Experiment set17IT022 for Pseudomonas simiae WCS417

Compare to:

Carbon source D-Mannitol 10 mM

200 most important genes:

  gene name fitness t score description  
PS417_23545 -5.4 -3.7 gamma-glutamyl kinase compare
PS417_18585 -4.8 -6.5 3-isopropylmalate dehydrogenase compare
PS417_23800 -4.6 -13.0 ketol-acid reductoisomerase compare
PS417_23805 -4.5 -6.1 acetolactate synthase 3 regulatory subunit compare
PS417_26740 -4.3 -12.9 homoserine acetyltransferase compare
PS417_01570 -4.3 -2.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_23995 -4.3 -1.6 preprotein translocase subunit SecG compare
PS417_20125 -4.0 -5.8 phosphoribosylglycinamide formyltransferase compare
PS417_12700 -3.9 -5.0 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) conserved
PS417_01565 -3.8 -5.1 imidazole glycerol phosphate synthase compare
PS417_25725 -3.8 -13.1 anthranilate synthase component I compare
PS417_01855 -3.8 -4.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_04415 -3.8 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18560 -3.7 -8.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23810 -3.7 -11.4 acetolactate synthase 3 catalytic subunit compare
PS417_01575 -3.7 -6.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_16465 -3.6 -10.6 sirohydrochlorin ferrochelatase compare
PS417_25720 -3.6 -7.1 anthranilate synthase component II compare
PS417_26745 -3.5 -7.0 methionine biosynthesis protein MetW compare
PS417_18595 -3.5 -4.2 3-isopropylmalate dehydratase compare
PS417_24745 -3.5 -4.8 gamma-glutamyl phosphate reductase compare
PS417_18600 -3.5 -3.1 isopropylmalate isomerase compare
PS417_02000 -3.5 -15.3 glutamate synthase compare
PS417_12695 -3.4 -7.0 mannitol dehydrogenase compare
PS417_12690 -3.4 -6.3 xylulose kinase conserved
PS417_12705 -3.4 -9.1 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) conserved
PS417_12710 -3.4 -5.3 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) conserved
PS417_00185 -3.4 -4.1 tryptophan synthase subunit beta compare
PS417_25710 -3.4 -1.7 indole-3-glycerol-phosphate synthase compare
PS417_27040 -3.4 -4.0 3-phosphoglycerate dehydrogenase compare
PS417_12715 -3.3 -12.3 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) conserved
PS417_05595 -3.3 -11.3 ornithine carbamoyltransferase compare
PS417_02510 -3.3 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27195 -3.2 -1.6 N-acetylglutamate synthase compare
PS417_02415 -3.2 -4.9 phosphoserine phosphatase compare
PS417_02005 -3.2 -10.7 glutamate synthase compare
PS417_25715 -3.0 -4.5 anthranilate phosphoribosyltransferase compare
PS417_12855 -2.9 -5.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_12290 -2.8 -7.0 sulfite reductase compare
PS417_28220 -2.7 -1.9 LysR family transcriptional regulator compare
PS417_22690 -2.7 -5.1 phosphogluconate dehydratase compare
PS417_23110 -2.7 -6.7 2-isopropylmalate synthase compare
PS417_04420 -2.7 -10.6 histidinol dehydrogenase compare
PS417_12725 -2.7 -2.6 AraC family transcriptional regulator conserved
PS417_23950 -2.7 -2.0 polynucleotide phosphorylase/polyadenylase compare
PS417_01580 -2.6 -1.7 imidazole glycerol phosphate synthase compare
PS417_26890 -2.6 -5.0 dihydroxy-acid dehydratase compare
PS417_18530 -2.6 -3.3 O-succinylhomoserine sulfhydrylase compare
PS417_26730 -2.5 -1.3 pyrroline-5-carboxylate reductase compare
PS417_26995 -2.3 -8.4 phosphoserine phosphatase compare
PS417_01850 -2.3 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_27835 -2.2 -6.9 endoribonuclease compare
PS417_01605 -2.2 -1.5 phosphoglycerate mutase compare
PS417_06600 -2.2 -1.4 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_02280 -2.1 -2.7 GlcNAc-PI de-N-acetylase compare
PS417_23770 -2.0 -2.6 exodeoxyribonuclease V subunit alpha compare
PS417_27875 -2.0 -11.4 histidine kinase compare
PS417_20160 -1.9 -4.4 cysteine synthase compare
PS417_04650 -1.9 -1.3 D-alanine--D-alanine ligase compare
PS417_24155 -1.9 -2.2 ATP-binding protein compare
PS417_00180 -1.9 -3.0 tryptophan synthase subunit alpha compare
PS417_07560 -1.8 -1.3 universal stress protein UspA compare
PS417_11485 -1.8 -2.1 AraC family transcriptional regulator compare
PS417_26985 -1.8 -5.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_07170 -1.7 -2.8 hypothetical protein compare
PS417_21480 -1.7 -1.6 23S rRNA pseudouridylate synthase compare
PS417_04380 -1.6 -1.3 ABC transporter permease compare
PS417_08125 -1.6 -0.8 prephenate dehydratase compare
PS417_21700 -1.5 -3.9 arginine N-succinyltransferase compare
PS417_21705 -1.5 -4.0 arginine N-succinyltransferase compare
PS417_18310 -1.5 -1.9 hypothetical protein compare
PS417_10405 -1.5 -1.1 filamentous hemagglutinin compare
PS417_08220 -1.5 -0.9 epimerase compare
PS417_24585 -1.5 -6.6 AMP nucleosidase compare
PS417_18690 -1.4 -2.9 aromatic amino acid aminotransferase compare
PS417_27135 -1.4 -1.0 glutamine synthetase compare
PS417_08155 -1.4 -1.5 integration host factor subunit beta compare
PS417_26335 -1.3 -2.3 BetI family transcriptional regulator compare
PS417_22385 -1.3 -6.6 quinolinate synthase A compare
PS417_04390 -1.3 -2.4 toluene tolerance protein compare
PS417_15100 -1.3 -1.7 BatB protein compare
PS417_03925 -1.3 -4.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_01995 -1.3 -2.0 hypothetical protein compare
PS417_20785 -1.3 -3.5 transcriptional regulator compare
PS417_22565 -1.3 -1.0 formyltetrahydrofolate deformylase compare
PS417_08540 -1.3 -2.3 RNA helicase compare
PS417_27585 -1.2 -2.0 diaminopimelate epimerase compare
PS417_17215 -1.2 -2.1 peptidylprolyl isomerase compare
PS417_07575 -1.2 -4.6 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_23775 -1.2 -2.2 exodeoxyribonuclease V subunit beta compare
PS417_00370 -1.2 -1.0 hypothetical protein compare
PS417_20985 -1.1 -1.8 porin compare
PS417_01560 -1.1 -2.0 imidazoleglycerol-phosphate dehydratase compare
PS417_03260 -1.1 -1.4 5S ribosomal RNA compare
PS417_01030 -1.1 -1.4 glutamine ABC transporter substrate-binding protein compare
PS417_27155 -1.1 -1.6 aliphatic sulfonates transport ATP-binding subunit compare
PS417_13640 -1.1 -1.5 ribose ABC transporter permease compare
PS417_09470 -1.1 -1.2 hypothetical protein compare
PS417_17980 -1.1 -1.7 ABC transporter permease compare
PS417_13205 -1.1 -1.7 isochorismate-pyruvate lyase compare
PS417_20725 -1.1 -1.3 cbb3-type cytochrome c oxidase subunit II compare
PS417_26390 -1.1 -1.9 acyltransferase compare
PS417_11400 -1.0 -1.0 phosphoglycerate mutase compare
PS417_15285 -1.0 -1.1 type VI secretion protein compare
PS417_28515 -1.0 -2.7 16S rRNA methyltransferase compare
PS417_16990 -1.0 -4.5 acyl-CoA dehydrogenase compare
PS417_28070 -1.0 -5.0 phosphate ABC transporter ATP-binding protein compare
PS417_13710 -1.0 -1.8 hypothetical protein compare
PS417_23615 -1.0 -1.9 sulfate transporter compare
PS417_07115 -1.0 -5.6 L-aspartate oxidase compare
PS417_10425 -1.0 -1.6 hypothetical protein compare
PS417_12455 -1.0 -2.1 hydrolase compare
PS417_07565 -1.0 -2.0 hypothetical protein compare
PS417_00085 -1.0 -1.6 16S rRNA methyltransferase compare
PS417_03560 -1.0 -1.1 GTP-binding protein compare
PS417_14105 -1.0 -2.0 6-O-methylguanine DNA methyltransferase compare
PS417_16490 -1.0 -1.3 cell division protein FtsK compare
PS417_18590 -0.9 -2.5 SAM-dependent methyltransferase compare
PS417_27605 -0.9 -3.5 hypothetical protein compare
PS417_03145 -0.9 -2.3 acetyl-CoA acetyltransferase compare
PS417_15915 -0.9 -1.2 hypothetical protein compare
PS417_20825 -0.9 -1.9 drug:proton antiporter compare
PS417_26695 -0.9 -1.2 uracil phosphoribosyltransferase compare
PS417_12310 -0.9 -4.0 methionine synthase compare
PS417_04385 -0.9 -2.6 organic solvent ABC transporter substrate-binding protein compare
PS417_22375 -0.9 -0.7 cold-shock protein compare
PS417_05570 -0.9 -3.1 DeoR faimly transcriptional regulator compare
PS417_08090 -0.9 -0.8 3-oxoacyl-ACP reductase compare
PS417_04180 -0.9 -2.9 GntR family transcriptional regulator compare
PS417_24615 -0.9 -1.1 hypothetical protein compare
PS417_19305 -0.9 -2.5 acireductone dioxygenase compare
PS417_23170 -0.9 -1.2 FeS assembly protein IscX compare
PS417_13990 -0.9 -1.7 LysR family transcriptional regulator compare
PS417_14515 -0.9 -1.4 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_23900 -0.9 -5.1 poly(A) polymerase compare
PS417_01920 -0.9 -1.1 ATP-dependent protease subunit HslV compare
PS417_06075 -0.9 -1.3 hypothetical protein compare
PS417_22695 -0.9 -4.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_20025 -0.9 -1.4 alpha-ribazole phosphatase compare
PS417_05065 -0.9 -1.6 hypothetical protein compare
PS417_06530 -0.9 -1.2 membrane protein compare
PS417_28170 -0.9 -2.6 transcriptional regulator compare
PS417_26240 -0.8 -1.8 N-methylproline demethylase compare
PS417_08130 -0.8 -1.8 aspartate aminotransferase compare
PS417_23135 -0.8 -1.5 GTP-binding protein compare
PS417_04270 -0.8 -4.9 ribonuclease G compare
PS417_08685 -0.8 -1.5 flagellar hook-length control protein FliK compare
PS417_26260 -0.8 -1.3 hypothetical protein compare
PS417_04410 -0.8 -1.7 hypothetical protein compare
PS417_22620 -0.8 -2.5 pyruvate kinase compare
PS417_15935 -0.8 -2.2 Rrf2 family transcriptional regulator compare
PS417_01270 -0.8 -1.3 iron ABC transporter substrate-binding protein compare
PS417_04375 -0.8 -1.4 ABC transporter ATP-binding protein compare
PS417_02425 -0.8 -3.4 thiosulfate sulfurtransferase compare
PS417_21630 -0.8 -1.1 magnesium transporter compare
PS417_23715 -0.8 -1.4 cupin compare
PS417_02980 -0.8 -1.1 chemotaxis protein compare
PS417_01875 -0.8 -1.5 polyhydroxyalkanoic acid system protein compare
PS417_21210 -0.8 -1.1 amidotransferase compare
PS417_14940 -0.8 -1.3 LysR family transcriptional regulator compare
PS417_18545 -0.8 -2.1 cell division protein compare
PS417_18395 -0.8 -1.4 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_05235 -0.8 -1.3 peptidase inhibitor I42 compare
PS417_08365 -0.8 -0.8 hypothetical protein compare
PS417_04220 -0.8 -0.9 4-carboxymuconolactone decarboxylase compare
PS417_02160 -0.8 -0.9 hypothetical protein compare
PS417_14075 -0.8 -1.5 hypothetical protein compare
PS417_21125 -0.8 -2.9 phosphoadenosine phosphosulfate reductase compare
PS417_08045 -0.8 -1.0 uracil permease compare
PS417_27640 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_06780 -0.8 -1.7 TetR family transcriptional regulator compare
PS417_26685 -0.8 -2.0 hypothetical protein compare
PS417_13010 -0.7 -1.5 alpha/beta hydrolase compare
PS417_19225 -0.7 -3.2 FAD-dependent cmnm(5)s(2)U34 oxidoreductase compare
PS417_06030 -0.7 -1.8 hypothetical protein compare
PS417_12355 -0.7 -0.9 magnesium chelatase compare
PS417_02475 -0.7 -1.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_17755 -0.7 -1.8 hypothetical protein compare
PS417_17375 -0.7 -1.6 C4-dicarboxylate ABC transporter compare
PS417_10010 -0.7 -1.7 Replication protein P compare
PS417_26085 -0.7 -2.1 peptidase compare
PS417_06710 -0.7 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_01405 -0.7 -1.5 sugar transporter compare
PS417_00550 -0.7 -0.8 hypothetical protein compare
PS417_22950 -0.7 -1.8 preQ0 transporter compare
PS417_22570 -0.7 -0.5 H-NS histone compare
PS417_12910 -0.7 -1.8 alanine racemase compare
PS417_16510 -0.7 -1.9 Clp protease ClpX compare
PS417_17240 -0.7 -2.0 trigger factor compare
PS417_03785 -0.7 -1.1 pilus assembly protein PilV compare
PS417_01280 -0.7 -1.6 peptidoglycan-binding protein LysM compare
PS417_27515 -0.7 -2.6 heme biosynthesis protein HemY compare
PS417_07695 -0.7 -1.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_02575 -0.7 -1.4 membrane protein compare
PS417_11415 -0.7 -1.6 hypothetical protein compare
PS417_03240 -0.7 -2.8 LysR family transcriptional regulator compare
PS417_23025 -0.7 -3.4 murein transglycosylase compare
PS417_07140 -0.7 -1.7 peptidase M48 compare
PS417_24125 -0.7 -1.8 hypothetical protein compare
PS417_10665 -0.7 -1.7 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Mannitol in Pseudomonas simiae WCS417

For carbon source D-Mannitol across organisms