Experiment set17IT016 for Pseudomonas simiae WCS417

Compare to:

Carbon source D-Mannitol 5 mM

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.6 -5.0 isopropylmalate isomerase compare
PS417_27040 -5.9 -3.3 3-phosphoglycerate dehydrogenase compare
PS417_23545 -5.4 -3.7 gamma-glutamyl kinase compare
PS417_23805 -5.4 -5.2 acetolactate synthase 3 regulatory subunit compare
PS417_18595 -5.1 -5.3 3-isopropylmalate dehydratase compare
PS417_12690 -5.0 -5.7 xylulose kinase conserved
PS417_18560 -5.0 -10.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_12725 -4.9 -6.1 AraC family transcriptional regulator conserved
PS417_12855 -4.5 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26740 -4.5 -10.3 homoserine acetyltransferase compare
PS417_18585 -4.5 -6.8 3-isopropylmalate dehydrogenase compare
PS417_23995 -4.3 -1.7 preprotein translocase subunit SecG compare
PS417_23800 -4.3 -13.5 ketol-acid reductoisomerase compare
PS417_12695 -4.3 -8.1 mannitol dehydrogenase compare
PS417_25725 -4.2 -14.9 anthranilate synthase component I compare
PS417_12700 -4.1 -5.7 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) conserved
PS417_24745 -4.1 -4.0 gamma-glutamyl phosphate reductase compare
PS417_25720 -4.1 -8.6 anthranilate synthase component II compare
PS417_23810 -3.9 -11.5 acetolactate synthase 3 catalytic subunit compare
PS417_01575 -3.9 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_26745 -3.9 -7.1 methionine biosynthesis protein MetW compare
PS417_01850 -3.9 -7.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_06375 -3.9 -1.5 deoxycytidine triphosphate deaminase compare
PS417_18530 -3.8 -5.6 O-succinylhomoserine sulfhydrylase compare
PS417_12710 -3.8 -6.0 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) conserved
PS417_02510 -3.8 -9.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26890 -3.7 -7.3 dihydroxy-acid dehydratase compare
PS417_25710 -3.5 -1.9 indole-3-glycerol-phosphate synthase compare
PS417_12715 -3.4 -8.9 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) conserved
PS417_02005 -3.4 -11.9 glutamate synthase compare
PS417_01565 -3.4 -5.3 imidazole glycerol phosphate synthase compare
PS417_00185 -3.4 -5.1 tryptophan synthase subunit beta compare
PS417_22690 -3.3 -5.5 phosphogluconate dehydratase compare
PS417_01855 -3.3 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_04415 -3.3 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_28220 -3.3 -4.2 LysR family transcriptional regulator compare
PS417_04420 -3.2 -9.7 histidinol dehydrogenase compare
PS417_23770 -3.2 -2.2 exodeoxyribonuclease V subunit alpha compare
PS417_16465 -3.2 -10.1 sirohydrochlorin ferrochelatase compare
PS417_05595 -3.2 -8.5 ornithine carbamoyltransferase compare
PS417_12705 -3.1 -10.2 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) conserved
PS417_23110 -3.1 -7.9 2-isopropylmalate synthase compare
PS417_25715 -3.1 -7.2 anthranilate phosphoribosyltransferase compare
PS417_08125 -3.1 -1.1 prephenate dehydratase compare
PS417_02000 -3.0 -13.1 glutamate synthase compare
PS417_12290 -3.0 -9.6 sulfite reductase compare
PS417_02415 -2.8 -5.6 phosphoserine phosphatase compare
PS417_20985 -2.8 -1.9 porin compare
PS417_26730 -2.7 -1.5 pyrroline-5-carboxylate reductase compare
PS417_27195 -2.7 -2.0 N-acetylglutamate synthase compare
PS417_01570 -2.6 -1.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_00180 -2.6 -3.1 tryptophan synthase subunit alpha compare
PS417_23950 -2.5 -2.2 polynucleotide phosphorylase/polyadenylase compare
PS417_01560 -2.4 -3.6 imidazoleglycerol-phosphate dehydratase compare
PS417_01605 -2.4 -1.6 phosphoglycerate mutase compare
PS417_16490 -2.3 -2.4 cell division protein FtsK compare
PS417_27835 -2.2 -10.6 endoribonuclease compare
PS417_20125 -2.2 -3.8 phosphoribosylglycinamide formyltransferase compare
PS417_26990 -2.1 -1.5 RNA pyrophosphohydrolase compare
PS417_26995 -2.0 -7.4 phosphoserine phosphatase compare
PS417_01580 -2.0 -1.2 imidazole glycerol phosphate synthase compare
PS417_27875 -1.9 -7.3 histidine kinase compare
PS417_22385 -1.9 -9.1 quinolinate synthase A compare
PS417_27795 -1.9 -1.0 orotate phosphoribosyltransferase compare
PS417_03925 -1.9 -6.5 nicotinate-nucleotide pyrophosphorylase compare
PS417_24155 -1.8 -2.4 ATP-binding protein compare
PS417_04375 -1.6 -2.4 ABC transporter ATP-binding protein compare
PS417_13855 -1.6 -1.6 acetyl-CoA acetyltransferase compare
PS417_04650 -1.6 -0.8 D-alanine--D-alanine ligase compare
PS417_20160 -1.5 -3.1 cysteine synthase compare
PS417_05975 -1.5 -1.0 chemotaxis protein CheW compare
PS417_26985 -1.5 -4.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_24585 -1.5 -8.2 AMP nucleosidase compare
PS417_01710 -1.5 -6.1 histidine utilization repressor compare
PS417_20635 -1.5 -1.4 ABC transporter ATP-binding protein compare
PS417_07575 -1.4 -4.3 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_18310 -1.3 -1.3 hypothetical protein compare
PS417_27135 -1.3 -1.1 glutamine synthetase compare
PS417_07565 -1.3 -3.1 hypothetical protein compare
PS417_27585 -1.3 -3.1 diaminopimelate epimerase compare
PS417_07115 -1.3 -8.0 L-aspartate oxidase compare
PS417_16715 -1.3 -2.2 DoxX family protein compare
PS417_08155 -1.3 -1.7 integration host factor subunit beta compare
PS417_19425 -1.3 -1.1 allantoicase compare
PS417_02475 -1.2 -2.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_27640 -1.2 -1.6 TetR family transcriptional regulator compare
PS417_04380 -1.2 -0.9 ABC transporter permease compare
PS417_04865 -1.2 -2.4 molybdenum cofactor biosynthesis protein MoaC compare
PS417_07170 -1.2 -3.3 hypothetical protein compare
PS417_19335 -1.2 -3.1 isochorismatase compare
PS417_24460 -1.2 -2.3 hypothetical protein compare
PS417_20855 -1.1 -1.5 hypothetical protein compare
PS417_02280 -1.1 -1.9 GlcNAc-PI de-N-acetylase compare
PS417_21700 -1.1 -2.8 arginine N-succinyltransferase compare
PS417_02980 -1.1 -1.6 chemotaxis protein compare
PS417_06685 -1.1 -1.0 beta-ketoadipyl CoA thiolase compare
PS417_08410 -1.1 -1.6 hypothetical protein compare
PS417_21655 -1.1 -1.1 aspartate kinase compare
PS417_01920 -1.1 -1.3 ATP-dependent protease subunit HslV compare
PS417_13445 -1.1 -1.3 D-aminopeptidase compare
PS417_13075 -1.1 -1.3 hypothetical protein compare
PS417_18690 -1.1 -2.0 aromatic amino acid aminotransferase compare
PS417_05535 -1.1 -1.4 Fis family transcriptional regulator compare
PS417_05165 -1.1 -2.0 cytosol aminopeptidase compare
PS417_19720 -1.0 -1.3 DNA-binding protein compare
PS417_21830 -1.0 -3.0 TetR family transcriptional regulator compare
PS417_03300 -1.0 -2.0 alanine acetyltransferase compare
PS417_21705 -1.0 -3.0 arginine N-succinyltransferase compare
PS417_27435 -1.0 -5.4 polyphosphate kinase compare
PS417_04385 -1.0 -2.4 organic solvent ABC transporter substrate-binding protein compare
PS417_04500 -1.0 -1.4 hypothetical protein compare
PS417_00455 -1.0 -1.6 hypothetical protein compare
PS417_23025 -1.0 -4.0 murein transglycosylase compare
PS417_22695 -0.9 -4.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_13010 -0.9 -1.4 alpha/beta hydrolase compare
PS417_00065 -0.9 -1.7 3-methyladenine DNA glycosylase compare
PS417_04270 -0.9 -4.0 ribonuclease G compare
PS417_15105 -0.9 -3.5 membrane protein compare
PS417_08090 -0.9 -0.9 3-oxoacyl-ACP reductase compare
PS417_08665 -0.9 -3.1 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_20825 -0.9 -1.9 drug:proton antiporter compare
PS417_17780 -0.9 -1.0 Ais protein compare
PS417_27610 -0.9 -5.4 hypothetical protein compare
PS417_26900 -0.9 -1.6 L-cystine transporter tcyP compare
PS417_16990 -0.9 -3.4 acyl-CoA dehydrogenase compare
PS417_20785 -0.9 -3.0 transcriptional regulator compare
PS417_22060 -0.9 -1.1 hypothetical protein compare
PS417_12310 -0.9 -4.4 methionine synthase compare
PS417_26805 -0.9 -1.0 cell division protein FtsE compare
PS417_21750 -0.9 -7.1 acetyl-CoA synthetase compare
PS417_07560 -0.9 -1.6 universal stress protein UspA compare
PS417_21125 -0.8 -3.9 phosphoadenosine phosphosulfate reductase compare
PS417_17925 -0.8 -1.5 acyl-CoA dehydrogenase compare
PS417_07710 -0.8 -2.8 membrane protein compare
PS417_15090 -0.8 -1.7 hypothetical protein compare
PS417_05710 -0.8 -2.3 hypothetical protein compare
PS417_26695 -0.8 -1.2 uracil phosphoribosyltransferase compare
PS417_01915 -0.8 -0.4 ATP-dependent protease ATP-binding subunit HslU compare
PS417_10675 -0.8 -0.9 TetR family transcriptional regulator compare
PS417_19090 -0.8 -1.8 hypothetical protein compare
PS417_13165 -0.8 -1.8 peroxidase compare
PS417_18590 -0.8 -1.8 SAM-dependent methyltransferase compare
PS417_22990 -0.8 -0.9 iron dicitrate transport regulator FecR compare
PS417_23820 -0.8 -2.8 hypothetical protein compare
PS417_04705 -0.8 -1.6 hypothetical protein compare
PS417_22720 -0.8 -3.8 membrane protein compare
PS417_27085 -0.8 -1.8 AraC family transcriptional regulator compare
PS417_26260 -0.8 -1.2 hypothetical protein compare
PS417_22445 -0.7 -2.0 ATP-dependent DNA helicase RuvB compare
PS417_27605 -0.7 -3.0 hypothetical protein compare
PS417_17155 -0.7 -1.5 cytochrome B561 compare
PS417_15100 -0.7 -1.0 BatB protein compare
PS417_01780 -0.7 -2.8 proline iminopeptidase compare
PS417_02225 -0.7 -1.6 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_21535 -0.7 -1.9 chemotaxis protein CheY compare
PS417_02895 -0.7 -1.5 precorrin-6Y C5,15-methyltransferase compare
PS417_06830 -0.7 -2.0 hypothetical protein compare
PS417_21285 -0.7 -2.2 hypothetical protein compare
PS417_02950 -0.7 -1.7 tRNA-dihydrouridine synthase B compare
PS417_07120 -0.7 -3.1 RNA polymerase sigma-H factor compare
PS417_24310 -0.7 -1.7 ankyrin compare
PS417_27305 -0.7 -3.7 5-formyltetrahydrofolate cyclo-ligase compare
PS417_17125 -0.7 -1.3 transcriptional regulator compare
PS417_04390 -0.7 -1.9 toluene tolerance protein compare
PS417_18200 -0.7 -2.1 glyoxalase compare
PS417_18300 -0.7 -2.0 transcriptional regulator compare
PS417_21395 -0.7 -4.2 radical SAM protein compare
PS417_08685 -0.7 -1.4 flagellar hook-length control protein FliK compare
PS417_03100 -0.7 -0.8 pilus assembly protein compare
PS417_17000 -0.7 -2.2 MerR family transcriptional regulator compare
PS417_14805 -0.7 -1.4 AraC family transcriptional regulator compare
PS417_15135 -0.7 -1.1 hypothetical protein compare
PS417_04860 -0.7 -3.8 ATPase compare
PS417_19450 -0.7 -2.8 Patatin compare
PS417_06245 -0.7 -1.0 zinc metallopeptidase RseP compare
PS417_24710 -0.7 -3.6 lipoprotein compare
PS417_03725 -0.7 -2.9 acyltransferase compare
PS417_11770 -0.7 -1.5 pyruvate dehydrogenase compare
PS417_17035 -0.7 -0.9 Cro/Cl family transcriptional regulator compare
PS417_11380 -0.7 -2.4 peptidylprolyl isomerase compare
PS417_07795 -0.7 -1.7 hypothetical protein compare
PS417_09460 -0.7 -1.5 alkanesulfonate monooxygenase compare
PS417_00975 -0.7 -0.9 hypothetical protein compare
PS417_16045 -0.7 -1.9 acyl-CoA dehydrogenase compare
PS417_06710 -0.7 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_10575 -0.7 -1.6 DNA alkylation repair protein compare
PS417_21065 -0.7 -1.7 3-methylitaconate isomerase compare
PS417_12870 -0.7 -1.1 enoyl-CoA hydratase compare
PS417_12015 -0.7 -2.1 phosphoglycerate mutase compare
PS417_04410 -0.7 -0.9 hypothetical protein compare
PS417_24810 -0.7 -3.9 aldehyde dehydrogenase compare
PS417_23310 -0.7 -1.3 glyoxalase compare
PS417_00650 -0.7 -0.6 LysR family transcriptional regulator compare
PS417_22175 -0.7 -1.2 amino acid transporter LysE compare
PS417_13660 -0.7 -1.7 AsnC family transcriptional regulator compare
PS417_26445 -0.6 -1.4 ArsR family transcriptional regulator compare
PS417_06530 -0.6 -1.9 membrane protein compare
PS417_26615 -0.6 -2.1 triphosphoribosyl-dephospho-CoA synthase compare
PS417_07995 -0.6 -3.4 LOG family protein compare
PS417_01590 -0.6 -1.4 polysaccharide deacetylase compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Mannitol in Pseudomonas simiae WCS417

For carbon source D-Mannitol across organisms