Experiment set17IT023 for Pseudomonas simiae WCS417

Compare to:

Carbon source D-Mannitol 5 mM

200 most important genes:

  gene name fitness t score description  
PS417_18600 -5.8 -4.4 isopropylmalate isomerase compare
PS417_23545 -5.4 -3.6 gamma-glutamyl kinase compare
PS417_01855 -5.1 -4.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_12700 -5.1 -4.4 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) conserved
PS417_08155 -5.1 -3.0 integration host factor subunit beta compare
PS417_12695 -5.0 -7.6 mannitol dehydrogenase compare
PS417_12710 -4.9 -5.2 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) conserved
PS417_18595 -4.9 -5.5 3-isopropylmalate dehydratase compare
PS417_01850 -4.6 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_12725 -4.5 -5.3 AraC family transcriptional regulator conserved
PS417_25725 -4.5 -13.9 anthranilate synthase component I compare
PS417_00185 -4.4 -4.3 tryptophan synthase subunit beta compare
PS417_23995 -4.3 -1.5 preprotein translocase subunit SecG compare
PS417_26740 -4.0 -8.4 homoserine acetyltransferase compare
PS417_18560 -3.9 -10.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_06375 -3.9 -1.4 deoxycytidine triphosphate deaminase compare
PS417_23810 -3.9 -14.3 acetolactate synthase 3 catalytic subunit compare
PS417_27040 -3.9 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_26530 -3.8 -1.9 hypothetical protein compare
PS417_18530 -3.8 -7.0 O-succinylhomoserine sulfhydrylase compare
PS417_01575 -3.8 -7.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_12715 -3.7 -9.6 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) conserved
PS417_12705 -3.7 -9.1 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) conserved
PS417_23800 -3.7 -10.5 ketol-acid reductoisomerase compare
PS417_02415 -3.7 -7.2 phosphoserine phosphatase compare
PS417_26745 -3.7 -9.4 methionine biosynthesis protein MetW compare
PS417_24745 -3.6 -4.9 gamma-glutamyl phosphate reductase compare
PS417_05595 -3.6 -8.7 ornithine carbamoyltransferase compare
PS417_12290 -3.6 -9.3 sulfite reductase compare
PS417_25710 -3.4 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_25720 -3.4 -5.7 anthranilate synthase component II compare
PS417_18585 -3.4 -7.2 3-isopropylmalate dehydrogenase compare
PS417_12690 -3.3 -4.7 xylulose kinase conserved
PS417_23805 -3.3 -5.7 acetolactate synthase 3 regulatory subunit compare
PS417_27195 -3.3 -1.6 N-acetylglutamate synthase compare
PS417_16465 -3.2 -7.0 sirohydrochlorin ferrochelatase compare
PS417_01580 -3.2 -1.3 imidazole glycerol phosphate synthase compare
PS417_01565 -3.2 -4.8 imidazole glycerol phosphate synthase compare
PS417_00180 -3.2 -3.6 tryptophan synthase subunit alpha compare
PS417_02000 -3.1 -13.9 glutamate synthase compare
PS417_08125 -3.1 -1.1 prephenate dehydratase compare
PS417_02005 -3.1 -9.2 glutamate synthase compare
PS417_01570 -3.0 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_20985 -2.8 -1.9 porin compare
PS417_12855 -2.7 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04420 -2.7 -7.5 histidinol dehydrogenase compare
PS417_26890 -2.7 -7.3 dihydroxy-acid dehydratase compare
PS417_04415 -2.7 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23110 -2.7 -5.2 2-isopropylmalate synthase compare
PS417_24155 -2.6 -1.8 ATP-binding protein compare
PS417_26730 -2.6 -1.3 pyrroline-5-carboxylate reductase compare
PS417_04650 -2.5 -1.2 D-alanine--D-alanine ligase compare
PS417_22690 -2.5 -5.2 phosphogluconate dehydratase compare
PS417_04380 -2.4 -1.5 ABC transporter permease compare
PS417_02510 -2.4 -6.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_21430 -2.4 -2.8 3-oxoacyl-ACP synthase compare
PS417_20125 -2.4 -4.3 phosphoribosylglycinamide formyltransferase compare
PS417_20160 -2.3 -3.9 cysteine synthase compare
PS417_25715 -2.2 -5.8 anthranilate phosphoribosyltransferase compare
PS417_07565 -2.1 -3.8 hypothetical protein compare
PS417_03925 -2.1 -5.8 nicotinate-nucleotide pyrophosphorylase compare
PS417_13445 -2.1 -2.9 D-aminopeptidase compare
PS417_26995 -2.0 -5.9 phosphoserine phosphatase compare
PS417_23950 -1.9 -1.8 polynucleotide phosphorylase/polyadenylase compare
PS417_06245 -1.9 -2.2 zinc metallopeptidase RseP compare
PS417_27795 -1.8 -0.9 orotate phosphoribosyltransferase compare
PS417_19095 -1.7 -2.5 hypothetical protein compare
PS417_14755 -1.7 -2.4 UV damage repair endonuclease UvdE compare
PS417_02070 -1.7 -1.3 membrane protein compare
PS417_07575 -1.7 -4.7 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_27835 -1.7 -6.0 endoribonuclease compare
PS417_27595 -1.7 -3.5 recombinase XerC compare
PS417_28220 -1.6 -2.8 LysR family transcriptional regulator compare
PS417_22570 -1.6 -0.9 H-NS histone compare
PS417_05975 -1.6 -0.9 chemotaxis protein CheW compare
PS417_23770 -1.5 -2.4 exodeoxyribonuclease V subunit alpha compare
PS417_13510 -1.5 -1.3 polyketide cyclase compare
PS417_20635 -1.5 -1.3 ABC transporter ATP-binding protein compare
PS417_07115 -1.4 -7.5 L-aspartate oxidase compare
PS417_26695 -1.4 -1.6 uracil phosphoribosyltransferase compare
PS417_24705 -1.4 -3.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_20855 -1.4 -1.5 hypothetical protein compare
PS417_13075 -1.3 -1.5 hypothetical protein compare
PS417_04410 -1.3 -1.7 hypothetical protein compare
PS417_07620 -1.3 -2.1 beta-hexosaminidase compare
PS417_01560 -1.3 -1.5 imidazoleglycerol-phosphate dehydratase compare
PS417_07170 -1.3 -2.6 hypothetical protein compare
PS417_24585 -1.3 -7.3 AMP nucleosidase compare
PS417_08130 -1.3 -2.5 aspartate aminotransferase compare
PS417_04595 -1.3 -2.4 cell division protein MraZ compare
PS417_27875 -1.3 -4.7 histidine kinase compare
PS417_00220 -1.3 -2.0 hypothetical protein compare
PS417_11175 -1.3 -2.6 AraC family transcriptional regulator compare
PS417_22385 -1.3 -6.3 quinolinate synthase A compare
PS417_18105 -1.2 -1.5 iron-dicitrate transporter substrate-binding subunit compare
PS417_09210 -1.2 -1.2 TetR family transcriptional regulator compare
PS417_23475 -1.2 -1.5 hypothetical protein compare
PS417_05570 -1.2 -4.1 DeoR faimly transcriptional regulator compare
PS417_06600 -1.2 -1.0 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_27435 -1.2 -4.3 polyphosphate kinase compare
PS417_08685 -1.2 -1.5 flagellar hook-length control protein FliK compare
PS417_16275 -1.1 -2.9 hypothetical protein compare
PS417_26985 -1.1 -3.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_00045 -1.1 -1.8 glycerol acyltransferase compare
PS417_15285 -1.1 -1.1 type VI secretion protein compare
PS417_02805 -1.1 -1.2 urease subunit gamma compare
PS417_22445 -1.1 -2.8 ATP-dependent DNA helicase RuvB compare
PS417_08670 -1.1 -3.0 molybdopterin biosynthesis protein B compare
PS417_09915 -1.1 -1.8 hypothetical protein compare
PS417_22450 -1.1 -1.2 ATP-dependent DNA helicase RuvA compare
PS417_15085 -1.0 -2.4 ATPase AAA compare
PS417_15885 -1.0 -1.3 GCN5 family acetyltransferase compare
PS417_00995 -1.0 -1.6 alpha/beta hydrolase compare
PS417_01375 -1.0 -2.3 hypothetical protein compare
PS417_01920 -1.0 -1.2 ATP-dependent protease subunit HslV compare
PS417_06835 -1.0 -1.6 phospholipase compare
PS417_27605 -1.0 -3.6 hypothetical protein compare
PS417_05100 -1.0 -1.8 RNA polymerase sigma factor compare
PS417_04965 -1.0 -1.4 hypothetical protein compare
PS417_12310 -1.0 -4.2 methionine synthase compare
PS417_05165 -1.0 -1.4 cytosol aminopeptidase compare
PS417_10995 -1.0 -2.5 GntR family transcriptional regulator compare
PS417_28170 -1.0 -2.9 transcriptional regulator compare
PS417_26990 -1.0 -0.9 RNA pyrophosphohydrolase compare
PS417_18690 -0.9 -2.8 aromatic amino acid aminotransferase compare
PS417_15095 -0.9 -1.8 hypothetical protein compare
PS417_16885 -0.9 -2.1 hypothetical protein compare
PS417_10245 -0.9 -1.0 hypothetical protein compare
PS417_17930 -0.9 -2.3 aldehyde dehydrogenase compare
PS417_14555 -0.9 -3.0 AsnC family transcriptional regulator compare
PS417_23405 -0.9 -2.8 transcriptional regulator compare
PS417_05535 -0.9 -1.5 Fis family transcriptional regulator compare
PS417_23095 -0.9 -1.0 exodeoxyribonuclease compare
PS417_26305 -0.9 -2.1 AraC family transcriptional regulator compare
PS417_26175 -0.9 -1.0 sarcosine oxidase subunit gamma compare
PS417_25765 -0.9 -1.5 transcriptional regulator compare
PS417_28515 -0.9 -2.5 16S rRNA methyltransferase compare
PS417_25905 -0.9 -2.3 AsnC family transcriptional regulator compare
PS417_07165 -0.9 -2.3 dihydrodipicolinate synthase compare
PS417_12910 -0.9 -1.7 alanine racemase compare
PS417_10695 -0.9 -3.2 decarboxylase compare
PS417_01710 -0.9 -4.4 histidine utilization repressor compare
PS417_15105 -0.9 -3.1 membrane protein compare
PS417_00475 -0.8 -2.5 membrane protein compare
PS417_08410 -0.8 -2.0 hypothetical protein compare
PS417_18590 -0.8 -1.8 SAM-dependent methyltransferase compare
PS417_18495 -0.8 -1.9 hypothetical protein compare
PS417_15110 -0.8 -5.0 protein BatD compare
PS417_15540 -0.8 -1.2 NUDIX hydrolase compare
PS417_27305 -0.8 -3.2 5-formyltetrahydrofolate cyclo-ligase compare
PS417_27610 -0.8 -2.1 hypothetical protein compare
PS417_24580 -0.8 -1.9 pseudouridine synthase compare
PS417_22695 -0.8 -4.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_15450 -0.8 -2.7 ABC transporter permease compare
PS417_20705 -0.8 -2.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_21680 -0.8 -2.0 succinylglutamate desuccinylase compare
PS417_03705 -0.8 -2.2 2-alkenal reductase compare
PS417_05455 -0.8 -3.2 XRE family transcriptional regulator compare
PS417_21750 -0.8 -6.0 acetyl-CoA synthetase compare
PS417_10400 -0.8 -2.2 membrane protein compare
PS417_01425 -0.8 -2.1 AraC family transcriptional regulator compare
PS417_21705 -0.8 -2.4 arginine N-succinyltransferase compare
PS417_20520 -0.8 -1.9 3-phosphoglycerate kinase compare
PS417_04385 -0.8 -2.4 organic solvent ABC transporter substrate-binding protein compare
PS417_10305 -0.8 -1.7 hypothetical protein compare
PS417_07595 -0.8 -2.5 PasA protein compare
PS417_26850 -0.8 -0.6 twin-arginine translocation pathway signal protein compare
PS417_10320 -0.8 -1.0 hypothetical protein compare
PS417_10480 -0.8 -1.4 glutathione S-transferase compare
PS417_01605 -0.8 -0.9 phosphoglycerate mutase compare
PS417_09325 -0.8 -3.2 peptidase S41 compare
PS417_17780 -0.8 -0.8 Ais protein compare
PS417_02160 -0.8 -0.9 hypothetical protein compare
PS417_04270 -0.8 -4.0 ribonuclease G compare
PS417_06850 -0.7 -1.0 methanol dehydrogenase compare
PS417_24810 -0.7 -4.0 aldehyde dehydrogenase compare
PS417_01915 -0.7 -0.3 ATP-dependent protease ATP-binding subunit HslU compare
PS417_06505 -0.7 -2.3 membrane protein compare
PS417_23025 -0.7 -3.2 murein transglycosylase compare
PS417_18350 -0.7 -3.3 hypothetical protein compare
PS417_24620 -0.7 -1.7 hypothetical protein compare
PS417_21510 -0.7 -1.1 histidine kinase compare
PS417_20055 -0.7 -1.9 cob(II)yrinic acid a,c-diamide reductase compare
PS417_11965 -0.7 -1.2 GCN5 family acetyltransferase compare
PS417_27815 -0.7 -1.2 hypothetical protein compare
PS417_16370 -0.7 -3.2 chemotaxis protein CheY compare
PS417_20825 -0.7 -2.0 drug:proton antiporter compare
PS417_06530 -0.7 -1.7 membrane protein compare
PS417_04730 -0.7 -3.5 bifunctional glyoxylate/hydroxypyruvate reductase B compare
PS417_26240 -0.7 -1.3 N-methylproline demethylase compare
PS417_13885 -0.7 -1.2 chemotaxis protein CheY compare
PS417_13755 -0.7 -1.9 oxidoreductase compare
PS417_00075 -0.7 -1.5 hypothetical protein compare
PS417_25790 -0.7 -2.9 aminoglycoside phosphotransferase compare
PS417_12930 -0.7 -1.7 LpxA family transferase compare
PS417_03515 -0.7 -1.3 type III secretion protein compare
PS417_02680 -0.7 -1.8 hypothetical protein compare
PS417_16870 -0.7 -1.8 short-chain dehydrogenase compare
PS417_28020 -0.7 -1.7 chorismate--pyruvate lyase compare
PS417_17000 -0.7 -1.6 MerR family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Mannitol in Pseudomonas simiae WCS417

For carbon source D-Mannitol across organisms