Experiment set17IT015 for Pseudomonas simiae WCS417

Compare to:

Carbon source D-Mannitol 10 mM

200 most detrimental genes:

  gene name fitness t score description  
PS417_03385 +1.6 2.6 flavin reductase compare
PS417_00755 +1.5 1.5 biofilm PGA synthesis protein PgaD compare
PS417_00370 +1.3 2.1 hypothetical protein compare
PS417_19825 +1.2 9.4 ATPase AAA compare
PS417_19745 +1.2 6.4 flagellar assembly protein FliO compare
PS417_24650 +1.2 1.9 membrane protein compare
PS417_26605 +1.2 1.6 malonate decarboxylase subunit beta compare
PS417_21585 +1.1 7.8 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_18070 +1.1 1.3 general secretion pathway protein GspH compare
PS417_24675 +1.1 3.1 lipoyl synthase compare
PS417_19880 +1.1 7.7 flagellar basal body L-ring protein compare
PS417_21570 +1.0 3.4 flagellar basal body rod protein FlgB compare
PS417_19600 +1.0 0.5 exonuclease compare
PS417_13735 +1.0 1.9 hypothetical protein compare
PS417_19755 +1.0 2.7 flagellar motor switch protein FliM compare
PS417_22875 +1.0 2.8 hypothetical protein compare
PS417_21565 +1.0 5.8 flagellar basal body rod protein FlgC compare
PS417_23105 +1.0 1.0 hypothetical protein compare
PS417_10265 +1.0 2.3 peptidase compare
PS417_16555 +1.0 1.4 cupin compare
PS417_19725 +1.0 5.3 flagellar biosynthesis protein FlhB compare
PS417_00175 +1.0 1.5 CigR compare
PS417_19795 +1.0 8.3 flagellar assembly protein FliH compare
PS417_16080 +1.0 2.2 AraC family transcriptional regulator compare
PS417_19785 +1.0 3.4 flagellar biogenesis protein compare
PS417_19645 +0.9 1.6 chemotaxis protein compare
PS417_19740 +0.9 7.4 flagellar biosynthesis protein flip compare
PS417_15410 +0.9 2.0 hypothetical protein compare
PS417_19730 +0.9 3.3 flagellar biosynthesis protein FliR compare
PS417_19710 +0.9 7.1 flagellar biosynthesis protein FlhA compare
PS417_09865 +0.8 1.8 hypothetical protein compare
PS417_06125 +0.8 2.3 hypothetical protein compare
PS417_24525 +0.8 1.7 nuclease compare
PS417_22260 +0.8 3.0 segregation and condensation protein B compare
PS417_21595 +0.8 3.1 flagellar biosynthesis protein FlgN compare
PS417_13055 +0.8 1.5 aminotransferase compare
PS417_21990 +0.8 1.8 LacI family transcriptional regulator compare
PS417_04080 +0.8 1.8 peptide ABC transporter substrate-binding protein compare
PS417_14540 +0.8 1.3 cytochrome C oxidase subunit III compare
PS417_19765 +0.8 4.5 flagellar hook-length control protein compare
PS417_00195 +0.8 1.5 hypothetical protein compare
PS417_13255 +0.8 1.4 ABC transporter compare
PS417_00705 +0.8 1.4 MarR family transcriptional regulator compare
PS417_06500 +0.8 1.2 hypothetical protein compare
PS417_15820 +0.8 1.9 universal stress protein UspA compare
PS417_27940 +0.8 1.7 type VI secretion protein compare
PS417_28325 +0.8 1.1 phosphoribosyl-AMP cyclohydrolase compare
PS417_13195 +0.8 1.7 RND transporter MFP subunit compare
PS417_27460 +0.8 2.1 hypothetical protein compare
PS417_21015 +0.8 1.5 EstX protein compare
PS417_03895 +0.8 2.1 methyltransferase compare
PS417_15005 +0.8 2.3 hypothetical protein compare
PS417_26470 +0.8 1.2 cytochrome C compare
PS417_20610 +0.8 1.1 hypothetical protein compare
PS417_21555 +0.7 4.6 flagellar hook protein FlgE compare
PS417_18570 +0.7 3.1 peptidoglycan-binding protein compare
PS417_03475 +0.7 2.8 type III secretion protein compare
PS417_09545 +0.7 2.3 aldehyde-activating protein compare
PS417_00065 +0.7 1.1 3-methyladenine DNA glycosylase compare
PS417_19735 +0.7 1.8 flagellar biosynthesis protein FliQ compare
PS417_10220 +0.7 3.0 hypothetical protein compare
PS417_23755 +0.7 1.6 membrane protein compare
PS417_26900 +0.7 1.4 L-cystine transporter tcyP compare
PS417_19870 +0.7 2.0 flagellar rod assembly protein FlgJ compare
PS417_19695 +0.7 3.5 flagellar biosynthesis sigma factor compare
PS417_19830 +0.7 4.4 flagellar assembly protein FliT compare
PS417_10540 +0.7 1.7 NAD-dependent deacetylase compare
PS417_10985 +0.7 0.9 NADH:flavin oxidoreductase compare
PS417_21560 +0.7 3.5 flagellar basal body rod modification protein FlgD compare
PS417_08320 +0.7 1.4 metal-chelation protein CHAD compare
PS417_27180 +0.7 1.9 peroxidase compare
PS417_19625 +0.7 2.1 histidine kinase compare
PS417_11585 +0.7 1.5 LuxR family transcriptional regulator compare
PS417_11570 +0.7 1.4 ABC transporter permease compare
PS417_23380 +0.7 1.9 cytochrome o ubiquinol oxidase subunit III compare
PS417_19805 +0.7 2.3 flagellar M-ring protein FliF compare
PS417_21625 +0.7 0.9 DNA-binding protein compare
PS417_19800 +0.7 1.6 flagellar motor switch protein FliG compare
PS417_08150 +0.7 1.4 hypothetical protein compare
PS417_05555 +0.7 1.8 amino acid ABC transporter permease compare
PS417_07940 +0.7 1.4 hypothetical protein compare
PS417_11785 +0.7 2.5 glutamine synthetase compare
PS417_04760 +0.7 2.1 hypothetical protein compare
PS417_10405 +0.7 0.8 filamentous hemagglutinin compare
PS417_15400 +0.7 1.0 hypothetical protein compare
PS417_14840 +0.6 2.3 abortive phage infection protein compare
PS417_00660 +0.6 1.5 DSBA oxidoreductase compare
PS417_10855 +0.6 2.3 chemotaxis protein CheY compare
PS417_19885 +0.6 1.5 flagellar basal body rod protein FlgG compare
PS417_07700 +0.6 1.6 chromosome partitioning protein ParA compare
PS417_25645 +0.6 2.3 peptidase M23 compare
PS417_02455 +0.6 2.3 putative transporter, required for glycine utilization (from data) compare
PS417_12730 +0.6 1.6 glycosyltransferase compare
PS417_01130 +0.6 2.2 L-glyceraldehyde 3-phosphate reductase compare
PS417_09085 +0.6 0.9 hypothetical protein compare
PS417_07845 +0.6 1.8 transcriptional regulator compare
PS417_06095 +0.6 1.2 energy transducer TonB compare
PS417_04185 +0.6 0.9 hypothetical protein compare
PS417_01430 +0.6 1.7 chromosome segregation protein SMC compare
PS417_19865 +0.6 4.8 flagellar hook protein FlgK compare
PS417_05560 +0.6 1.8 ABC transporter compare
PS417_10480 +0.6 0.9 glutathione S-transferase compare
PS417_13050 +0.6 1.4 N-acetylglucosamine-6-sulfatase compare
PS417_07305 +0.6 1.7 3-beta hydroxysteroid dehydrogenase compare
PS417_24455 +0.6 2.2 membrane protein compare
PS417_04835 +0.6 1.1 hemolysin D compare
PS417_10275 +0.6 0.8 histidine kinase compare
PS417_19590 +0.6 1.8 enoyl-CoA hydratase compare
PS417_05160 +0.6 0.5 DNA polymerase III subunit chi compare
PS417_21220 +0.6 3.0 acetyl-CoA acetyltransferase compare
PS417_14175 +0.6 1.7 ArsC family transcriptional regulator compare
PS417_24840 +0.6 1.3 hypothetical protein compare
PS417_15065 +0.6 1.9 GntR family transcriptional regulator compare
PS417_07870 +0.6 1.8 hypothetical protein compare
PS417_14065 +0.6 2.0 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_20115 +0.6 1.2 hypothetical protein compare
PS417_17945 +0.6 0.6 hypothetical protein compare
PS417_08220 +0.6 0.5 epimerase compare
PS417_12660 +0.6 0.9 hypothetical protein compare
PS417_01435 +0.5 0.9 hypothetical protein compare
PS417_16775 +0.5 1.9 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_28265 +0.5 1.1 pyridoxamine kinase compare
PS417_10285 +0.5 2.2 sodium:proton antiporter compare
PS417_16720 +0.5 0.7 membrane protein compare
PS417_08205 +0.5 1.5 acetyltransferase compare
PS417_12925 +0.5 3.1 serine dehydratase compare
PS417_02320 +0.5 2.2 metal ABC transporter ATPase compare
PS417_10245 +0.5 0.6 hypothetical protein compare
PS417_26400 +0.5 1.2 metal-dependent hydrolase compare
PS417_01200 +0.5 2.4 phosphoesterase compare
PS417_17665 +0.5 1.8 ABC transporter permease compare
PS417_09910 +0.5 1.9 gifsy-1 prophage protein compare
PS417_03380 +0.5 0.9 hypothetical protein compare
PS417_10995 +0.5 0.9 GntR family transcriptional regulator compare
PS417_01145 +0.5 0.7 taurine transporter ATP-binding subunit compare
PS417_26175 +0.5 0.5 sarcosine oxidase subunit gamma compare
PS417_00455 +0.5 1.2 hypothetical protein compare
PS417_08575 +0.5 1.8 MarR family transcriptional regulator compare
PS417_27405 +0.5 2.3 hypothetical protein compare
PS417_07900 +0.5 3.2 hypothetical protein compare
PS417_08335 +0.5 1.2 hypothetical protein compare
PS417_02880 +0.5 0.9 copper chaperone compare
PS417_12025 +0.5 1.9 DSBA oxidoreductase compare
PS417_19790 +0.5 1.7 ATP synthase compare
PS417_27975 +0.5 2.6 type VI secretion protein compare
PS417_26220 +0.5 1.2 Rieske (2Fe-2S) protein compare
PS417_19760 +0.5 2.7 flagellar basal body protein FliL compare
PS417_05635 +0.5 2.7 membrane protein compare
PS417_07015 +0.5 1.1 helicase compare
PS417_18265 +0.5 1.2 AsnC family transcriptional regulator compare
PS417_05255 +0.5 1.8 hypothetical protein compare
PS417_12075 +0.5 2.4 DNA-binding protein compare
PS417_00325 +0.5 2.3 hypothetical protein compare
PS417_19505 +0.5 1.2 2,4-diaminobutyrate 4-aminotransferase compare
PS417_18760 +0.5 1.2 hypothetical protein compare
PS417_09465 +0.5 2.0 FMN reductase compare
PS417_00035 +0.5 2.4 hypothetical protein compare
PS417_06970 +0.5 1.2 LysR family transcriptional regulator compare
PS417_25290 +0.5 1.7 hypothetical protein compare
PS417_13205 +0.5 1.1 isochorismate-pyruvate lyase compare
PS417_20205 +0.5 1.8 LysR family transcriptional regulator compare
PS417_16100 +0.5 1.1 antibiotic biosynthesis monooxygenase compare
PS417_02340 +0.5 1.8 LysR family transcriptional regulator compare
PS417_12735 +0.5 1.1 peroxidase compare
PS417_25155 +0.5 1.0 hypothetical protein compare
PS417_00940 +0.5 1.6 sulfate ABC transporter permease compare
PS417_05650 +0.5 1.2 leucyl-tRNA synthetase compare
PS417_25950 +0.5 2.1 acetylornithine aminotransferase compare
PS417_11800 +0.5 2.1 LysR family transcriptional regulator compare
PS417_27340 +0.5 1.5 NADPH:quinone oxidoreductase compare
PS417_08200 +0.5 1.3 hypothetical protein compare
PS417_14995 +0.5 1.5 serine/threonine protein kinase compare
PS417_11185 +0.5 1.5 dimethylallyltransferase compare
PS417_06700 +0.5 1.3 3-oxoadipate CoA-transferase subunit A (EC 2.8.3.6) (from data) compare
PS417_17680 +0.5 1.0 ABC transporter compare
PS417_10390 +0.5 1.0 RNA polymerase subunit sigma24 compare
PS417_04800 +0.5 1.3 alginate O-acetyltransferase compare
PS417_12045 +0.5 1.7 iditol 2-dehydrogenase compare
PS417_16105 +0.5 1.0 LysR family transcriptional regulator compare
PS417_24225 +0.5 1.4 hypothetical protein compare
PS417_18130 +0.5 1.3 ABC transporter substrate-binding protein compare
PS417_12255 +0.5 2.3 hypothetical protein compare
PS417_16320 +0.5 1.1 protein tyrosine phosphatase compare
PS417_25775 +0.5 2.2 lipoprotein compare
PS417_16680 +0.5 1.2 MFS transporter compare
PS417_27555 +0.5 1.2 DNA-binding protein compare
PS417_07280 +0.5 1.9 LysR family transcriptional regulator compare
PS417_02955 +0.5 2.2 hypothetical protein compare
PS417_01945 +0.5 1.7 nuclease compare
PS417_26365 +0.5 1.4 EmrB/QacA subfamily drug resistance transporter compare
PS417_15495 +0.5 0.8 FAD-dependent oxidoreductase compare
PS417_11455 +0.5 1.2 hypothetical protein compare
PS417_14235 +0.5 1.6 hypothetical protein compare
PS417_16395 +0.5 1.2 arsenate reductase compare
PS417_13090 +0.5 1.3 dienelactone hydrolase compare
PS417_06370 +0.5 0.9 cold-shock protein compare
PS417_19840 +0.5 3.2 flagellar cap protein FliD compare
PS417_15585 +0.5 1.9 DNA repair nucleotidyltransferase compare
PS417_25030 +0.5 1.5 hypothetical protein compare
PS417_21730 +0.5 1.3 peptidase M14 compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Mannitol in Pseudomonas simiae WCS417

For carbon source D-Mannitol across organisms