Experiment set17IT019 for Pseudomonas simiae WCS417

Compare to:

Carbon source L-Ornithine 5 mM

200 most important genes:

  gene name fitness t score description  
PS417_01565 -4.0 -8.7 imidazole glycerol phosphate synthase compare
PS417_01560 -4.0 -2.7 imidazoleglycerol-phosphate dehydratase compare
PS417_01575 -3.9 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_02175 -3.6 -4.3 transcriptional regulator compare
PS417_26740 -3.4 -7.3 homoserine acetyltransferase compare
PS417_07640 -3.3 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_17580 -3.3 -5.0 citrulline utilization hydrolase (from data) conserved
PS417_01570 -3.2 -2.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_27795 -3.2 -1.2 orotate phosphoribosyltransferase compare
PS417_18585 -3.2 -6.9 3-isopropylmalate dehydrogenase compare
PS417_26745 -3.2 -5.6 methionine biosynthesis protein MetW compare
PS417_18595 -3.1 -4.4 3-isopropylmalate dehydratase compare
PS417_18600 -3.1 -3.2 isopropylmalate isomerase compare
PS417_25725 -3.1 -14.3 anthranilate synthase component I compare
PS417_08125 -3.1 -1.1 prephenate dehydratase compare
PS417_23800 -3.0 -11.0 ketol-acid reductoisomerase compare
PS417_01855 -3.0 -4.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_25720 -2.9 -8.2 anthranilate synthase component II compare
PS417_04420 -2.9 -9.8 histidinol dehydrogenase compare
PS417_18560 -2.9 -10.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_23110 -2.9 -9.6 2-isopropylmalate synthase compare
PS417_23805 -2.8 -6.8 acetolactate synthase 3 regulatory subunit compare
PS417_17585 -2.8 -7.3 ornithine cyclodeaminase conserved
PS417_20985 -2.8 -1.9 porin compare
PS417_18530 -2.7 -5.4 O-succinylhomoserine sulfhydrylase compare
PS417_25710 -2.7 -2.0 indole-3-glycerol-phosphate synthase compare
PS417_23810 -2.6 -8.8 acetolactate synthase 3 catalytic subunit compare
PS417_16465 -2.6 -7.9 sirohydrochlorin ferrochelatase compare
PS417_02415 -2.6 -4.3 phosphoserine phosphatase compare
PS417_26890 -2.5 -7.0 dihydroxy-acid dehydratase compare
PS417_17605 -2.5 -7.9 amino acid transporter conserved
PS417_26605 -2.5 -1.3 malonate decarboxylase subunit beta compare
PS417_17600 -2.5 -11.7 amino acid ABC transporter permease compare
PS417_26985 -2.5 -5.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_00180 -2.5 -3.0 tryptophan synthase subunit alpha compare
PS417_27040 -2.5 -2.0 3-phosphoglycerate dehydrogenase compare
PS417_05595 -2.5 -9.7 ornithine carbamoyltransferase compare
PS417_27435 -2.4 -8.1 polyphosphate kinase compare
PS417_04415 -2.4 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_17595 -2.4 -4.5 amino acid ABC transporter permease compare
PS417_25715 -2.3 -4.7 anthranilate phosphoribosyltransferase compare
PS417_02510 -2.3 -6.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_01850 -2.2 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23995 -2.2 -1.4 preprotein translocase subunit SecG compare
PS417_06530 -2.1 -3.6 membrane protein compare
PS417_26995 -2.0 -6.9 phosphoserine phosphatase compare
PS417_14980 -2.0 -1.9 universal stress protein UspA compare
PS417_04365 -1.9 -1.8 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_00900 -1.9 -2.4 4-aminobutyrate aminotransferase compare
PS417_23770 -1.9 -2.7 exodeoxyribonuclease V subunit alpha compare
PS417_21430 -1.8 -2.3 3-oxoacyl-ACP synthase compare
PS417_01580 -1.8 -1.3 imidazole glycerol phosphate synthase compare
PS417_21695 -1.8 -3.9 succinylglutamate-semialdehyde dehydrogenase compare
PS417_12290 -1.8 -5.2 sulfite reductase compare
PS417_20125 -1.7 -3.2 phosphoribosylglycinamide formyltransferase compare
PS417_00185 -1.6 -2.8 tryptophan synthase subunit beta compare
PS417_02225 -1.6 -2.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_23900 -1.6 -9.1 poly(A) polymerase compare
PS417_12910 -1.6 -3.1 alanine racemase compare
PS417_06600 -1.5 -1.2 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_00175 -1.5 -1.4 CigR compare
PS417_17590 -1.5 -1.7 ABC transporter substrate-binding protein compare
PS417_08540 -1.5 -2.7 RNA helicase compare
PS417_07870 -1.4 -2.6 hypothetical protein compare
PS417_21680 -1.4 -3.5 succinylglutamate desuccinylase compare
PS417_08670 -1.4 -3.8 molybdopterin biosynthesis protein B compare
PS417_07575 -1.4 -4.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_12855 -1.3 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_21750 -1.3 -9.6 acetyl-CoA synthetase compare
PS417_19335 -1.3 -3.5 isochorismatase compare
PS417_02895 -1.3 -2.1 precorrin-6Y C5,15-methyltransferase compare
PS417_02555 -1.3 -7.9 exoribonuclease R compare
PS417_12310 -1.3 -5.9 methionine synthase compare
PS417_12035 -1.3 -3.2 dihydroxyacetone kinase compare
PS417_04875 -1.2 -1.6 molybdenum cofactor biosynthesis protein MoaE compare
PS417_01210 -1.2 -4.7 hypothetical protein compare
PS417_27835 -1.2 -3.7 endoribonuclease compare
PS417_09470 -1.2 -1.3 hypothetical protein compare
PS417_27815 -1.2 -1.7 hypothetical protein compare
PS417_28070 -1.2 -5.3 phosphate ABC transporter ATP-binding protein compare
PS417_26805 -1.2 -1.2 cell division protein FtsE compare
PS417_03560 -1.2 -1.8 GTP-binding protein compare
PS417_08155 -1.1 -1.4 integration host factor subunit beta compare
PS417_27875 -1.1 -6.2 histidine kinase compare
PS417_08130 -1.1 -2.0 aspartate aminotransferase compare
PS417_28080 -1.1 -8.1 phosphate ABC transporter permease compare
PS417_08685 -1.1 -1.9 flagellar hook-length control protein FliK compare
PS417_20160 -1.1 -3.2 cysteine synthase compare
PS417_03925 -1.1 -4.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_01920 -1.0 -1.2 ATP-dependent protease subunit HslV compare
PS417_26040 -1.0 -2.9 malate synthase compare
PS417_04595 -1.0 -2.2 cell division protein MraZ compare
PS417_05365 -1.0 -1.1 FAD-binding protein compare
PS417_18310 -1.0 -1.4 hypothetical protein compare
PS417_01605 -1.0 -1.0 phosphoglycerate mutase compare
PS417_21700 -1.0 -2.4 arginine N-succinyltransferase compare
PS417_26990 -0.9 -0.9 RNA pyrophosphohydrolase compare
PS417_15480 -0.9 -1.8 ABC transporter substrate-binding protein compare
PS417_01290 -0.9 -1.5 ADP-ribose diphosphatase compare
PS417_08410 -0.9 -2.2 hypothetical protein compare
PS417_16990 -0.9 -4.9 acyl-CoA dehydrogenase compare
PS417_22445 -0.9 -2.6 ATP-dependent DNA helicase RuvB compare
PS417_23160 -0.9 -2.2 50S rRNA methyltransferase compare
PS417_18690 -0.9 -3.0 aromatic amino acid aminotransferase compare
PS417_11175 -0.9 -1.8 AraC family transcriptional regulator compare
PS417_04385 -0.9 -2.5 organic solvent ABC transporter substrate-binding protein compare
PS417_24370 -0.9 -0.8 (2Fe-2S)-binding protein compare
PS417_01265 -0.9 -5.4 CbbBc protein compare
PS417_24895 -0.9 -1.2 hypothetical protein compare
PS417_21425 -0.9 -1.7 4-amino-4-deoxychorismate lyase compare
PS417_04865 -0.9 -2.3 molybdenum cofactor biosynthesis protein MoaC compare
PS417_15200 -0.9 -2.0 protein activator of alkane oxidation PraB compare
PS417_20025 -0.9 -1.3 alpha-ribazole phosphatase compare
PS417_01275 -0.9 -3.6 LysR family transcriptional regulator compare
PS417_26175 -0.9 -0.8 sarcosine oxidase subunit gamma compare
PS417_24155 -0.9 -1.5 ATP-binding protein compare
PS417_21745 -0.9 -3.9 ABC transporter for L-Arginine, substrate-binding component (from data) compare
PS417_05840 -0.9 -2.8 LuxR family transcriptional regulator compare
PS417_23360 -0.8 -0.9 hypothetical protein compare
PS417_15085 -0.8 -2.7 ATPase AAA compare
PS417_16490 -0.8 -1.2 cell division protein FtsK compare
PS417_17735 -0.8 -2.3 LacI family transcriptional regulator compare
PS417_26755 -0.8 -1.2 nucleoside-triphosphate diphosphatase compare
PS417_01950 -0.8 -3.4 malate dehydrogenase compare
PS417_04390 -0.8 -2.0 toluene tolerance protein compare
PS417_01710 -0.8 -3.3 histidine utilization repressor compare
PS417_28085 -0.8 -5.1 phosphate-binding protein compare
PS417_25700 -0.8 -1.7 cyclic AMP receptor protein compare
PS417_15935 -0.8 -1.2 Rrf2 family transcriptional regulator compare
PS417_08665 -0.8 -2.6 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_22175 -0.8 -1.4 amino acid transporter LysE compare
PS417_18590 -0.8 -1.8 SAM-dependent methyltransferase compare
PS417_26240 -0.8 -1.9 N-methylproline demethylase compare
PS417_27300 -0.8 -0.7 cell division protein ZapA compare
PS417_03300 -0.8 -2.4 alanine acetyltransferase compare
PS417_02950 -0.8 -1.4 tRNA-dihydrouridine synthase B compare
PS417_14115 -0.8 -2.8 molybdate ABC transporter substrate-binding protein compare
PS417_21740 -0.8 -4.5 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_05975 -0.8 -0.6 chemotaxis protein CheW compare
PS417_18105 -0.8 -0.9 iron-dicitrate transporter substrate-binding subunit compare
PS417_21395 -0.8 -3.9 radical SAM protein compare
PS417_02150 -0.8 -4.6 potassium/proton antiporter compare
PS417_06685 -0.8 -0.7 beta-ketoadipyl CoA thiolase compare
PS417_05865 -0.8 -1.2 hypothetical protein compare
PS417_06075 -0.7 -1.3 hypothetical protein compare
PS417_10275 -0.7 -1.5 histidine kinase compare
PS417_19720 -0.7 -1.2 DNA-binding protein compare
PS417_28515 -0.7 -2.1 16S rRNA methyltransferase compare
PS417_02820 -0.7 -2.1 urea ABC transporter ATP-binding protein compare
PS417_24310 -0.7 -1.1 ankyrin compare
PS417_06895 -0.7 -1.6 DNA-binding protein compare
PS417_07565 -0.7 -1.3 hypothetical protein compare
PS417_21735 -0.7 -4.2 ABC transporter for L-Arginine, permease component 2 (from data) compare
PS417_21140 -0.7 -2.5 LysR family transcriptional regulator compare
PS417_12570 -0.7 -1.8 AP endonuclease compare
PS417_01130 -0.7 -1.6 L-glyceraldehyde 3-phosphate reductase compare
PS417_07710 -0.7 -2.6 membrane protein compare
PS417_06645 -0.7 -4.0 RNA polymerase-associated protein RapA compare
PS417_27745 -0.7 -2.2 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
PS417_15710 -0.7 -1.0 nitrate reductase compare
PS417_23105 -0.7 -0.8 hypothetical protein compare
PS417_15780 -0.7 -1.6 membrane protein compare
PS417_17960 -0.7 -1.8 LysR family transcriptional regulator compare
PS417_15285 -0.7 -0.8 type VI secretion protein compare
PS417_15885 -0.7 -0.7 GCN5 family acetyltransferase compare
PS417_14075 -0.7 -1.4 hypothetical protein compare
PS417_05500 -0.7 -1.7 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_17930 -0.7 -1.3 aldehyde dehydrogenase compare
PS417_23950 -0.7 -0.9 polynucleotide phosphorylase/polyadenylase compare
PS417_13620 -0.7 -0.8 thermostable hemolysin compare
PS417_07170 -0.7 -2.1 hypothetical protein compare
PS417_02740 -0.7 -1.2 LysR family transcriptional regulator compare
PS417_18755 -0.7 -1.3 CrtK compare
PS417_06945 -0.7 -0.9 membrane protein compare
PS417_11845 -0.7 -2.1 RpiR family transcriptional regulator compare
PS417_05200 -0.7 -2.0 DNA recombination protein RecO compare
PS417_26510 -0.7 -3.2 5,10-methylenetetrahydrofolate reductase compare
PS417_12840 -0.7 -1.7 TetR family transcriptional regulator compare
PS417_02705 -0.6 -1.4 urease accessory protein UreF compare
PS417_01270 -0.6 -1.3 iron ABC transporter substrate-binding protein compare
PS417_12650 -0.6 -1.4 magnesium transporter compare
PS417_05570 -0.6 -2.5 DeoR faimly transcriptional regulator compare
PS417_20725 -0.6 -1.0 cbb3-type cytochrome c oxidase subunit II compare
PS417_04310 -0.6 -2.9 hypothetical protein compare
PS417_25975 -0.6 -3.8 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_10720 -0.6 -4.2 chemotaxis protein CheY compare
PS417_27035 -0.6 -1.6 FAD-linked oxidase compare
PS417_17610 -0.6 -0.5 AsnC family transcriptional regulator compare
PS417_00155 -0.6 -2.6 2-dehydro-3-deoxygalactonokinase compare
PS417_11510 -0.6 -1.1 AraC family transcriptional regulator compare
PS417_24805 -0.6 -3.1 Fis family transcriptional regulator compare
PS417_00485 -0.6 -1.3 ABC transporter permease compare
PS417_24810 -0.6 -3.6 aldehyde dehydrogenase compare
PS417_12005 -0.6 -1.3 hypothetical protein compare
PS417_12710 -0.6 -1.8 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) compare
PS417_22340 -0.6 -1.4 carbamate kinase compare
PS417_06620 -0.6 -1.6 hypothetical protein compare
PS417_23475 -0.6 -1.0 hypothetical protein compare
PS417_07165 -0.6 -2.7 dihydrodipicolinate synthase compare
PS417_18775 -0.6 -2.3 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source L-Ornithine in Pseudomonas simiae WCS417

For carbon source L-Ornithine across organisms