Experiment set17IT017 for Pseudomonas simiae WCS417

Compare to:

Carbon source D-Mannitol 2.5 mM

200 most important genes:

  gene name fitness t score description  
PS417_27040 -5.9 -3.0 3-phosphoglycerate dehydrogenase compare
PS417_18595 -5.1 -4.8 3-isopropylmalate dehydratase compare
PS417_08155 -5.0 -2.7 integration host factor subunit beta compare
PS417_02415 -4.5 -7.5 phosphoserine phosphatase compare
PS417_23995 -4.3 -1.4 preprotein translocase subunit SecG compare
PS417_12690 -4.3 -4.6 xylulose kinase conserved
PS417_25715 -4.1 -7.4 anthranilate phosphoribosyltransferase compare
PS417_08025 -3.9 -2.2 acetylornithine aminotransferase compare
PS417_01575 -3.9 -6.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18560 -3.9 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_22690 -3.7 -5.0 phosphogluconate dehydratase compare
PS417_01570 -3.6 -2.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_12710 -3.6 -6.8 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) conserved
PS417_01855 -3.6 -3.7 phosphoribosyl-AMP cyclohydrolase compare
PS417_18585 -3.5 -4.7 3-isopropylmalate dehydrogenase compare
PS417_26740 -3.5 -9.3 homoserine acetyltransferase compare
PS417_18600 -3.5 -3.0 isopropylmalate isomerase compare
PS417_23800 -3.4 -10.4 ketol-acid reductoisomerase compare
PS417_04415 -3.4 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_25725 -3.2 -12.1 anthranilate synthase component I compare
PS417_12695 -3.0 -4.9 mannitol dehydrogenase compare
PS417_08125 -3.0 -1.0 prephenate dehydratase compare
PS417_04420 -3.0 -7.2 histidinol dehydrogenase compare
PS417_02510 -2.9 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_23810 -2.9 -9.8 acetolactate synthase 3 catalytic subunit compare
PS417_26745 -2.9 -5.3 methionine biosynthesis protein MetW compare
PS417_25720 -2.8 -6.4 anthranilate synthase component II compare
PS417_26730 -2.7 -1.2 pyrroline-5-carboxylate reductase compare
PS417_12700 -2.7 -4.5 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) conserved
PS417_20985 -2.7 -1.8 porin compare
PS417_12715 -2.7 -8.5 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) conserved
PS417_12705 -2.7 -9.1 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) conserved
PS417_04650 -2.6 -1.1 D-alanine--D-alanine ligase compare
PS417_23545 -2.6 -2.9 gamma-glutamyl kinase compare
PS417_00185 -2.6 -3.3 tryptophan synthase subunit beta compare
PS417_04380 -2.5 -1.4 ABC transporter permease compare
PS417_05595 -2.5 -8.0 ornithine carbamoyltransferase compare
PS417_25710 -2.5 -1.4 indole-3-glycerol-phosphate synthase compare
PS417_01565 -2.4 -3.8 imidazole glycerol phosphate synthase compare
PS417_01605 -2.4 -1.5 phosphoglycerate mutase compare
PS417_24745 -2.4 -4.3 gamma-glutamyl phosphate reductase compare
PS417_02005 -2.3 -10.2 glutamate synthase compare
PS417_08090 -2.3 -0.9 3-oxoacyl-ACP reductase compare
PS417_05975 -2.2 -1.0 chemotaxis protein CheW compare
PS417_18530 -2.2 -3.9 O-succinylhomoserine sulfhydrylase compare
PS417_28220 -2.2 -1.5 LysR family transcriptional regulator compare
PS417_01580 -2.2 -1.9 imidazole glycerol phosphate synthase compare
PS417_27195 -2.2 -1.7 N-acetylglutamate synthase compare
PS417_24155 -2.2 -2.1 ATP-binding protein compare
PS417_16465 -2.2 -5.1 sirohydrochlorin ferrochelatase compare
PS417_12855 -2.1 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02000 -2.1 -10.9 glutamate synthase compare
PS417_01560 -2.1 -2.2 imidazoleglycerol-phosphate dehydratase compare
PS417_23110 -2.0 -5.7 2-isopropylmalate synthase compare
PS417_26985 -2.0 -6.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_23805 -1.9 -3.1 acetolactate synthase 3 regulatory subunit compare
PS417_01850 -1.9 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23770 -1.9 -2.5 exodeoxyribonuclease V subunit alpha compare
PS417_07875 -1.8 -1.2 hypothetical protein compare
PS417_12725 -1.8 -2.3 AraC family transcriptional regulator conserved
PS417_27870 -1.8 -3.2 ATP-dependent DNA helicase RecG compare
PS417_26890 -1.8 -4.5 dihydroxy-acid dehydratase compare
PS417_13620 -1.8 -2.2 thermostable hemolysin compare
PS417_06685 -1.8 -1.1 beta-ketoadipyl CoA thiolase compare
PS417_12290 -1.8 -4.9 sulfite reductase compare
PS417_01920 -1.8 -1.4 ATP-dependent protease subunit HslV compare
PS417_06375 -1.7 -0.9 deoxycytidine triphosphate deaminase compare
PS417_00180 -1.7 -3.7 tryptophan synthase subunit alpha compare
PS417_07470 -1.7 -1.8 hypothetical protein compare
PS417_18310 -1.7 -1.6 hypothetical protein compare
PS417_26995 -1.7 -7.0 phosphoserine phosphatase compare
PS417_17215 -1.6 -2.1 peptidylprolyl isomerase compare
PS417_03525 -1.6 -2.1 hypothetical protein compare
PS417_06445 -1.6 -1.6 iron-siderophore ABC transporter permease compare
PS417_18360 -1.6 -2.2 hypothetical protein compare
PS417_07575 -1.6 -2.8 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_15285 -1.6 -1.3 type VI secretion protein compare
PS417_01435 -1.6 -1.4 hypothetical protein compare
PS417_19095 -1.5 -1.7 hypothetical protein compare
PS417_08200 -1.5 -2.0 hypothetical protein compare
PS417_08410 -1.5 -1.9 hypothetical protein compare
PS417_27940 -1.4 -1.8 type VI secretion protein compare
PS417_17930 -1.4 -1.7 aldehyde dehydrogenase compare
PS417_21065 -1.4 -2.5 3-methylitaconate isomerase compare
PS417_13510 -1.4 -1.1 polyketide cyclase compare
PS417_08620 -1.4 -1.1 hypothetical protein compare
PS417_10675 -1.4 -1.1 TetR family transcriptional regulator compare
PS417_15305 -1.3 -2.4 type VI secretion protein compare
PS417_24460 -1.3 -1.6 hypothetical protein compare
PS417_24585 -1.3 -6.0 AMP nucleosidase compare
PS417_01290 -1.3 -1.6 ADP-ribose diphosphatase compare
PS417_04375 -1.3 -2.0 ABC transporter ATP-binding protein compare
PS417_15095 -1.3 -2.2 hypothetical protein compare
PS417_19335 -1.2 -2.3 isochorismatase compare
PS417_04385 -1.2 -2.2 organic solvent ABC transporter substrate-binding protein compare
PS417_09930 -1.2 -1.7 hypothetical protein compare
PS417_08685 -1.2 -1.8 flagellar hook-length control protein FliK compare
PS417_02475 -1.2 -2.4 N-acetylmuramoyl-L-alanine amidase compare
PS417_27835 -1.2 -5.2 endoribonuclease compare
PS417_23950 -1.2 -1.9 polynucleotide phosphorylase/polyadenylase compare
PS417_22050 -1.2 -2.5 ribonuclease BN compare
PS417_28225 -1.2 -1.5 hypothetical protein compare
PS417_07170 -1.1 -3.4 hypothetical protein compare
PS417_12310 -1.1 -4.5 methionine synthase compare
PS417_14980 -1.1 -1.1 universal stress protein UspA compare
PS417_10720 -1.1 -4.4 chemotaxis protein CheY compare
PS417_04865 -1.1 -2.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_16490 -1.1 -1.4 cell division protein FtsK compare
PS417_24785 -1.1 -1.5 nucleoside-diphosphate sugar epimerase compare
PS417_07710 -1.1 -3.1 membrane protein compare
PS417_20610 -1.1 -1.1 hypothetical protein compare
PS417_12355 -1.1 -1.3 magnesium chelatase compare
PS417_15090 -1.1 -1.4 hypothetical protein compare
PS417_23025 -1.1 -3.9 murein transglycosylase compare
PS417_03925 -1.1 -3.4 nicotinate-nucleotide pyrophosphorylase compare
PS417_27515 -1.0 -2.8 heme biosynthesis protein HemY compare
PS417_27605 -1.0 -3.2 hypothetical protein compare
PS417_02560 -1.0 -1.7 23S rRNA methyltransferase compare
PS417_06245 -1.0 -1.3 zinc metallopeptidase RseP compare
PS417_24115 -1.0 -1.4 hypothetical protein compare
PS417_17490 -1.0 -1.9 ABC transporter ATP-binding protein compare
PS417_05365 -1.0 -1.9 FAD-binding protein compare
PS417_27610 -1.0 -5.3 hypothetical protein compare
PS417_08220 -1.0 -0.6 epimerase compare
PS417_26530 -1.0 -1.2 hypothetical protein compare
PS417_13455 -1.0 -2.2 alkaline proteinase inhibitor compare
PS417_09915 -1.0 -1.5 hypothetical protein compare
PS417_20160 -1.0 -3.2 cysteine synthase compare
PS417_27690 -1.0 -2.7 XRE family transcriptional regulator compare
PS417_27585 -1.0 -1.5 diaminopimelate epimerase compare
PS417_04050 -0.9 -1.4 peptide ABC transporter ATP-binding protein compare
PS417_21425 -0.9 -1.6 4-amino-4-deoxychorismate lyase compare
PS417_24805 -0.9 -3.5 Fis family transcriptional regulator compare
PS417_24895 -0.9 -1.2 hypothetical protein compare
PS417_27875 -0.9 -4.3 histidine kinase compare
PS417_06075 -0.9 -1.4 hypothetical protein compare
PS417_10040 -0.9 -0.8 MFS transporter compare
PS417_13660 -0.9 -1.6 AsnC family transcriptional regulator compare
PS417_13790 -0.9 -2.7 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_23215 -0.9 -3.0 RNA methyltransferase compare
PS417_10245 -0.9 -0.9 hypothetical protein compare
PS417_28020 -0.9 -2.6 chorismate--pyruvate lyase compare
PS417_01285 -0.9 -1.2 haloacid dehalogenase compare
PS417_09160 -0.9 -1.6 GNAT family acetyltransferase compare
PS417_08545 -0.9 -1.5 aromatic ring-opening dioxygenase LigB compare
PS417_04180 -0.9 -1.6 GntR family transcriptional regulator compare
PS417_18800 -0.9 -1.7 hypothetical protein compare
PS417_07820 -0.9 -1.8 transposase compare
PS417_00960 -0.9 -1.0 transcriptional regulator compare
PS417_03965 -0.9 -3.6 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
PS417_13075 -0.9 -1.0 hypothetical protein compare
PS417_25315 -0.9 -2.5 membrane protein compare
PS417_09580 -0.9 -2.3 tyrosyl-trna synthetase compare
PS417_20785 -0.9 -2.0 transcriptional regulator compare
PS417_20055 -0.9 -2.5 cob(II)yrinic acid a,c-diamide reductase compare
PS417_14835 -0.9 -2.0 amidase compare
PS417_02160 -0.9 -0.9 hypothetical protein compare
PS417_10060 -0.8 -1.3 hypothetical protein compare
PS417_06780 -0.8 -1.8 TetR family transcriptional regulator compare
PS417_03725 -0.8 -2.5 acyltransferase compare
PS417_17855 -0.8 -1.4 major facilitator transporter compare
PS417_19425 -0.8 -0.7 allantoicase compare
PS417_21750 -0.8 -6.0 acetyl-CoA synthetase compare
PS417_19090 -0.8 -1.9 hypothetical protein compare
PS417_03300 -0.8 -2.2 alanine acetyltransferase compare
PS417_08515 -0.8 -2.8 hypothetical protein compare
PS417_05010 -0.8 -0.9 IclR family transcriptional regulator compare
PS417_07870 -0.8 -1.2 hypothetical protein compare
PS417_13240 -0.8 -1.8 siderophore biosynthesis protein compare
PS417_00370 -0.8 -0.7 hypothetical protein compare
PS417_10535 -0.8 -1.6 hypothetical protein compare
PS417_26990 -0.8 -0.8 RNA pyrophosphohydrolase compare
PS417_17750 -0.8 -1.8 hypothetical protein compare
PS417_19085 -0.8 -2.3 hypothetical protein compare
PS417_08365 -0.8 -0.7 hypothetical protein compare
PS417_10015 -0.8 -0.8 hypothetical protein compare
PS417_21395 -0.8 -3.5 radical SAM protein compare
PS417_05570 -0.8 -1.5 DeoR faimly transcriptional regulator compare
PS417_20715 -0.8 -1.6 cytochrome Cbb3 compare
PS417_24265 -0.8 -2.2 ABC transporter ATP-binding protein compare
PS417_13425 -0.8 -0.9 cupin compare
PS417_14075 -0.8 -1.2 hypothetical protein compare
PS417_16310 -0.8 -1.9 membrane protein compare
PS417_26685 -0.8 -1.1 hypothetical protein compare
PS417_15465 -0.8 -1.7 carboxynorspermidine decarboxylase compare
PS417_17240 -0.7 -1.9 trigger factor compare
PS417_04980 -0.7 -2.2 response regulator receiver protein compare
PS417_14880 -0.7 -1.5 thioesterase compare
PS417_18590 -0.7 -2.4 SAM-dependent methyltransferase compare
PS417_10715 -0.7 -1.4 Cro/Cl family transcriptional regulator compare
PS417_18130 -0.7 -2.0 ABC transporter substrate-binding protein compare
PS417_06600 -0.7 -0.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_26510 -0.7 -4.2 5,10-methylenetetrahydrofolate reductase compare
PS417_23670 -0.7 -1.4 Muconate cycloisomerase (EC 5.5.1.1) (from data) compare
PS417_24810 -0.7 -3.7 aldehyde dehydrogenase compare
PS417_23135 -0.7 -0.5 GTP-binding protein compare
PS417_17480 -0.7 -2.3 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_04270 -0.7 -3.0 ribonuclease G compare
PS417_15100 -0.7 -0.8 BatB protein compare
PS417_19125 -0.7 -2.1 LysR family transcriptional regulator compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source D-Mannitol in Pseudomonas simiae WCS417

For carbon source D-Mannitol across organisms