Experiment set17IT015 for Pseudomonas simiae WCS417

Compare to:

Carbon source D-Mannitol 10 mM

200 most important genes:

  gene name fitness t score description  
PS417_18595 -5.0 -5.4 3-isopropylmalate dehydratase compare
PS417_23805 -4.9 -5.8 acetolactate synthase 3 regulatory subunit compare
PS417_18600 -4.6 -3.5 isopropylmalate isomerase compare
PS417_01575 -4.5 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_27040 -4.3 -4.2 3-phosphoglycerate dehydrogenase compare
PS417_23800 -4.2 -13.3 ketol-acid reductoisomerase compare
PS417_26740 -4.2 -8.3 homoserine acetyltransferase compare
PS417_12725 -4.1 -6.1 AraC family transcriptional regulator conserved
PS417_02510 -3.9 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25720 -3.8 -8.7 anthranilate synthase component II compare
PS417_12855 -3.8 -5.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_18560 -3.8 -9.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_04415 -3.8 -7.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18585 -3.8 -6.2 3-isopropylmalate dehydrogenase compare
PS417_18530 -3.8 -8.4 O-succinylhomoserine sulfhydrylase compare
PS417_12710 -3.7 -6.3 ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data) conserved
PS417_22450 -3.7 -2.1 ATP-dependent DNA helicase RuvA compare
PS417_16465 -3.7 -12.1 sirohydrochlorin ferrochelatase compare
PS417_25725 -3.6 -12.9 anthranilate synthase component I compare
PS417_01565 -3.6 -6.8 imidazole glycerol phosphate synthase compare
PS417_00180 -3.5 -3.2 tryptophan synthase subunit alpha compare
PS417_24745 -3.5 -2.8 gamma-glutamyl phosphate reductase compare
PS417_25710 -3.5 -1.6 indole-3-glycerol-phosphate synthase compare
PS417_05595 -3.4 -10.0 ornithine carbamoyltransferase compare
PS417_23810 -3.2 -11.4 acetolactate synthase 3 catalytic subunit compare
PS417_12715 -3.2 -12.3 ABC transporter for D-Mannitol and D-Sorbitol, periplasmic substrate-binding protein (from data) conserved
PS417_27795 -3.2 -1.1 orotate phosphoribosyltransferase compare
PS417_12695 -3.2 -7.6 mannitol dehydrogenase compare
PS417_26745 -3.2 -6.4 methionine biosynthesis protein MetW compare
PS417_02005 -3.2 -11.1 glutamate synthase compare
PS417_20125 -3.2 -5.7 phosphoribosylglycinamide formyltransferase compare
PS417_01580 -3.2 -1.3 imidazole glycerol phosphate synthase compare
PS417_12705 -3.2 -9.0 ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data) conserved
PS417_08125 -3.2 -1.1 prephenate dehydratase compare
PS417_02000 -3.1 -13.1 glutamate synthase compare
PS417_23545 -3.0 -3.6 gamma-glutamyl kinase compare
PS417_04420 -3.0 -10.0 histidinol dehydrogenase compare
PS417_02415 -2.9 -4.9 phosphoserine phosphatase compare
PS417_23110 -2.9 -6.5 2-isopropylmalate synthase compare
PS417_08155 -2.8 -2.7 integration host factor subunit beta compare
PS417_26890 -2.7 -4.5 dihydroxy-acid dehydratase compare
PS417_12700 -2.6 -2.5 ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data) conserved
PS417_23950 -2.6 -3.1 polynucleotide phosphorylase/polyadenylase compare
PS417_26730 -2.6 -1.3 pyrroline-5-carboxylate reductase compare
PS417_27195 -2.6 -1.7 N-acetylglutamate synthase compare
PS417_12690 -2.5 -4.3 xylulose kinase conserved
PS417_26995 -2.5 -8.9 phosphoserine phosphatase compare
PS417_27875 -2.5 -12.2 histidine kinase compare
PS417_01850 -2.5 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01570 -2.5 -1.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_22690 -2.5 -3.2 phosphogluconate dehydratase compare
PS417_27835 -2.5 -6.1 endoribonuclease compare
PS417_01855 -2.4 -2.5 phosphoribosyl-AMP cyclohydrolase compare
PS417_28220 -2.4 -2.5 LysR family transcriptional regulator compare
PS417_20985 -2.4 -2.3 porin compare
PS417_25715 -2.4 -5.2 anthranilate phosphoribosyltransferase compare
PS417_18105 -2.3 -2.1 iron-dicitrate transporter substrate-binding subunit compare
PS417_00185 -2.3 -3.6 tryptophan synthase subunit beta compare
PS417_12290 -2.2 -5.2 sulfite reductase compare
PS417_01915 -2.2 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_24155 -2.2 -2.1 ATP-binding protein compare
PS417_18690 -2.0 -4.5 aromatic amino acid aminotransferase compare
PS417_03925 -1.9 -6.3 nicotinate-nucleotide pyrophosphorylase compare
PS417_22385 -1.9 -8.3 quinolinate synthase A compare
PS417_07170 -1.8 -3.0 hypothetical protein compare
PS417_08365 -1.7 -1.4 hypothetical protein compare
PS417_18780 -1.7 -2.0 flavin reductase compare
PS417_04380 -1.7 -1.2 ABC transporter permease compare
PS417_06245 -1.6 -2.0 zinc metallopeptidase RseP compare
PS417_01095 -1.6 -1.4 amino acid ABC transporter ATP-binding protein compare
PS417_07115 -1.5 -8.5 L-aspartate oxidase compare
PS417_21360 -1.4 -1.4 termination factor Rho compare
PS417_08130 -1.4 -2.6 aspartate aminotransferase compare
PS417_03560 -1.4 -1.9 GTP-binding protein compare
PS417_24895 -1.4 -1.8 hypothetical protein compare
PS417_16490 -1.4 -1.3 cell division protein FtsK compare
PS417_06375 -1.3 -0.9 deoxycytidine triphosphate deaminase compare
PS417_20160 -1.3 -2.3 cysteine synthase compare
PS417_26985 -1.3 -5.3 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27605 -1.2 -4.4 hypothetical protein compare
PS417_18310 -1.2 -1.2 hypothetical protein compare
PS417_24585 -1.2 -6.5 AMP nucleosidase compare
PS417_04390 -1.2 -3.4 toluene tolerance protein compare
PS417_22175 -1.2 -1.3 amino acid transporter LysE compare
PS417_12310 -1.2 -5.0 methionine synthase compare
PS417_05840 -1.2 -2.6 LuxR family transcriptional regulator compare
PS417_21700 -1.2 -2.5 arginine N-succinyltransferase compare
PS417_24460 -1.1 -2.8 hypothetical protein compare
PS417_14260 -1.1 -3.3 phosphate ABC transporter permease compare
PS417_17780 -1.1 -1.3 Ais protein compare
PS417_10425 -1.1 -1.7 hypothetical protein compare
PS417_14805 -1.1 -1.6 AraC family transcriptional regulator compare
PS417_19125 -1.1 -2.3 LysR family transcriptional regulator compare
PS417_02980 -1.1 -1.4 chemotaxis protein compare
PS417_22795 -1.1 -1.9 exclusion suppressor FxsA compare
PS417_21705 -1.1 -3.0 arginine N-succinyltransferase compare
PS417_23770 -1.1 -1.3 exodeoxyribonuclease V subunit alpha compare
PS417_01560 -1.1 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_27435 -1.1 -4.8 polyphosphate kinase compare
PS417_14075 -1.1 -1.4 hypothetical protein compare
PS417_07575 -1.1 -2.9 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_09235 -1.1 -0.9 molecular chaperone compare
PS417_19335 -1.1 -1.8 isochorismatase compare
PS417_06145 -1.0 -1.0 hypothetical protein compare
PS417_13445 -1.0 -1.9 D-aminopeptidase compare
PS417_06600 -1.0 -0.9 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_00085 -1.0 -1.2 16S rRNA methyltransferase compare
PS417_07710 -1.0 -3.6 membrane protein compare
PS417_27300 -1.0 -0.8 cell division protein ZapA compare
PS417_26510 -1.0 -4.7 5,10-methylenetetrahydrofolate reductase compare
PS417_04860 -0.9 -4.7 ATPase compare
PS417_28070 -0.9 -4.5 phosphate ABC transporter ATP-binding protein compare
PS417_27135 -0.9 -0.7 glutamine synthetase compare
PS417_10675 -0.9 -0.9 TetR family transcriptional regulator compare
PS417_25295 -0.9 -2.7 hypothetical protein compare
PS417_04385 -0.9 -2.0 organic solvent ABC transporter substrate-binding protein compare
PS417_19065 -0.9 -0.8 monooxygenase compare
PS417_15100 -0.9 -1.8 BatB protein compare
PS417_18590 -0.9 -2.0 SAM-dependent methyltransferase compare
PS417_01645 -0.9 -2.2 cupin compare
PS417_20705 -0.9 -2.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_11055 -0.9 -1.2 AraC family transcriptional regulator compare
PS417_09695 -0.9 -1.6 hydrolase compare
PS417_08730 -0.9 -0.8 cytochrome C compare
PS417_14315 -0.9 -1.3 2,5-dioxovalerate dehydrogenase compare
PS417_18545 -0.8 -2.2 cell division protein compare
PS417_08540 -0.8 -1.7 RNA helicase compare
PS417_06165 -0.8 -2.6 thiamine biosynthesis protein ThiF compare
PS417_05100 -0.8 -1.6 RNA polymerase sigma factor compare
PS417_20520 -0.8 -1.2 3-phosphoglycerate kinase compare
PS417_23995 -0.8 -0.7 preprotein translocase subunit SecG compare
PS417_27010 -0.8 -4.6 threonine dehydratase compare
PS417_20025 -0.8 -1.2 alpha-ribazole phosphatase compare
PS417_15225 -0.8 -2.6 alpha/beta hydrolase compare
PS417_21750 -0.8 -6.4 acetyl-CoA synthetase compare
PS417_26850 -0.8 -0.6 twin-arginine translocation pathway signal protein compare
PS417_11175 -0.8 -1.9 AraC family transcriptional regulator compare
PS417_20170 -0.8 -2.1 hypothetical protein compare
PS417_18965 -0.8 -2.3 dienelactone hydrolase compare
PS417_07165 -0.8 -2.7 dihydrodipicolinate synthase compare
PS417_06200 -0.8 -2.9 protein-PII uridylyltransferase compare
PS417_13730 -0.8 -1.3 hypothetical protein compare
PS417_08585 -0.8 -2.6 ATPase AAA compare
PS417_07420 -0.8 -2.0 restriction endonuclease compare
PS417_23160 -0.8 -1.5 50S rRNA methyltransferase compare
PS417_11950 -0.8 -1.0 hypothetical protein compare
PS417_23775 -0.8 -1.3 exodeoxyribonuclease V subunit beta compare
PS417_11440 -0.8 -1.5 hypothetical protein compare
PS417_11090 -0.8 -2.8 LacI family transcriptional regulator compare
PS417_01710 -0.8 -2.4 histidine utilization repressor compare
PS417_13490 -0.8 -1.6 hypothetical protein compare
PS417_23025 -0.8 -2.8 murein transglycosylase compare
PS417_25975 -0.8 -3.5 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_15910 -0.8 -2.3 lysine transporter LysE compare
PS417_04220 -0.8 -0.9 4-carboxymuconolactone decarboxylase compare
PS417_13175 -0.8 -1.3 iron transporter compare
PS417_20140 -0.8 -1.6 nucleoprotein/polynucleotide-associated enzyme compare
PS417_13140 -0.8 -1.3 oxidoreductase compare
PS417_02740 -0.8 -1.4 LysR family transcriptional regulator compare
PS417_07620 -0.8 -1.4 beta-hexosaminidase compare
PS417_08665 -0.8 -3.5 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_25315 -0.8 -2.7 membrane protein compare
PS417_23900 -0.8 -4.5 poly(A) polymerase compare
PS417_09045 -0.8 -3.5 histidine kinase compare
PS417_19430 -0.7 -1.5 ureidoglycolate hydrolase compare
PS417_08685 -0.7 -1.4 flagellar hook-length control protein FliK compare
PS417_10720 -0.7 -2.3 chemotaxis protein CheY compare
PS417_06730 -0.7 -1.0 3-carboxy-cis,cis-muconate cycloisomerase compare
PS417_03515 -0.7 -1.3 type III secretion protein compare
PS417_05570 -0.7 -3.0 DeoR faimly transcriptional regulator compare
PS417_09930 -0.7 -1.3 hypothetical protein compare
PS417_27870 -0.7 -1.8 ATP-dependent DNA helicase RecG compare
PS417_06895 -0.7 -1.7 DNA-binding protein compare
PS417_04375 -0.7 -1.3 ABC transporter ATP-binding protein compare
PS417_21395 -0.7 -4.1 radical SAM protein compare
PS417_21285 -0.7 -1.7 hypothetical protein compare
PS417_14515 -0.7 -1.2 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_16535 -0.7 -1.8 NUDIX hydrolase compare
PS417_13855 -0.7 -0.9 acetyl-CoA acetyltransferase compare
PS417_08350 -0.7 -1.8 preprotein translocase subunit TatD compare
PS417_03100 -0.7 -0.8 pilus assembly protein compare
PS417_24810 -0.7 -4.7 aldehyde dehydrogenase compare
PS417_20785 -0.7 -2.6 transcriptional regulator compare
PS417_13455 -0.7 -1.3 alkaline proteinase inhibitor compare
PS417_15480 -0.7 -1.0 ABC transporter substrate-binding protein compare
PS417_07615 -0.7 -3.0 TetR family transcriptional regulator compare
PS417_03815 -0.7 -1.2 DNA transporter compare
PS417_26915 -0.7 -3.0 GTPase SAR1 compare
PS417_20280 -0.7 -3.4 mechanosensitive ion channel protein MscS compare
PS417_05990 -0.7 -2.4 diguanylate cyclase compare
PS417_02765 -0.7 -1.1 phosphate starvation-inducible protein PsiF compare
PS417_00480 -0.7 -2.4 hypothetical protein compare
PS417_02070 -0.7 -0.7 membrane protein compare
PS417_02225 -0.7 -1.5 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_27515 -0.7 -1.7 heme biosynthesis protein HemY compare
PS417_24775 -0.7 -1.7 dehydratase compare
PS417_08680 -0.7 -0.8 flagellar biosynthesis protein FlhB compare
PS417_09210 -0.7 -1.0 TetR family transcriptional regulator compare
PS417_02705 -0.7 -1.1 urease accessory protein UreF compare
PS417_24705 -0.7 -1.3 D-alanyl-D-alanine carboxypeptidase compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Mannitol in Pseudomonas simiae WCS417

For carbon source D-Mannitol across organisms