.3 acetyltransferase compare
PS417_17830 +0.5 1.5 4-hydroxyphenylacetate isomerase compare
PS417_25695 +0.5 1.5 peroxiredoxin compare
PS417_09910 +0.5 1.5 gifsy-1 prophage protein compare
PS417_21560 +0.5 2.3 flagellar basal body rod modification protein FlgD compare
PS417_06835 +0.5 1.7 phospholipase compare
PS417_04305 +0.5 0.7 aspartate ammonia-lyase compare
PS417_15805 +0.5 1.1 transporter compare
PS417_23370 +0.5 2.1 protoheme IX farnesyltransferase compare
PS417_16085 +0.5 2.0 LysR family transcriptional regulator compare
PS417_08420 +0.5 2.1 lipoprotein compare
PS417_01685 +0.5 2.1 membrane protein compare
PS417_01585 +0.5 2.4 amino acid ABC transporter substrate-binding protein compare
PS417_20660 +0.5 3.2 hypothetical protein compare
PS417_13950 +0.5 1.4 LuxR family transcriptional regulator compare
PS417_10210 +0.5 1.8 hypothetical protein compare
PS417_03465 +0.5 0.9 type III secretion protein compare
PS417_26755 +0.5 1.7 nucleoside-triphosphate diphosphatase compare
PS417_24990 +0.5 2.9 exotoxin compare
PS417_21090 +0.5 1.3 hypothetical protein compare
PS417_01400 +0.5 1.4 hypothetical protein compare
PS417_27335 +0.5 3.0 flagellar basal body protein FliL compare
PS417_22550 +0.5 1.9 ATP-binding protein compare
PS417_09420 +0.5 1.0 LysR family transcriptional regulator compare
PS417_26550 +0.5 1.7 ABC transporter compare
PS417_07870 +0.5 1.5 hypothetical protein compare
PS417_08150 +0.5 1.3 hypothetical protein compare
PS417_13050 +0.5 1.3 N-acetylglucosamine-6-sulfatase compare
PS417_18435 +0.5 1.6 hypothetical protein compare
PS417_21595 +0.5 1.7 flagellar biosynthesis protein FlgN compare
PS417_17440 +0.5 1.1 beta-lactamase compare
PS417_19820 +0.5 2.3 histidine kinase compare
PS417_22690 +0.5 2.1 phosphogluconate dehydratase compare
PS417_26465 +0.5 1.5 hypothetical protein compare
PS417_26640 +0.5 1.5 hypothetical protein compare
PS417_18355 +0.5 2.8 DNA-binding protein compare
PS417_14565 +0.5 2.1 chemotaxis protein compare
PS417_18060 +0.5 1.4 general secretion pathway protein GspJ compare
PS417_22015 +0.5 1.1 hypothetical protein compare
PS417_23015 +0.5 1.3 NGG1p interacting factor 3 protein, NIF3 compare
PS417_11880 +0.5 0.9 oxidoreductase compare
PS417_12275 +0.5 2.0 2,4-dienoyl-CoA reductase compare
PS417_21100 +0.5 2.8 alpha-L-glutamate ligase compare
PS417_18570 +0.5 1.7 peptidoglycan-binding protein compare
PS417_16395 +0.5 1.3 arsenate reductase compare
PS417_23385 +0.5 2.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_12985 +0.5 1.5 DNA-binding protein compare
PS417_12200 +0.5 2.9 microcin ABC transporter permease compare
PS417_02385 +0.5 0.8 esterase compare
PS417_02855 +0.5 1.5 histidinol phosphatase compare
PS417_27945 +0.5 0.5 type VI secretion protein ImpA compare
PS417_14755 +0.5 0.7 UV damage repair endonuclease UvdE compare
PS417_27395 +0.5 1.6 amino acid ABC transporter permease compare
PS417_09835 +0.5 1.9 hypothetical protein compare
PS417_18955 +0.5 2.1 FAD-dependent oxidoreductase compare
PS417_28425 +0.5 1.8 lysine transporter LysE compare
PS417_20950 +0.5 1.0 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Ornithine in Pseudomonas simiae WCS417

For carbon source L-Ornithine across organisms