Experiment set17IT018 for Pseudomonas simiae WCS417

Compare to:

Carbon source L-Ornithine 10 mM

200 most important genes:

  gene name fitness t score description  
PS417_23805 -5.6 -5.4 acetolactate synthase 3 regulatory subunit compare
PS417_00185 -5.5 -3.8 tryptophan synthase subunit beta compare
PS417_17580 -5.5 -6.4 citrulline utilization hydrolase (from data) conserved
PS417_17590 -5.2 -3.3 ABC transporter substrate-binding protein compare
PS417_23810 -4.8 -11.7 acetolactate synthase 3 catalytic subunit compare
PS417_18600 -4.8 -3.9 isopropylmalate isomerase compare
PS417_18560 -4.7 -12.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25720 -4.7 -9.8 anthranilate synthase component II compare
PS417_18585 -4.6 -7.0 3-isopropylmalate dehydrogenase compare
PS417_26740 -4.5 -10.1 homoserine acetyltransferase compare
PS417_25725 -4.5 -15.6 anthranilate synthase component I compare
PS417_23995 -4.3 -1.6 preprotein translocase subunit SecG compare
PS417_23800 -4.1 -13.2 ketol-acid reductoisomerase compare
PS417_18595 -4.1 -5.6 3-isopropylmalate dehydratase compare
PS417_02415 -4.0 -7.2 phosphoserine phosphatase compare
PS417_27040 -3.9 -4.4 3-phosphoglycerate dehydrogenase compare
PS417_16465 -3.8 -10.1 sirohydrochlorin ferrochelatase compare
PS417_17605 -3.8 -9.4 amino acid transporter conserved
PS417_01565 -3.8 -6.0 imidazole glycerol phosphate synthase compare
PS417_20125 -3.8 -3.6 phosphoribosylglycinamide formyltransferase compare
PS417_01575 -3.8 -3.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_17600 -3.7 -11.5 amino acid ABC transporter permease compare
PS417_17585 -3.6 -9.1 ornithine cyclodeaminase conserved
PS417_26985 -3.5 -4.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01850 -3.5 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_25710 -3.4 -1.8 indole-3-glycerol-phosphate synthase compare
PS417_18530 -3.3 -5.0 O-succinylhomoserine sulfhydrylase compare
PS417_02510 -3.3 -5.8 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25715 -3.3 -5.8 anthranilate phosphoribosyltransferase compare
PS417_23770 -3.2 -2.2 exodeoxyribonuclease V subunit alpha compare
PS417_04420 -3.2 -9.4 histidinol dehydrogenase compare
PS417_17595 -3.2 -5.6 amino acid ABC transporter permease compare
PS417_01855 -3.1 -3.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_26890 -3.1 -7.0 dihydroxy-acid dehydratase compare
PS417_23110 -3.1 -7.8 2-isopropylmalate synthase compare
PS417_04415 -3.1 -9.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_17610 -3.0 -2.0 AsnC family transcriptional regulator compare
PS417_05595 -2.9 -11.5 ornithine carbamoyltransferase compare
PS417_26995 -2.8 -9.3 phosphoserine phosphatase compare
PS417_00180 -2.8 -3.8 tryptophan synthase subunit alpha compare
PS417_02175 -2.8 -2.8 transcriptional regulator compare
PS417_12290 -2.8 -7.2 sulfite reductase compare
PS417_01580 -2.7 -1.8 imidazole glycerol phosphate synthase compare
PS417_12855 -2.6 -5.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26745 -2.5 -4.2 methionine biosynthesis protein MetW compare
PS417_20985 -2.3 -2.2 porin compare
PS417_01570 -2.3 -2.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_07470 -2.0 -2.3 hypothetical protein compare
PS417_27435 -2.0 -7.4 polyphosphate kinase compare
PS417_04385 -2.0 -4.1 organic solvent ABC transporter substrate-binding protein compare
PS417_01920 -1.9 -1.4 ATP-dependent protease subunit HslV compare
PS417_21710 -1.9 -4.9 Succinylornithine transaminase (EC 2.6.1.81) (from data) conserved
PS417_17780 -1.8 -1.8 Ais protein compare
PS417_07640 -1.8 -3.2 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_07170 -1.8 -4.8 hypothetical protein compare
PS417_27940 -1.8 -2.2 type VI secretion protein compare
PS417_01210 -1.8 -7.2 hypothetical protein compare
PS417_21430 -1.7 -2.1 3-oxoacyl-ACP synthase compare
PS417_27795 -1.7 -0.9 orotate phosphoribosyltransferase compare
PS417_24155 -1.7 -2.0 ATP-binding protein compare
PS417_24935 -1.7 -1.5 hypothetical protein compare
PS417_28070 -1.6 -6.4 phosphate ABC transporter ATP-binding protein compare
PS417_18310 -1.6 -2.3 hypothetical protein compare
PS417_27875 -1.6 -7.3 histidine kinase compare
PS417_20160 -1.6 -2.8 cysteine synthase compare
PS417_01560 -1.5 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_27835 -1.5 -5.3 endoribonuclease compare
PS417_23135 -1.5 -1.9 GTP-binding protein compare
PS417_00345 -1.5 -1.8 copper-binding protein compare
PS417_12310 -1.5 -5.9 methionine synthase compare
PS417_23900 -1.5 -7.5 poly(A) polymerase compare
PS417_06530 -1.5 -3.0 membrane protein compare
PS417_20635 -1.5 -1.4 ABC transporter ATP-binding protein compare
PS417_08155 -1.5 -1.6 integration host factor subunit beta compare
PS417_04365 -1.4 -1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_04650 -1.4 -1.3 D-alanine--D-alanine ligase compare
PS417_08410 -1.4 -3.2 hypothetical protein compare
PS417_14980 -1.4 -1.5 universal stress protein UspA compare
PS417_03925 -1.4 -6.6 nicotinate-nucleotide pyrophosphorylase compare
PS417_12355 -1.4 -1.8 magnesium chelatase compare
PS417_27155 -1.3 -1.6 aliphatic sulfonates transport ATP-binding subunit compare
PS417_21695 -1.3 -2.2 succinylglutamate-semialdehyde dehydrogenase compare
PS417_21680 -1.3 -1.5 succinylglutamate desuccinylase compare
PS417_21425 -1.3 -1.6 4-amino-4-deoxychorismate lyase compare
PS417_04375 -1.3 -2.0 ABC transporter ATP-binding protein compare
PS417_06245 -1.3 -2.0 zinc metallopeptidase RseP compare
PS417_07575 -1.2 -3.4 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_17240 -1.2 -3.2 trigger factor compare
PS417_21395 -1.2 -6.7 radical SAM protein compare
PS417_28515 -1.2 -3.2 16S rRNA methyltransferase compare
PS417_23950 -1.2 -1.5 polynucleotide phosphorylase/polyadenylase compare
PS417_01950 -1.2 -4.1 malate dehydrogenase compare
PS417_27640 -1.2 -1.4 TetR family transcriptional regulator compare
PS417_08665 -1.2 -4.0 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_28080 -1.2 -7.7 phosphate ABC transporter permease compare
PS417_02805 -1.1 -2.0 urease subunit gamma compare
PS417_04380 -1.1 -0.9 ABC transporter permease compare
PS417_21750 -1.1 -8.2 acetyl-CoA synthetase compare
PS417_18690 -1.1 -3.2 aromatic amino acid aminotransferase compare
PS417_05100 -1.1 -2.3 RNA polymerase sigma factor compare
PS417_11400 -1.1 -1.6 phosphoglycerate mutase compare
PS417_11175 -1.1 -2.4 AraC family transcriptional regulator compare
PS417_05165 -1.1 -3.1 cytosol aminopeptidase compare
PS417_27035 -1.1 -5.0 FAD-linked oxidase compare
PS417_10095 -1.1 -2.1 hypothetical protein compare
PS417_00065 -1.1 -1.2 3-methyladenine DNA glycosylase compare
PS417_05570 -1.1 -3.9 DeoR faimly transcriptional regulator compare
PS417_10995 -1.1 -2.2 GntR family transcriptional regulator compare
PS417_27305 -1.1 -3.5 5-formyltetrahydrofolate cyclo-ligase compare
PS417_02225 -1.1 -2.0 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_05975 -1.0 -0.7 chemotaxis protein CheW compare
PS417_02150 -1.0 -5.6 potassium/proton antiporter compare
PS417_03785 -1.0 -2.0 pilus assembly protein PilV compare
PS417_05590 -1.0 -3.7 iron ABC transporter ATP-binding protein compare
PS417_01265 -1.0 -6.3 CbbBc protein compare
PS417_21700 -1.0 -2.5 arginine N-succinyltransferase compare
PS417_03300 -1.0 -2.8 alanine acetyltransferase compare
PS417_13710 -1.0 -2.4 hypothetical protein compare
PS417_21745 -1.0 -3.8 ABC transporter for L-Arginine, substrate-binding component (from data) compare
PS417_12695 -1.0 -4.1 mannitol dehydrogenase compare
PS417_13010 -1.0 -1.6 alpha/beta hydrolase compare
PS417_04865 -1.0 -1.8 molybdenum cofactor biosynthesis protein MoaC compare
PS417_02555 -1.0 -7.1 exoribonuclease R compare
PS417_15085 -1.0 -3.5 ATPase AAA compare
PS417_00995 -1.0 -1.6 alpha/beta hydrolase compare
PS417_08105 -1.0 -6.9 N-ethylammeline chlorohydrolase compare
PS417_17705 -0.9 -2.4 LacI family transcriptional regulator compare
PS417_27800 -0.9 -1.3 exodeoxyribonuclease III compare
PS417_13755 -0.9 -2.0 oxidoreductase compare
PS417_13510 -0.9 -1.0 polyketide cyclase compare
PS417_08125 -0.9 -0.6 prephenate dehydratase compare
PS417_19225 -0.9 -4.5 FAD-dependent cmnm(5)s(2)U34 oxidoreductase compare
PS417_22385 -0.9 -6.4 quinolinate synthase A compare
PS417_22705 -0.9 -2.2 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_17035 -0.9 -1.2 Cro/Cl family transcriptional regulator compare
PS417_11845 -0.9 -3.6 RpiR family transcriptional regulator compare
PS417_27690 -0.9 -2.5 XRE family transcriptional regulator compare
PS417_24810 -0.9 -4.7 aldehyde dehydrogenase compare
PS417_21740 -0.9 -3.4 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_21210 -0.9 -1.7 amidotransferase compare
PS417_13620 -0.9 -1.6 thermostable hemolysin compare
PS417_21020 -0.9 -6.1 phosphoenolpyruvate synthase compare
PS417_06375 -0.9 -0.7 deoxycytidine triphosphate deaminase compare
PS417_27585 -0.9 -1.5 diaminopimelate epimerase compare
PS417_02980 -0.9 -1.2 chemotaxis protein compare
PS417_26420 -0.9 -1.5 hypothetical protein compare
PS417_06075 -0.8 -1.6 hypothetical protein compare
PS417_18635 -0.8 -2.7 4-hydroxybenzoyl-CoA thioesterase compare
PS417_00845 -0.8 -1.1 transcriptional regulator compare
PS417_21735 -0.8 -4.9 ABC transporter for L-Arginine, permease component 2 (from data) compare
PS417_26040 -0.8 -2.0 malate synthase compare
PS417_04875 -0.8 -1.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_23025 -0.8 -3.4 murein transglycosylase compare
PS417_14075 -0.8 -1.6 hypothetical protein compare
PS417_14200 -0.8 -1.7 hypothetical protein compare
PS417_00220 -0.8 -1.3 hypothetical protein compare
PS417_19335 -0.8 -1.3 isochorismatase compare
PS417_00370 -0.8 -0.8 hypothetical protein compare
PS417_02895 -0.8 -1.8 precorrin-6Y C5,15-methyltransferase compare
PS417_16990 -0.8 -3.9 acyl-CoA dehydrogenase compare
PS417_06645 -0.8 -3.9 RNA polymerase-associated protein RapA compare
PS417_11810 -0.8 -2.3 oxidoreductase compare
PS417_16715 -0.8 -1.3 DoxX family protein compare
PS417_19195 -0.8 -2.2 hypothetical protein compare
PS417_16275 -0.8 -2.2 hypothetical protein compare
PS417_01270 -0.8 -1.5 iron ABC transporter substrate-binding protein compare
PS417_15915 -0.8 -0.9 hypothetical protein compare
PS417_22165 -0.8 -2.7 LysR family transcriptional regulator compare
PS417_01555 -0.8 -5.4 MFS transporter compare
PS417_15770 -0.8 -1.1 pyridoxine 5'-phosphate oxidase compare
PS417_18235 -0.8 -1.9 nitrile hydratase compare
PS417_04050 -0.8 -1.3 peptide ABC transporter ATP-binding protein compare
PS417_27245 -0.8 -2.8 aminotransferase DegT compare
PS417_21360 -0.7 -0.9 termination factor Rho compare
PS417_28085 -0.7 -4.9 phosphate-binding protein compare
PS417_21850 -0.7 -0.9 LysR family transcriptional regulator compare
PS417_01290 -0.7 -1.3 ADP-ribose diphosphatase compare
PS417_15885 -0.7 -1.3 GCN5 family acetyltransferase compare
PS417_05160 -0.7 -0.7 DNA polymerase III subunit chi compare
PS417_16870 -0.7 -1.7 short-chain dehydrogenase compare
PS417_01195 -0.7 -1.9 RNA-binding protein S4 compare
PS417_02990 -0.7 -1.4 hypothetical protein compare
PS417_01605 -0.7 -0.9 phosphoglycerate mutase compare
PS417_24805 -0.7 -4.7 Fis family transcriptional regulator compare
PS417_08650 -0.7 -1.6 transcriptional regulator compare
PS417_08380 -0.7 -3.9 ABC transporter ATP-binding protein compare
PS417_27745 -0.7 -2.4 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
PS417_26510 -0.7 -3.5 5,10-methylenetetrahydrofolate reductase compare
PS417_00535 -0.7 -1.9 Holliday junction resolvase compare
PS417_20825 -0.7 -1.7 drug:proton antiporter compare
PS417_19270 -0.7 -1.7 hypothetical protein compare
PS417_17855 -0.7 -1.6 major facilitator transporter compare
PS417_12910 -0.7 -2.3 alanine racemase compare
PS417_28075 -0.7 -3.6 phosphate ABC transporter permease compare
PS417_26730 -0.7 -0.7 pyrroline-5-carboxylate reductase compare
PS417_20725 -0.7 -1.2 cbb3-type cytochrome c oxidase subunit II compare
PS417_08540 -0.7 -1.5 RNA helicase compare
PS417_24705 -0.7 -1.7 D-alanyl-D-alanine carboxypeptidase compare
PS417_07560 -0.7 -1.2 universal stress protein UspA compare
PS417_09915 -0.7 -1.1 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source L-Ornithine in Pseudomonas simiae WCS417

For carbon source L-Ornithine across organisms