Experiment set17IT024 for Pseudomonas simiae WCS417

Compare to:

Carbon source D-Mannitol 2.5 mM

200 most important genes:

  gene name fitness t score description  
PS417_01855 -5.1 -4.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_18310 -4.9 -3.0 hypothetical protein compare
PS417_23805 -4.4 -6.0 acetolactate synthase 3 regulatory subunit compare
PS417_00185 -4.3 -5.1 tryptophan synthase subunit beta compare
PS417_01575 -4.3 -7.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_22690 -4.1 -3.9 phosphogluconate dehydratase compare
PS417_25725 -3.7 -14.2 anthranilate synthase component I compare
PS417_12710 -3.7 -6.2 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) conserved
PS417_18560 -3.6 -10.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02510 -3.6 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25710 -3.5 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_27040 -3.5 -4.1 3-phosphoglycerate dehydrogenase compare
PS417_18600 -3.4 -3.6 isopropylmalate isomerase compare
PS417_18585 -3.4 -5.0 3-isopropylmalate dehydrogenase compare
PS417_25720 -3.4 -5.1 anthranilate synthase component II compare
PS417_12690 -3.3 -4.6 xylulose kinase conserved
PS417_27795 -3.3 -1.2 orotate phosphoribosyltransferase compare
PS417_04415 -3.3 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23800 -3.3 -14.5 ketol-acid reductoisomerase compare
PS417_01580 -3.3 -1.4 imidazole glycerol phosphate synthase compare
PS417_26745 -3.2 -6.8 methionine biosynthesis protein MetW compare
PS417_23545 -3.2 -3.8 gamma-glutamyl kinase compare
PS417_00180 -3.2 -3.7 tryptophan synthase subunit alpha compare
PS417_18530 -3.0 -4.5 O-succinylhomoserine sulfhydrylase compare
PS417_25715 -3.0 -5.6 anthranilate phosphoribosyltransferase compare
PS417_08125 -3.0 -1.1 prephenate dehydratase compare
PS417_23810 -2.9 -10.2 acetolactate synthase 3 catalytic subunit compare
PS417_02415 -2.8 -6.3 phosphoserine phosphatase compare
PS417_12695 -2.8 -4.2 mannitol dehydrogenase compare
PS417_04420 -2.8 -8.0 histidinol dehydrogenase compare
PS417_26740 -2.8 -10.0 homoserine acetyltransferase compare
PS417_12715 -2.8 -9.3 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) conserved
PS417_26890 -2.8 -5.0 dihydroxy-acid dehydratase compare
PS417_16465 -2.7 -9.7 sirohydrochlorin ferrochelatase compare
PS417_12705 -2.7 -7.2 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) conserved
PS417_02005 -2.7 -9.6 glutamate synthase compare
PS417_20985 -2.7 -1.8 porin compare
PS417_26730 -2.6 -1.3 pyrroline-5-carboxylate reductase compare
PS417_01565 -2.6 -4.3 imidazole glycerol phosphate synthase compare
PS417_24745 -2.6 -3.3 gamma-glutamyl phosphate reductase compare
PS417_23110 -2.6 -6.4 2-isopropylmalate synthase compare
PS417_05595 -2.6 -8.1 ornithine carbamoyltransferase compare
PS417_02000 -2.5 -12.2 glutamate synthase compare
PS417_12725 -2.5 -4.2 AraC family transcriptional regulator conserved
PS417_18595 -2.4 -3.3 3-isopropylmalate dehydratase compare
PS417_06375 -2.3 -1.2 deoxycytidine triphosphate deaminase compare
PS417_01915 -2.2 -0.8 ATP-dependent protease ATP-binding subunit HslU compare
PS417_01560 -2.2 -3.0 imidazoleglycerol-phosphate dehydratase compare
PS417_20855 -2.1 -1.8 hypothetical protein compare
PS417_23950 -2.1 -2.5 polynucleotide phosphorylase/polyadenylase compare
PS417_12290 -2.1 -6.6 sulfite reductase compare
PS417_24155 -2.1 -2.0 ATP-binding protein compare
PS417_23995 -2.0 -1.3 preprotein translocase subunit SecG compare
PS417_12855 -2.0 -3.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26995 -2.0 -7.3 phosphoserine phosphatase compare
PS417_12700 -2.0 -4.1 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) conserved
PS417_04410 -2.0 -2.7 hypothetical protein compare
PS417_01570 -1.9 -1.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_26985 -1.9 -4.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_07170 -1.8 -3.4 hypothetical protein compare
PS417_27155 -1.8 -2.0 aliphatic sulfonates transport ATP-binding subunit compare
PS417_01850 -1.7 -4.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_21700 -1.7 -4.0 arginine N-succinyltransferase compare
PS417_08155 -1.7 -2.2 integration host factor subunit beta compare
PS417_14980 -1.6 -1.5 universal stress protein UspA compare
PS417_19095 -1.6 -2.2 hypothetical protein compare
PS417_01920 -1.6 -1.4 ATP-dependent protease subunit HslV compare
PS417_27835 -1.5 -5.3 endoribonuclease compare
PS417_16490 -1.5 -1.8 cell division protein FtsK compare
PS417_27135 -1.5 -1.1 glutamine synthetase compare
PS417_22210 -1.4 -2.0 AraC family transcriptional regulator compare
PS417_24585 -1.4 -6.7 AMP nucleosidase compare
PS417_01715 -1.4 -1.6 hypothetical protein compare
PS417_28220 -1.4 -1.8 LysR family transcriptional regulator compare
PS417_23770 -1.4 -1.7 exodeoxyribonuclease V subunit alpha compare
PS417_03560 -1.4 -1.3 GTP-binding protein compare
PS417_27870 -1.4 -2.4 ATP-dependent DNA helicase RecG compare
PS417_04650 -1.4 -1.2 D-alanine--D-alanine ligase compare
PS417_27035 -1.4 -4.1 FAD-linked oxidase compare
PS417_27875 -1.4 -6.2 histidine kinase compare
PS417_20635 -1.3 -1.2 ABC transporter ATP-binding protein compare
PS417_10015 -1.3 -1.2 hypothetical protein compare
PS417_06685 -1.3 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_02225 -1.3 -1.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_19605 -1.3 -1.2 hypothetical protein compare
PS417_03925 -1.3 -4.7 nicotinate-nucleotide pyrophosphorylase compare
PS417_27195 -1.3 -1.4 N-acetylglutamate synthase compare
PS417_13510 -1.2 -1.1 polyketide cyclase compare
PS417_06730 -1.2 -1.4 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_17565 -1.2 -3.0 branched-chain amino acid aminotransferase compare
PS417_20785 -1.2 -3.6 transcriptional regulator compare
PS417_07710 -1.2 -3.7 membrane protein compare
PS417_27300 -1.2 -0.9 cell division protein ZapA compare
PS417_20160 -1.2 -3.2 cysteine synthase compare
PS417_15875 -1.2 -1.6 LuxR family transcriptional regulator compare
PS417_15885 -1.2 -1.7 GCN5 family acetyltransferase compare
PS417_03455 -1.2 -1.4 type III secretion protein compare
PS417_15095 -1.1 -2.1 hypothetical protein compare
PS417_28265 -1.1 -2.0 pyridoxamine kinase compare
PS417_03300 -1.1 -2.3 alanine acetyltransferase compare
PS417_27435 -1.1 -4.2 polyphosphate kinase compare
PS417_17925 -1.1 -1.9 acyl-CoA dehydrogenase compare
PS417_04865 -1.1 -2.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_15090 -1.1 -2.3 hypothetical protein compare
PS417_13445 -1.1 -2.0 D-aminopeptidase compare
PS417_23025 -1.1 -4.9 murein transglycosylase compare
PS417_04380 -1.1 -0.8 ABC transporter permease compare
PS417_02805 -1.1 -1.1 urease subunit gamma compare
PS417_07870 -1.1 -2.0 hypothetical protein compare
PS417_04375 -1.1 -1.7 ABC transporter ATP-binding protein compare
PS417_17035 -1.1 -1.2 Cro/Cl family transcriptional regulator compare
PS417_05570 -1.1 -4.5 DeoR faimly transcriptional regulator compare
PS417_27605 -1.0 -3.4 hypothetical protein compare
PS417_21750 -1.0 -8.0 acetyl-CoA synthetase compare
PS417_02950 -1.0 -1.7 tRNA-dihydrouridine synthase B compare
PS417_22450 -1.0 -1.1 ATP-dependent DNA helicase RuvA compare
PS417_08130 -1.0 -2.0 aspartate aminotransferase compare
PS417_02280 -1.0 -1.4 GlcNAc-PI de-N-acetylase compare
PS417_12310 -1.0 -4.7 methionine synthase compare
PS417_11770 -1.0 -1.9 pyruvate dehydrogenase compare
PS417_25905 -1.0 -2.9 AsnC family transcriptional regulator compare
PS417_11810 -1.0 -1.0 oxidoreductase compare
PS417_04860 -1.0 -3.9 ATPase compare
PS417_20125 -1.0 -2.4 phosphoribosylglycinamide formyltransferase compare
PS417_24615 -1.0 -1.2 hypothetical protein compare
PS417_22385 -1.0 -5.2 quinolinate synthase A compare
PS417_26645 -1.0 -2.5 chemotaxis protein compare
PS417_09325 -1.0 -3.2 peptidase S41 compare
PS417_25975 -1.0 -4.0 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_07560 -1.0 -1.3 universal stress protein UspA compare
PS417_26770 -1.0 -2.0 tRNA (guanine-N7)-methyltransferase compare
PS417_17830 -1.0 -1.6 4-hydroxyphenylacetate isomerase compare
PS417_02475 -1.0 -2.3 N-acetylmuramoyl-L-alanine amidase compare
PS417_08185 -0.9 -2.1 glycosyl transferase compare
PS417_12565 -0.9 -2.6 2-dehydro-3-deoxygluconokinase compare
PS417_09915 -0.9 -1.6 hypothetical protein compare
PS417_17835 -0.9 -1.8 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
PS417_23375 -0.9 -1.5 cytochrome C oxidase compare
PS417_26240 -0.9 -1.2 N-methylproline demethylase compare
PS417_16990 -0.9 -3.4 acyl-CoA dehydrogenase compare
PS417_07165 -0.9 -3.7 dihydrodipicolinate synthase compare
PS417_16885 -0.9 -2.2 hypothetical protein compare
PS417_07575 -0.9 -2.8 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_22565 -0.9 -0.7 formyltetrahydrofolate deformylase compare
PS417_12455 -0.9 -2.7 hydrolase compare
PS417_22875 -0.9 -1.6 hypothetical protein compare
PS417_04180 -0.9 -1.9 GntR family transcriptional regulator compare
PS417_16715 -0.9 -1.3 DoxX family protein compare
PS417_21705 -0.9 -2.4 arginine N-succinyltransferase compare
PS417_09245 -0.9 -0.9 recombinase RdgC compare
PS417_19335 -0.9 -1.2 isochorismatase compare
PS417_06675 -0.9 -1.7 ATP-dependent helicase compare
PS417_22445 -0.9 -2.2 ATP-dependent DNA helicase RuvB compare
PS417_10320 -0.9 -2.1 hypothetical protein compare
PS417_06075 -0.9 -1.1 hypothetical protein compare
PS417_07115 -0.9 -5.0 L-aspartate oxidase compare
PS417_21630 -0.9 -1.5 magnesium transporter compare
PS417_17000 -0.9 -1.9 MerR family transcriptional regulator compare
PS417_17855 -0.9 -2.0 major facilitator transporter compare
PS417_15745 -0.9 -1.7 lipid carrier protein compare
PS417_06530 -0.9 -1.6 membrane protein compare
PS417_16665 -0.8 -1.3 hypothetical protein compare
PS417_17735 -0.8 -2.0 LacI family transcriptional regulator compare
PS417_13620 -0.8 -1.3 thermostable hemolysin compare
PS417_13300 -0.8 -1.6 short-chain dehydrogenase compare
PS417_07195 -0.8 -2.4 hypothetical protein compare
PS417_15640 -0.8 -1.9 DNA methylase compare
PS417_13870 -0.8 -1.5 hypothetical protein compare
PS417_21680 -0.8 -1.5 succinylglutamate desuccinylase compare
PS417_21780 -0.8 -2.8 argininosuccinate lyase compare
PS417_02675 -0.8 -2.8 ABC transporter ATP-binding protein compare
PS417_12910 -0.8 -2.7 alanine racemase compare
PS417_06030 -0.8 -2.0 hypothetical protein compare
PS417_02160 -0.8 -1.0 hypothetical protein compare
PS417_09235 -0.8 -0.7 molecular chaperone compare
PS417_13140 -0.8 -0.7 oxidoreductase compare
PS417_04055 -0.8 -2.8 peptide transporter compare
PS417_00045 -0.8 -1.4 glycerol acyltransferase compare
PS417_14075 -0.8 -1.3 hypothetical protein compare
PS417_17125 -0.8 -3.0 transcriptional regulator compare
PS417_10720 -0.8 -3.5 chemotaxis protein CheY compare
PS417_13710 -0.8 -2.1 hypothetical protein compare
PS417_10710 -0.8 -1.7 GNAT family acetyltransferase compare
PS417_14185 -0.8 -1.9 transcriptional regulator compare
PS417_23775 -0.8 -1.0 exodeoxyribonuclease V subunit beta compare
PS417_11175 -0.8 -1.8 AraC family transcriptional regulator compare
PS417_26155 -0.8 -2.1 hypothetical protein compare
PS417_08670 -0.8 -2.3 molybdopterin biosynthesis protein B compare
PS417_21510 -0.8 -1.2 histidine kinase compare
PS417_04875 -0.8 -1.1 molybdenum cofactor biosynthesis protein MoaE compare
PS417_19065 -0.8 -0.7 monooxygenase compare
PS417_10715 -0.8 -1.1 Cro/Cl family transcriptional regulator compare
PS417_26685 -0.8 -1.3 hypothetical protein compare
PS417_00345 -0.8 -1.4 copper-binding protein compare
PS417_11375 -0.8 -2.2 hypothetical protein compare
PS417_15085 -0.8 -2.7 ATPase AAA compare
PS417_08545 -0.8 -1.1 aromatic ring-opening dioxygenase LigB compare
PS417_01290 -0.7 -1.1 ADP-ribose diphosphatase compare
PS417_17215 -0.7 -1.5 peptidylprolyl isomerase compare
PS417_08665 -0.7 -3.0 molybdopterin-guanine dinucleotide biosynthesis protein A compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Mannitol in Pseudomonas simiae WCS417

For carbon source D-Mannitol across organisms